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ARS Home » Plains Area » Fargo, North Dakota » Edward T. Schafer Agricultural Research Center » Cereal Crops Research » People & Locations » Justin Faris
Justin D Faris
Cereal Crops Research
Research Geneticist (Plants)

Phone: (701) 239-1339
Fax: (701) 239-1369

USDA,ARS,NCSL
1307 18TH ST N
FARGO , ND 581022765
Projects
Improvement of Biotic Stress Resistance in Durum and Hard Red Spring Wheat Using Genetics and Genomics
In-House Appropriated (D)
  Accession Number: 434261
Characterization of Genes Governing Sensitivity to Host-Selective Toxins Produced by Necrotrophic Pathogens in Wheat
Interagency Reimbursable Agreement (I)
  Accession Number: 428201
Coordinated Agricultural Project (WheatCAP): Validation, Characterization and Deployment of QTL for Grain Yield Components in Wheat
Reimbursable Cooperative Agreement (R)
  Accession Number: 432394
Genomic Analysis of Tan Spot Resistance in Wheat
Non-Assistance Cooperative Agreement (S)
  Accession Number: 431353

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
A tale of three wheat genes reveals the ability of a necrotrophic pathogen to bamboozle diverse host targets -
Identification of QTL for Yield Components and Seed Morphology in three Durum × Cultivated Emmer Populations -
High-resolution mapping of the septoria nodorum blotch susceptibility gene Snn2 in wheat -
Toward the molecular cloning of a septoria nodorum blotch susceptibility gene in durum wheat -
Genetic analysis of threshability and other spike traits in the evolution of cultivated emmer to fully domesticated durum wheat -
Genetics of variable disease expression conferred by inverse gene-for-gene interactions in the wheat-Parastagonospora nodorum pathosystem -
Peters Haugrud, A.R., Zhang, Z., Richards, J.K., Friesen, T.L., Faris, J.D. 2019. Genetics of variable disease expression conferred by inverse gene-for-gene interactions in the wheat-Parastagonospora nodorum pathosystem. Plant Physiology. 180(1):420-434. https://doi.org/10.1104/pp.19.00149.
Durum wheat genome highlights past domestication signatures and future improvement targets -
Maccaferri, M., Harris, N.S., Twardziok, S.O., Gundlach, H., Spannagl, M., Ormanbekova, D., Lux, T., Prade, V., Milner, S., Himmelbach, A., Chao, S., Faris, J.D., Xu, S.S. 2019. Durum wheat genome highlights past domestication signatures and future improvement targets. Nature Genetics. 51(5):885-895. https://doi.org/10.1038/s41588-019-0381-3.
Genetic diversity and resistance to Fusarium head blight in synthetic hexaploid wheat derived from Aegilops tauschii and diverse Triticum turgidum subspecies -
Szabo-Hever, A., Zhang, Q., Friesen, T.L., Shaobin, Z., Elias, E.M., Cai, X., Jin, Y., Faris, J.D., Chao, S., Xu, S.S. 2018. Genetic diversity and resistance to Fusarium head blight in synthetic hexaploid wheat derived from Aegilops tauschii and diverse Triticum turgidum subspecies. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2018.01829.
Fusarium graminearum KP4-like proteins possess root growth-inhibiting activity against wheat and potentially contribute to fungal virulence in seedling rot -
Lu, S., Faris, J.D. 2019. Fusarium graminearum KP4-like proteins possess root growth-inhibiting activity against wheat and potentially contribute to fungal virulence in seedling rot. Fungal Genetics and Biology. 123:1-13. https://doi.org/10.1016/j.fgb.2018.11.002.
Molecular cloning and comparative analysis of a PR-1-RK hybrid gene from Triticum urartu, the A-genome progenitor of hexaploid wheat -
Lu, S., Faris, J.D., Edwards, M.C. 2018. Molecular cloning and comparative analysis of a PR-1-RK hybrid gene from Triticum urartu, the A-genome progenitor of hexaploid wheat. Plant Molecular Biology. https://doi.org/10.1007/s11105-018-1098-7.
ToxA is present in the United States Bipolaris sorokiniana population and is a significant virulence factor on wheat harboring Tsn1 -
Identification, mapping, and marker development of stem rust resistance genes in durum wheat 'Lebsock' -
Saini, J., Faris, J.D., Zhang, Q., Rouse, M.N., Jin, Y., Long, Y., Klindworth, D.L., Elias, E.M., McClean, P.E., Edwards, M.C., Xu, S.S. 2018. Identification, mapping, and marker development of stem rust resistance genes in durum wheat 'Lebsock'. Molecular Breeding. 38:77. https://doi.org/10.1007/s11032-018-0833-y.
Identification and validation of a new source of low grain cadmium accumulation in durum wheat -
Abbasabadi, A.O., Kumar, A., Pirseyedi, S., Salsman, E., Dobrydina, M., Poudel, R.S., Abuhammad, W.A., Chao, S., Faris, J.D., Elias, E.M. 2018. Identification and validation of a new source of low grain cadmium accumulation in durum wheat. G3, Genes/Genomes/Genetics. 8:923-932.
Reference quality genome assemblies of three Parastagonospora nodorum isolates differing in virulence on wheat -
Richards, J.K., Wyatt, N.A., Liu, Z., Faris, J.D., Friesen, T.L. 2018. Reference quality genome assemblies of three Parastagonospora nodorum isolates differing in virulence on wheat. G3, Genes/Genomes/Genetics. 8:393-399. https://doi.org/10.1534/g3.117.300462.
STARP: A user-friendly and broadly applicable technique for SNP genotyping in wheat and other crops -
Long, Y., Qi, L., Cai, X., Faris, J.D., Xu, S.S. 2018. STARP: A user-friendly and broadly applicable technique for SNP genotyping in wheat and other crops. Plant and Animal Genome Conference. Available: https://plan.core-apps.com/pag_2018/abstract/fff6e3855de940b33de03bc4efb58e64
Identification and molecular mapping of quantitative trait loci for resistance to Fusarium head blight in cultivated emmer PI 272527 -
Zhang, Q., Faris, J.D., Chao, S., Friesen, T.L., Zhong, S., Cai, X., Elias, E.M., Xu, S.S. 2017. Identification and molecular mapping of quantitative trait loci for resistance to Fusarium head blight in cultivated emmer PI 272527 [abstract]. In: Proceedings of the 2017 National Fusarium Head Blight Forum. December 3-5, 2017, Milwaukee, Wisconsin. p. 97.
A major tan spot race-nonspecific resistance gene in tetraploid and hexaploid wheat -
Faris, J.D., Overlander, M., Kariyawasam, G.K., Carter, A.H., Liu, Z. 2018. A major tan spot race-nonspecific resistance gene in tetraploid and hexaploid wheat [abstract]. Plant and Animal Genome Conference XXVI. January 13-17, 2018, San Diego, CA. P1080.
Differential expression of the necrotrophic effector gene SnTox1 in the pathogen Parastagonospora nodorum -
Peters, A.R., Friesen, T.L., Faris, J.D. 2018. Differential expression of the necrotrophic effector gene SnTox1 in the pathogen Parastagonospora nodorum. Plant and Animal Genome Conference XXVI. January 13-17, 2018, San Diego, CA. P1081.
Molecular manipulation of the mating-type system and development of a new approach for characterizing pathogen virulence in Pyrenophora tritici-repentis -
Ameen, G., Kariyawasam, G., Shi, G., Friesen, T.L., Faris, J.D., Ali, S., Rasmussen, J.B., Liu, Z. 2017. Molecular manipulation of the mating-type system and development of a new approach for characterizing pathogen virulence in Pyrenophora tritici-repentis. Fungal Genetics and Biology. 109:16-25. https://doi.org/10.1016/j.fgb.2017.10.004.
Discovery of a novel stem rust resistance allele in durum wheat that exhibits differential reactions to Ug99 isolates -
Nirmala, J., Saini, J., Newcomb, M., Olivera, P., Gale, S.W., Klindworth, D.L., Elias, E., Talbert, L., Chao, S., Faris, J.D., Xu, S.S., Jin, Y., Rouse, M.N. 2017. Discovery of a novel stem rust resistance allele in durum wheat that exhibits differential reactions to Ug99 isolates. G3, Genes/Genomes/Genetics. 7:3481-3490.
Discovery of a novel stem rust resistance allele in durum wheat that exhibits differential reactions to Ug99 isolates -
Nirmala, J., Saini, J., Newcomb, M., Olivera, P., Gale, S.W., Klindworth, D.L., Elias, E., Talbert, L., Chao, S., Faris, J.D., Xu, S.S., Jin, Y., Rouse, M.N. 2017. Discovery of a novel stem rust resistance allele in durum wheat that exhibits differential reactions to Ug99 isolates. G3, Genes/Genomes/Genetics. https://doi.org/10.1534/g3.117.300209.
Genetic analysis of virulence in the Pyrenophora teres f. teres population BB25 x FGOH04Ptt021 -
Koladia, V.M., Richards, J.K., Wyatt, N.A., Faris, J.D., Brueggeman, R.S., Friesen, T.L. 2017. Genetic analysis of virulence in the Pyrenophora teres f. teres population BB25 x FGOH04Ptt021. Fungal Genetics and Biology. 107:12-19. https://doi.org/10.1016/j.fgb.2017.07.003.
Wild emmer genome architecture and diversity elucidate wheat evolution and domestication Reprint Icon -
Avni, R., Nave, M., Barad, O., Baruch, K., Twardziok, S.O., Gundlach, H., Hale, I., Mascher, M., Spannagl, M., Wiebe, K., Jordan, K.W., Golan, G., Deek, J., Ben-Zvi, B., Ben-Zvi, G., Himmelbach, A., MacLachlan, R.P., Sharpe, A.G., Fritz, A., Ben-David, R., Budak, H., Fahima, T., Korol, A., Faris, J.D., Hernandez, A., Mikel, M.A., Levy, A.A., Steffenson, B., Maccaferri, M., Tuberosa, R., Cattivelli, L., Faccioli, P., Ceriotti, A., Kashkush, K., Pourkheirandish, M., Komatsuda, T., Eilam, T., Sela, H., Sharon, A., Ohad, N., Chamovitz, D.A., Mayer, K.F.X., Stein, N., Ronen, G., Peleg, Z., Pozniak, C.J., Akhunov, E.D., Distelfeld, A. 2017. Wild emmer genome architecture and diversity elucidate wheat evolution and domestication. Science. 357:93-97.
Characterizing the Pyrenophora teres f. maculata – barley interaction using pathogen genetics -
Carlsen, S.A., Neupane, A., Wyatt, N.A., Richards, J.K., Faris, J.D., Xu, S.S., Brueggeman, R.S., Friesen, T.L. 2017. Characterizing the Pyrenophora teres f. maculata – barley interaction using pathogen genetics. G3: Genes, Genomes, Genetics. 7(8):2615-2626. 10.1534/g3.117.043265.
MicroRNA172 plays a critical role in wheat spike morphogenesis and grain threshability Reprint Icon -
Debernardi, J.M., Lin, H., Chuck, G., Faris, J.D., Dubcovsky, J. 2017. MicroRNA172 plays a critical role in wheat spike morphogenesis and grain threshability. Development. 144:1966-1975.
Inverse gene-for-gene interactions contribute additively to tan spot susceptibility in wheat Reprint Icon -
Liu, Z., Zurn, J.D., Kariyawasam, G., Faris, J.D., Shi, G., Hansen, J., Rasmussen, J.B., Acevedo, M. 2017. Inverse gene-for-gene interactions contribute additively to tan spot susceptibility in wheat. Theoretical and Applied Genetics. 130:1267-1276. doi: 10.1007/s00122-017-2886-4.
Physical mapping of DNA markers linked to stem rust resistance gene Sr47 in durum wheat Reprint Icon -
Klindworth, D.L., Saini, J., Long, Y., Rouse, M.N., Faris, J.D., Jin, Y., Xu, S.S. 2017. Physical mapping of DNA markers linked to stem rust resistance gene Sr47 in durum wheat. Theoretical and Applied Genetics. 130:1135-1154. doi: 10.1007/s00122-017-2875-7.
Molecular cloning and characterization of two novel genes from hexaploid wheat that encode double PR-1 domains coupled with a receptor-like protein kinase -
Lu, S., Faris, J.D., Edwards, M.C. 2017. Molecular cloning and characterization of two novel genes from hexaploid wheat that encode double PR-1 domains coupled with a receptor-like protein kinase. Molecular Genetics and Genomics. 292:435-452. doi:10.1007/s00438-017-1287-3.
Toward the molecular cloning of the Septoria nodorum blotch susceptibility gene Snn2 in wheat -
Seneviratne, S., Friesen, T.L., Faris, J.D. 2017. Toward the molecular cloning of the Septoria nodorum blotch susceptibility gene Snn2 in wheat [abstract]. Plant & Animal Genome Conference, January 14-18, 2017, San Diego, CA.
Quantification of disease expression conferred by three host gene-necrotrophic effector interactions in the wheat-Parastagonospora nodorum pathosystem -
Peters, A.R., Friesen, T.L., Faris, J.D. 2017. Quantification of disease expression conferred by three host gene-necrotrophic effector interactions in the wheat-Parastagonospora nodorum pathosystem [abstract]. Plant and Animal Genome Conference, January 14-18, 2017, San Diego, CA.
Fine mapping of the chromosome 5B region carrying closely linked rust resistance genes Yr47 and Lr52 in wheat -
Qureshi, N., Bariana, H., Forrest, K., Hayden, M., Keller, B., Wicker, T., Faris, J.D., Salina, E., Bansal, U. 2017. Fine mapping of the chromosome 5B region carrying closely linked rust resistance genes Yr47 and Lr52 in wheat. Theoretical and Applied Genetics. 130:495-504.
New insights into the roles of host gene-necrotrophic effector interactions in governing susceptibility of durum wheat to tan spot and Septoria nodorum blotch -
Virdi, S.K., Liu, Z., Overlander, M., Zhang, Z., Xu, S.S., Friesen, T.L., Faris, J.D. 2016. New insights into the roles of host gene-necrotrophic effector interactions in governing susceptibility of durum wheat to tan spot and Septoria nodorum blotch. Genes, Genomes, Genetics. 6:4139-4150. doi: 10.1534/g3.116.036525.
The hijacking of a receptor kinase-driven pathway by a wheat fungal pathogen leads to disease Reprint Icon -
Shi, G., Zhang, Z., Friesen, T.L., Raats, D., Fahima, T., Brueggeman, R.S., Lu, S., Trick, H.N., Liu, Z., Chao, W., Frenkel, Z., Xu, S.S., Rasmussen, J.B., Faris, J.D. 2016. The hijacking of a receptor kinase-driven pathway by a wheat fungal pathogen leads to disease. Science Advances. 2:e1600822.
Genetic analysis of net form net blotch resistance in barley lines CIho 5791 and Tifang against a global collection of P.teres f. teres isolates Reprint Icon -
Koladia, V.M., Faris, J.D., Richards, J.K., Brueggeman, R.S., Chao, S., Friesen, T.L. 2016. Genetic analysis of net form net blotch resistance in barley lines CIho 5791 and Tifang against a global collection of P.teres f. teres isolates. Theoretical and Applied Genetics. 130:163-173. doi: 10.1007/s00122-016-2801-4.
Unraveling the genetics of wheat-necrotrophic pathogen interactions reveals a conundrum -
Faris, J.D., Friesen, T.L., Liu, Z., Xu, S.S. 2016. Unraveling the genetics of wheat-necrotrophic pathogen interactions reveals a conundrum [abstract]. Durable Wheat Resistance Meeting, November 2-3, 2016, Minneapolis, MN.
Quantification of disease expression conferred by three host gene-necrotrophic effector interactions in the wheat-Parastagonospora nodorum pathosystem -
Peters, A.R., Friesen, T.L., Faris, J.D. 2016. Quantification of disease expression conferred by three host gene-necrotrophic effector interactions in the wheat-Parastagonospora nodorum pathosystem [abstract]. Durable Wheat Resistance Meeting, November 2-3, 2016, Minneapolis, MN.
Genomic analysis and tools for the Septoria nodorum blotch susceptibility gene Snn2 in wheat -
Seneviratne, S., Friesen, T.L., Faris, J.D. 2016. Genomic analysis and tools for the Septoria nodorum blotch susceptibility gene Snn2 in wheat [abstract]. Durable Wheat Resistance Meeting, November 2-3, 2016, Minneapolis, MN.
Genomic analysis of a novel gene conferring resistance to Ug99 stem rust in Triticum turgidum ssp. dicoccum -
Saini, J., Xu, S.S., Rouse, M.N., Chao, S., Long, Y., Mcclean, P., Faris, J.D. 2016. Genomic analysis of a novel gene conferring resistance to Ug99 stem rust in Triticum turgidum ssp. dicoccum [abstract]. Durable Wheat Resistance Meeting, November 2-3, 2016, Minneapolis, MN.
Validation of genome-wide association studies as a tool to identify virulence factors in Parastagonospora nodorum Reprint Icon -
Gao, Y., Liu, Z., Faris, J.D., Richards, J., Brueggeman, R.S., Li, X., Oliver, R.P., McDonald, B.A., Friesen, T.L. 2016. Validation of genome-wide association studies as a tool to identify virulence factors in Parastagonospora nodorum. Phytopathology. 106(10):1177-1185.
SnTox1, a Parastagonospora nodorum necrotrophic effector, is a dual function protein that facilitates infection while protecting from wheat-produced chitinases Reprint Icon -
Liu, Z., Gao, Y., Kim, Y.M., Faris, J.D., Shelver, W.L., de Wit, P.J.G.M., Xu, S.S., Friesen, T.L. 2016. SnTox1, a Parastagonospora nodorum necrotrophic effector, is a dual-function protein that facilitates infection while protecting from wheat-produced chitinases. New Phytologist. 211:1052-1064. doi: 10.1111/nph.13959.
Genetic relationships between race-nonspecific and race-specific interactions in the wheat-Pyrenophora tritici-repentis pathosystem Reprint Icon -
Kariyawasam, G.K., Carter, A.H., Rasmussen, J.B., Faris, J., Xu, S.S., Mergoum, M., Liu, Z. 2016. Genetic relationships between race-nonspecific and race-specific interactions in the wheat-Pyrenophora tritici-repentis pathosystem. Theoretical and Applied Genetics. 129:897-908. doi: 10.1007/s00122-016-2670-x.
Genome mapping -
Tiwari, V.K., Faris, J.D., Friebe, B., Gill, B.S. 2016. Genome mapping. In: Wrigley, C., Walker, C.E., Corke, H., editors. Encyclopedia of Grain Science. Waltham, MA: Academic Press. pp. 365-375.
Genetic mapping of major-effect seed dormancy quantitative trait loci on chromosome 2B using recombinant substitution lines in tetraploid wheat Reprint Icon -
Chao, S., Elias, E., Benscher, D., Ishikawa, G., Huang, Y.-F., Saito, M., Nakamura, T., Xu, S., Faris, J., Sorrells, M. 2016. Genetic mapping of major-effect seed dormancy quantitative trait loci on chromosome 2B using recombinant substitution lines in tetraploid wheat. Crop Science. 56:59-72.
Development of a diagnostic co-dominant marker for stem rust resistance gene Sr47 introgressed from Aegilops speltoides into durum wheat Reprint Icon -
Yu, G., Klindworth, D.L., Friesen, T.L., Faris, J.D., Zhong, S., Rasmussen, J.B., Xu, S.S. 2015. Development of a diagnostic co-dominant marker for stem rust resistance gene Sr47 introgressed from Aegilops speltoides into durum wheat. Theoretical and Applied Genetics. 128:2367-2374.
Marker development, saturation mapping, and high-resolution mapping of the Septoria nodorum blotch susceptibility gene Snn3-B1 in wheat Reprint Icon -
Shi, G., Zhang, Z., Friesen, T.L., Bansal, U., Cloutier, S., Wicker, T., Rasmussen, J.B., Faris, J.D. 2016. Marker development, saturation mapping, and high-resolution mapping of the Septoria nodorum blotch susceptibility gene Snn3-B1 in wheat. Molecular Genetics and Genomics. 291:107-119.
The wheat Snn7 gene confers susceptibility upon recognition of the Parastagonospora nodorum necrotrophic effector SnTox7 Reprint Icon -
Shi, G., Friesen, T.L., Jyoti Saini, Xu, S.S., Rasmussen, J.B., Faris, J.D. 2015. The wheat Snn7 gene confers susceptibility on recognition of the Parastagonospora nodorum necrotrophic effector SnTox7. The Plant Genome. 8. doi: 10.3835/plantgenome2015.02.0007.
Development of genetic and genomic resources for target breeding in durum wheat -
Xu, S.S., Chao, S., Faris, J.D., Friesen, T.L., Liu, Z., Jin, Y., Rouse, M.N., Elias, E.M. 2015. Development of genetic and genomic resources for target breeding in durum wheat [abstract]. From Seed to Pasta & Beyond: A Sustainable Durum Wheat Chain for Food Security and Healthy Lives, May 31-June 3, 2015, Bologna Italy.
Identification and characterization of the SnTox6-Snn6 interaction in the Parastagonospora nodorum-wheat pathosystem Reprint Icon -
Gao, Y., Faris, J.D., Liu, Z., Kim, Y.M., Syme, R.A., Oliver, R.P., Xu, S.S., Friesen, T.L. 2015. Identification and characterization of the SnTox6-Snn6 interaction in the Parastagonospora nodorum-wheat pathosystem. Molecular Plant-Microbe Interactions. 28(5):615-625.
Identification and mapping of quantitative trait loci for Fusarium head blight resistance in emmer and durum wheat -
Zhang, Q., Axtman, J.E., Faris, J.D., Chao, S., Zhang, Z., Friesen, T.L., Zhong, S., Cai, X., Elias, E.M., Xu, S.S. 2014. Identification and mapping of quantitative trait loci for Fusarium head blight resistance in emmer and durum wheat [abstract]. In: Canty, S., Clark, A., Turcott, N., Van Sanford, D., editors. Proceedings of the National Fusarium Head Blight Forum, East Lansing, MI/Lexington, KY: U.S. Wheat & Barley Scab Initiative, December 7-9, 2014, St. Louis, MO. p. 102.
Genome-wide association mapping of susceptibility to Stagonospora nodorum blotch in emmer wheat -
Sun, Q., Chao, S., Friesen, T.L., Faris, J.D., Xu, S.S. 2015. Genome-wide association mapping of susceptibility to Stagonospora nodorum blotch in emmer wheat. Plant & Animal Genome XXIII, January 10-14, 2015, San Diego, CA. Available: https://pag.confex.com/pag/xxiii/webprogram/Paper16321.html.
Targeted introgression of stem rust Ug99 resistance from wheatgrasses into pasta and bread wheat -
Xu, S.S., Friesen, T.L., Chao, S., Jin, Y., Rouse, M.N., Faris, J.D., Cai, X. 2015. Targeted introgression of stem rust Ug99 resistance from wheatgrasses into pasta and bread wheat [abstract]. Plant & Animal Genome XXIII, January 10-14, 2015, San Diego, CA. Available: https://pag.confex.com/pag/xxiii/webprogram/Paper14596.html.
Identification and molecular mapping of quantitative trait loci for Fusarium head blight resistance in emmer and durum wheat using a single nucleotide polymorphism-based linkage map Reprint Icon -
Zhang, Q., Axtman, J.E., Faris, J.D., Chao, S., Zhang, Z., Friesen, T.L., Zhong, S., Cai, X., Elias, E.M., Xu, S.S. 2014. Identification and molecular mapping of quantitative trait loci for Fusarium head blight resistance in emmer and durum wheat using a single nucleotide polymorphism-based linkage map. Molecular Breeding. 34:1677-1687.
A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding Reprint Icon -
Maccaferri, M., Ricci, A., Salvi, S., Milner, S.G., Noli, E., Martelli, P.L., Casadio, R., Akhunov, E., Scalabrin, S., Vendramin, V., Ammar, K., Blanco, A., Desiderio, F., Distelfeld, A., Dubcovsky, J., Fahima, T., Faris, J.D., Korol, A., Massi, A., Mastrangelo, A.M., Morgante, M., Pozniak, C., N'Diaye, A., Xu, S., Tuberosa, R. 2015. A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding. Plant Biotechnology Journal. 13:648-663.
Analysis of agronomic and domestication traits in a durum x cultivated emmer wheat population using a high-density single nucleotide polymorphism-based linkage map Reprint Icon -
Faris, J.D., Zhang, Q., Chao, S., Zhang, Z., Xu, S.S. 2014. Analysis of agronomic and domestication traits in a durum x cultivated emmer wheat population using a high-density single nucleotide polymorphism-based linkage map. Theoretical and Applied Genetics. 127:2333-2348.
Evaluation of a Pyrenophora teres f. teres mapping population reveals multiple independent interactions with a region of barley chromosome 6H Reprint Icon -
Shjerve, R.A., Faris, J.D., Brueggeman, R.S., Yan, C., Zhu, Y., Koladia, V., Friesen, T.L. 2014. Evaluation of a Pyrenophora teres f. teres mapping population reveals multiple independent interactions with a region of barley chromosome 6H. Fungal Genetics and Biology. 70:104-112.
Necrotrophic effector-triggered susceptibility (NETS) underlies the barley-Pyrenophora teres f. teres interaction specific to chromosome 6H Reprint Icon -
Liu, Z., Holmes, D.J., Faris, J.D., Chao, S., Brueggeman, R., Edwards, M.C., Friesen, T.L. 2015. Necrotrophic effector-triggered susceptibility (NETS) underlies the barley-Pyrenophora teres f. teres interaction specific to chromosome 6H. Molecular Plant Pathology. 16(2):188-200.
Rewiring the wheat reproductive system to harness heterosis for the next wave of yield improvements Reprint Icon -
Gornicki, P., Faris, J.D. 2014. Rewiring the wheat reproductive system to harness heterosis for the next wave of yield improvements. Proceedings of the National Academy of Sciences. 111:9024-9025.
Map-based analysis of the tenacious glume gene Tg-B1 of wild emmer and its role in wheat domestication Reprint Icon -
Faris, J.D., Zhang, Z., Chao, S. 2014. Map-based analysis of the tenacious glume gene Tg-B1 of wild emmer and its role in wheat domestication. Gene. 542:198-208.
Molecular and comparative mapping of genes governing spike compactness inherited from wild emmer wheat Reprint Icon -
Faris, J.D., Zhang, Z., Garvin, D.F., Xu, S.S. 2014. Molecular and comparative mapping of genes governing spike compactness inherited from wild emmer wheat. Molecular Genetics and Genomics. 289:641-651.
A dimeric PR-1-type pathogenesis-related protein interacts with ToxA and potentially mediates ToxA-induced necrosis in sensitive wheat Reprint Icon -
Lu, S., Faris, J.D., Sherwood, R., Friesen, T.L., Edwards, M.C. 2014. A dimeric PR-1-type pathogenesis-related protein interacts with ToxA and potentially mediates ToxA-induced necrosis in sensitive wheat. Molecular Plant Pathology. 15(7):650-663.
New germplasm development using synthetic and other approaches to transfer stem rust resistance from tetraploids to hexaploids -
Xu, S.S., Zhang, Q.J., Klindworth, D.L., Jin, Y., Rouse, M.N., Friesen, T.L., Cai, X., Faris, J.D. 2014. New germplasm development using synthetic and other approaches to transfer stem rust resistance from tetraploids to hexaploids [abstract]. Borlaug Global Rust Initiative Technical Workshop, March 22-25, 2014, Ciudad Obregon, Mexico.
Wheat domestication: Key to agricultural revolutions past and future -
Faris, J.D. 2014. Wheat domestication: Key to agricultural revolutions past and future. In: Tuberosa, R., Graner, A., Frison, E., editors. Genomics of Plant Genetic Resources. Volume 1. Managing, Sequencing and Mining Genetic Resources. Springer. p. 439-464.
Chromosome engineering for alien gene introgression in wheat: Progress and prospective -
Xu, S.S., Niu, Z., Klindworth, D.L., Zhang, Q.J., Chao, S., Friesen, T.L., Jin, Y., Rouse, M.N., Faris, J.D., Cai, X. 2013. Chromosome engineering for alien gene introgression in wheat: Progress and prospective. Triticeae Cytogenetics: Past, Present and Future, September 15-16, 2013, Kyoto, Japan. p. 24-25.
Genetics of tan spot resistance in wheat Reprint Icon -
Faris, J.D., Liu, Z.H., Xu, S.S. 2013. Genetics of tan spot resistance in wheat. Theoretical and Applied Genetics. 126:2197-2217.
Synthetic hexaploids derived from under-exploited tetraploids as a new resource for disease resistance in wheat -
Xu, S.S., Zhang, Q.J., Jin, Y., Rouse, M.N., Liu, Z.H., Friesen, T.L., Pumphrey, M.O., Cai, X., Faris, J.D. 2013. Synthetic hexaploids derived from under-exploited tetraploids as a new resource for disease resistance in wheat. 12th International Wheat Genetics Symposium, September 8-14, 2013, Yokohama, Japan. p. 107.
Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat Reprint Icon -
Akhunov, E.D., Sehgal, S., Liang, H., Wang, S., Akhunova, A.R., Kaur, G., Li, W., Forrest, K.L., See, D., Simkova, H., Ma, Y., Hayden, M.J., Luo, M., Faris, J.D., Dolezel, J., Gill, B.S. 2013. Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat. Plant Physiology. 161:252-265.
Investigation of the role of the necrotrophic effector SnTox1 in virulence in the Stagonospora nodorum-wheat interaction -
Friesen, T.L., Liu, Z.H., Lu, S., Solomon, P.S., Oliver, R.P., Faris, J.D. 2013. Investigation of the role of the necrotrophic effector SnTox1 in virulence in the Stagonospora nodorum-wheat interaction. Plant and Animal Genome Conference, January 12-16, 2013, San Diego, CA.
Dimerization and protease resistance: new insight into the function of PR-1 Reprint Icon -
Lu, S., Faris, J.D., Sherwood, R., Edwards, M.C. 2013. Dimerization and protease resistance: new insight into the function of PR-1. Journal of Plant Physiology. 170:105-110.
SnTox5-Snn5: A novel Stagonospora nodorum effector-wheat gene interaction and its relationship with the SnToxA-Tsn1 and SnTox3-Snn3-B1 interactions Reprint Icon -
Friesen, T.L., Chu, C., Xu, S.S., Faris, J.D. 2012. SnTox5-Snn5: A novel Stagonospora nodorum effector-wheat gene interaction and its relationship with the SnToxA-Tsn1 and SnTox3-Snn3-B1 interactions. Molecular Plant Pathology. 13(9):1101-1109.
Heterologous expression and functional analysis of the wheat group 1 pathogenesis-related (PR-1) proteins -
Dunnell, K.L., Faris, J.D., Friesen, T.L., Edwards, M.C., Lu, S. 2012. Heterologous expression and functional analysis of the wheat group 1 pathogenesis-related (PR-1) proteins. Meeting Abstract. 102:S4.33.
Differential expression of the pathogenesis-related protein 1 (PR-1) gene family in stem rust (Puccinia graminis f. sp. tritici )-wheat interactions -
Lu, S., Friesen, T.L., Faris, J.D. 2012. Differential expression of the pathogenesis-related protein 1 (PR-1) gene family in stem rust (Puccinia graminis f. sp. tritici)-wheat interactions. American Phytopathological Society, August 4-8, 2012, Providence, RI. Available: http://www.apsnet.org/meetings/Documents/2012_Meeting_Abstracts/aps12abP582.htm
Genetic mapping analysis of bread-making quality traits in spring wheat Reprint Icon -
Simons, K., Anderson, J.A., Mergoum, M., Faris, J.D., Klindworth, D.L., Xu, S.S., Sneller, C., Ohm, J.-B., Hareland, G.A., Edwards, M.C., Chao, S. 2012. Genetic mapping analysis of bread-making quality traits in spring wheat. Crop Science. 52:2182-2197.
Tan spot susceptibility governed by the Tsn1 locus and race-nonspecific resistance quantitative trait loci in a population derived from the wheat lines Salamouni and Katepwa Reprint Icon -
Faris, J.D., Abeysekara, N.S., McClean, P.E., Xu, S.S., Friesen, T.L. 2012. Tan spot susceptibility governed by the Tsn1 locus and race-nonspecific resistance quantitative trait loci in a population derived from the wheat lines Salamouni and Katepwa. Molecular Breeding. 30:1669-1678.
Stagonospora nodorum: From pathology to genomics and host resistance Reprint Icon -
Oliver, R.P., Friesen, T.L., Faris, J.D., Solomon, P.S. 2012. Stagonospora nodorum: From pathology to genomics and host resistance. Annual Review of Phytopathology. 50:23-43.
Introgression and characterization of a goatgrass gene for a high level of resistance to Ug99 stem rust in tetraploid wheat Reprint Icon -
Klindworth, D.L., Niu, Z., Chao, S., Friesen, T.L., Jin, Y., Faris, J.D., Cai, X., Xu, S.S. 2012. Introgression and characterization of a goatgrass gene for a high level of resistance to Ug99 stem rust in tetraploid wheat. Genes|Genomes|Genetics. 2:665-673.
Integration of DNA markers with chromosome engineering for efficient introgression of resistance genes from wild grasses into wheat -
Xu, S.S., Niu, Z., Klindworth, D.L., Chao, S., Friesen, T.L., Faris, J.D., Jin, Y., Cai, X., Harris, M.O. 2012. Integration of DNA markers with chromosome engineering for efficient introgression of resistance genes from wild grasses into wheat. Meeting Abstract. pg 15.
Quantitative variation in effector activity of ToxA isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis Reprint Icon -
Tan, K.C., Ferguson-Hunt, M., Rybak, K., Waters, O.D.C., Stanley, W.A., Bond, C.S., Stukenbrock, E.H., Friesen, T.L., Faris, J.D., McDonald, B.A., Oliver, R.P. 2012. Quantitative variation in effector activity of ToxA isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis. Molecular Plant-Microbe Interactions. 25:515-522.
The cysteine rich necrotrophic effector SnTox1 produced by Stagonospora nodorum triggers susceptibility of wheat lines harboring Snn1 -
Liu, Z., Zhang, Z., Faris, J.D., Oliver, R.P., Syme, R., Mcdonald, M.C., Mcdonald, B.A., Solomon, P.S., Lu, S., Shelver, W.L., Xu, S.S., Friesen, T.L. 2012. The cysteine rich necrotrophic effector SnTox1 produced by Stagonospora nodorum triggers susceptibility of wheat lines harboring Snn1. PLoS Pathogens. 8(1):e1002467.
Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat -
Zhang, Z., Belcram, H., Gornicki, P., Charles, M., Just, J., Huneau, C., Magdelenat, G., Couloux, A., Samain, S., Gill, B.S., Rasmussen, J.B., Barbe, V., Faris, J.D., Chalhoub, B. 2011. Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat. Proceedings of the National Academy of Sciences. 108:18737-18742.
Variable expression of the Stagonospora nodorum effector SnToxA among isolates is correlated with levels of disease susceptibility in wheat -
Faris, J.D., Zhang, Z., Rasmussen, J.B., Friesen, T.L. 2011. Variable expression of the Stagonospora nodorum effector SnToxA among isolates is correlated with levels of disease susceptibility in wheat. Molecular Plant-Microbe Interactions. 24:1419-1426.
Identification and molecular mapping of two QTLs with major effects for resistance to Fusarium head blight in wheat -
Chu, C., Niu, Z., Zhong, S., Chao, S., Friesen, T.L., Halley, S., Elias, E.M., Dong, Y., Faris, J.D., Xu, S.S. 2011. Identification and molecular mapping of two QTLs with major effects for resistance to Fusarium head blight in wheat. Theoretical and Applied Genetics. 123(7):1107-1119.
Whole genome QTL analysis of Stagonospora nodorum blotch resistance and validation of the SnTox4-Snn4 interaction in hexaploid wheat -
Abeysekara, N., Faris, J.D., Chao, S., Mcclean, P., Friesen, T.L. 2012. Whole genome QTL analysis of Stagonospora nodorum blotch resistance and validation of the SnTox4-Snn4 interaction in hexaploid wheat. Phytopathology. 102:94-104.
Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.) -
Lu, S., Friesen, T.L., Faris, J.D. 2011. Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.). Molecular Genetics and Genomics. 285:485-503.
New broad-spectrum resistance to septoria tritici blotch derived from synthetic hexaploid wheat -
Ghaffary, S.T., Faris, J.D., Friesen, T.L., Visser, R.G., Van Der Lee, T.A., Robert, O., Kema, G.H. 2011. New broad-spectrum resistance to septoria tritici blotch derived from synthetic hexaploid wheat. Journal of Theoretical and Applied Genetics. 124:125-142.
Characterization of plant – fungal interactions involving necrotrophic effector-producing plant pathogens -
Friesen, T.L., Faris, J.D. 2012. Characterization of plant – fungal interactions involving necrotrophic effector-producing plant pathogens. In: Bolton, M.D., Thomma, B.P.H.J. editors. Plant Fungal Pathogens: Methods and Protocols. New York, NY: Humana Press. p. 191-207.
Chromosome engineering of wheat stem rust resistance gene Sr47 in a tetraploid wheat background -
Klindworth, D.L., Niu, Z., Chao, S., Friesen, T.L., Faris, J.D., Jin, Y., Cai, X., Xu, S.S. 2011. Chromosome engineering of wheat stem rust resistance gene Sr47 in a tetraploid wheat background. Meeting Abstract. pg. 182.
Fighting against FHB – an excellent novel resistance source for future wheat breeding -
Chu, C., Zhong, S., Chao, S., Friesen, T.L., Halley, S., Elias, E.M., Faris, J.D., Xu, S.S. 2010. Fighting against FHB – an excellent novel resistance source for future wheat breeding. Meeting Abstract. pg. 14.
Marker Development and Saturation Mapping of the Tan Spot Ptr ToxB Sensitivity locus Tsc2 in Hexaploid Wheat -
Abeysekara, N.S., Friesen, T.L., Liu, Z., Mcclean, P.E., Faris, J.D. 2010. Marker Development and Saturation Mapping of the Tan Spot Ptr ToxB Sensitivity locus Tsc2 in Hexaploid Wheat. The Plant Genome. 3:179-189.
Two Putatively Homoeologous Wheat Genes Mediate Recognition of SnTox3 to Confer Effector-triggered Susceptibility to Stagonospora nodorum -
Zhang, Z., Friesen, T.L., Xu, S.S., Shi, G., Liu, Z., Rasmussen, J., Faris, J.D. 2011. Two Putatively Homoeologous Wheat Genes Mediate Recognition of SnTox3 to Confer Effector-triggered Susceptibility to Stagonospora nodorum. Plant Journal. 65:27-38.
A Unique Wheat Disease Resistance-like Gene Governs Effector-Induced Susceptibility to Necrotrophic pathogens -
Faris, J.D., Zhang, Z., Lu, H., Lu, S., Cloutier, S., Fellers, J.P., Meinhardt, S.W., Rasmussen, J.B., Xu, S.S., Oliver, R.P., Simons, K.J., Friesen, T.L. 2010. A Unique Wheat Disease Resistance-like Gene Governs Effector-Induced Susceptibility to Necrotrophic pathogens. Proceedings of the National Academy of Sciences. 107:13544-13549.
Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum) -
Wiebe, K., Pozniak, C.J., Harris, N., Faris, J.D., Clarke, J.M., Knox, R.E., Taylor, G. 2010. Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum). Theoretical and Applied Genetics. 121:1047-1058.
Variation in Kernel Characteristics and Protein Molecular Weight Distribution of Langdon Durum–Wild Emmer Wheat Chromosome Substitution Lines -
Ohm, J., Klindworth, D.L., Hareland, G.A., Faris, J.D., Elias, M., Xu, S.S. 2010. Variation in Kernel Characteristics and Protein Molecular Weight Distribution of Langdon Durum–Wild Emmer Wheat Chromosome Substitution Lines. Journal of Cereal Science. 52:207-214.
Development of Expressed Sequence Tag (EST)–based Markers for Genomic Analysis of a Barley 6H Region Harboring Multiple Net Form Net Blotch Resistance Genes Reprint Icon -
Liu, Z., Faris, J.D., Edwards, M.C., Friesen, T.L. 2010. Development of Expressed Sequence Tag (EST)–based Markers for Genomic Analysis of a Barley 6H Region Harboring Multiple Net Form Net Blotch Resistance Genes. The Plant Genome. 3:41-52
Dissection of effector-induced host susceptibility pathways in Stagonospora nodorum blotch of wheat -
Lu, S., Friesen, T.L., Faris, J.D. 2010. Dissection of effector-induced host susceptibility pathways in Stagonospora nodorum blotch of wheat.Phytopathology 100:S151
Genetic Variation of Seed Dormancy in Synthetic Hexaploid Wheat-Derived Populations -
Gu, X., Zhang, L., Glover, K., Chu, C., Xu, S.S., Faris, J.D., Friesen, T.L., Ibrahim, A. 2010. Genetic Variation of Seed Dormancy in Synthetic Hexaploid Wheat-Derived Populations. Crop Science. 50:1318-1324.
Marker-assisted Characterization of Durum Wheat Langdon-Golden Ball Disomic Substitution Lines -
Xu, S.S., Chu, C.G., Chao, S., Klindworth, D.L., Faris, J.D., Elias, E.M. 2010. Marker-assisted Characterization of Durum Wheat Langdon-Golden Ball Disomic Substitution Lines. Theoretical and Applied Genetics.120:1575-1585
Genetic Analysis of Disease Susceptibility Caused by Compatible Tsn1-SnToxA and Snn1-SnTox1 Interactions in the Wheat-Stagonospora Nodorum Pathosystem -
Chu, C.G., Faris, J.D., Xu, S.S., Friesen, T.L. 2010. Genetic Analysis of Disease Susceptibility Caused by Compatible Tsn1-SnToxA and Snn1-SnTox1 Interactions in the Wheat-Stagonospora Nodorum Pathosystem. Theoretical and Applied Genetics. 120:1451-1459
Characterization Of The Wheat-Stagonospora nodorum Disease System - What Is The Molecular Basis of This Quantitative Necrotrophic Disease Interaction -
Friesen, T.L., Faris, J.D. 2010. Characterization Of The Wheat-Stagonospora nodorum Disease System - What Is The Molecular Basis of This Quantitative Necrotrophic Disease Interaction. Canadian Journal of Plant Pathology 32:20-28
Identification of Chromosome Locations of Genes Affecting pre-Harvest Sprouting and Seed Dormancy using Chromosome Substitution Lines in Tetraploid Wheat (Triticum turgidum L.) -
Chao, S., Xu, S.S., Elias, E., Faris, J.D., Sorrells, M. 2010. Identification of Chromosome Locations of Genes Affecting pre-Harvest Sprouting and Seed Dormancy using Chromosome Substitution Lines in Tetraploid Wheat (Triticum turgidum L.). Crop Science. 50:1180-1187
Pathogen Exploitation of Gene-for-Gene Resistance Mechanisms in the Wheat-Stagonospora nodorum Pathosystem -
Faris, J.D., Zhang, Z., Lu, S., Lu, H., Reddy, L., Cloutier, S., Fellers, J.P., Meinhardt, S.W., Rasmussen, J.B., Xu, S.S., Simons, K.J., Friesen, T.L. 2010. Pathogen Exploitation of Gene-for-Gene Resistance Mechanisms in the Wheat-Stagonospora nodorum Pathosystem. Meeting Abstract. pg.136
Two Homoeologous Wheat Genes Confer Sensitivity to a Single Host-Selective Toxin and Susceptibility to Stagonospora nodorum blotch (SNB) -
Zhang, Z., Friesen, T.L., Shi, G., Rasmussen, J.B., Faris, J.D. 2010. Two Homoeologous Wheat Genes Confer Sensitivity to a Single Host-Selective Toxin and Susceptibility to Stagonospora nodorum blotch (SNB). Meeting Abstract. pg 188
Identification and Characterization of a Novel Host-Toxin Interaction in the Wheat - Stagonospora Nodorum Pathosystem -
Abeysekara, N., Friesen, T.L., Keller, B., Faris, J.D. 2009. Identification and Characterization of a Novel Host-Toxin Interaction in the Wheat - Stagonospora Nodorum Pathosystem. Theoretical and Applied Genetics. 120:117-126
Identification of Novel Tan Spot Resistance QTLs Using an SSR-Based Linkage Map of Tetraploid Wheat -
Chu, C., Chao, S., Friesen, T.L., Faris, J.D., Zhong, S., Xu, S.S. 2009.Novel Tan Spot Resistance QTLs Detected Using an SSR-Based Linkage Map of Tetraploid Wheat. Molecular Breeding. 25:327-338.
SnTox3 Acts in Effector Triggered Susceptibility to Induce Disease on Wheat Carrying the Snn3 Gene -
Liu, Z., Faris, J.D., Oliver, R.P., Tan, K., Solomon, P.S., Mcdonald, M.C., Mcdonald, B.A., Nunez, A., Lu, S., Rasmussen, J.B., Friesen, T.L. 2009. SnTox3 Acts in Effector Triggered Susceptibility to Induce Disease on Wheat Carrying the Snn3 Gene. PLoS Pathogens. 5:(9) 1-15
Re-Evaluation of a Tetraploid Wheat Population Indicates That the Tsn1-ToxA Interaction is the Only Factor Governing Stagonospora Nodorum Blotch Susceptibility -
Faris, J.D., Friesen, T.L. 2009. Re-Evaluation of a Tetraploid Wheat Population Indicates That the Tsn1-ToxA Interaction is the Only Factor Governing Stagonospora Nodorum Blotch Susceptibility. Phytopathology. 99:(8) 906-912
Identification of ToxA-Interacting Proteins Suggests a Possible Role for Pathogenesis-Related Protein 1(PR-1) in Mediating Stagonospora Nodorum-wheat Interactions -
Lu, S., Friesen, T.L., Faris, J.D. 2009. Identification of ToxA-Interacting Proteins Suggests a Possible Role for Pathogenesis-Related Protein 1(PR-1) in Mediating Stagonospora Nodorum-wheat Interactions. Meeting Abstract. p. 97.
Identification of Novel QTL for Seeding and Adult Plant Leaf Rust Resistance in a Wheat Doubled Haploid Population -
Chu, C.G., Friesen, T.L., Xu, S.S., Faris, J.D., Kolmer, J.A. 2009. Identification of Novel QTL for Seeding and Adult Plant Leaf Rust Resistance in a Wheat Doubled Haploid Population. Theoretical and Applied Genetics. 119:263-269
Agronomic and Quality Characteristics of Two New Sets of Langdon Durum – wWld Emmer Wheat Chromosome Substitution Lines -
Klindworth, D.L., Hareland, G.A., Elias, E.M., Faris, J.D., Chao, S., Xu, S.S. 2009. Agronomic and Quality Characteristics of Two New Sets of Langdon Durum – wWld Emmer Wheat Chromosome Substitution Lines. Journal of Cereal Science 50: 29-35
Host-selective toxins produced by Stagonospora nodorum confer disease susceptibility in adult wheat plants under field conditions -
Friesen, T.L., Chu, C.G., Liu, Z.H., Xu, S.S., Halley, S., Faris, J.D. 2009. Host-selective toxins produced by Stagonospora nodorum confer disease susceptibility in adult wheat plants under field conditions. Theoretical and Applied Genetics. 118:1489-1497
Development and characterization of expressed sequence tag (EST)-derived microsatellite markers for the wheat stem rust fungus, Puccinia graminis f.sp. tritici -
Zhong, S., Leng, Y., Friesen, T.L., Faris, J.D., Szabo, L.J. 2009. Development and characterization of expressed sequence tag (EST)-derived microsatellite markers for the wheat stem rust fungus, Puccinia graminis f.sp. tritici. Phytopathology 99:282-289.
The concurrence of Stagonospora nodorum blotch resistance with host-selective toxin insensitivity in tetraploid wheat -
Chu, C., Friesen, T.L., Chao, S., Faris, J.D., Xu, S.S. 2008. The concurrence of Stagonospora nodorum blotch resistance with host-selective toxin insensitivity in tetraploid wheat. National Wheat Genomics Conference. p. 9 (NWGC), December 4-6, 2008, Indianapolis, IN
A Point Mutation Demonstrating the Pleiotropic Effects of the Domestication Gene Q in Hexaploid Wheat -
Zhang, Z., Gill, B.S., Faris, J.D. 2008. A Point Mutation Demonstrating the Pleiotropic Effects of the Domestication Gene Q in Hexaploid Wheat. Plant and Animal Genome Conference XVII, p. 686
Map-Based Cloning of the Fungal Toxin Sensitivity Gene Tsn1 in Wheat -
Faris, J.D., Zhang, Z., Lu, H., Reddy, L., Lu, S., Simons, K.J., Fellers, J.P., Friesen, T.L. 2009. Map-Based Cloning of the Fungal Toxin Sensitivity Gene Tsn1 in Wheat. Plant and Animal Genome Conference XVII abstracts p. 305
Development and characterization of expressed sequence tag (EST)-derived microsatellite markers for the wheat stem rust fungus, Puccinia graminis f. sp. tritici -
Zhong, S., Leng, Y., Friesen, T.L., Faris, J.D., Szabo, L.J. 2008. Development and characterization of expressed sequence tag (EST)-derived microsatellite markers for the wheat stem rust fungus, Puccinia graminis f. sp. tritici. APS Annual Meeting. 98(6):S180
Molecular and cytogenetic characterization of a durum wheat Aegilops speltoides chromosome translocation conferring resistance to stem rust -
Faris, J.D., Xu, S.S., Xiwen, C., Friesen, T.L., Jin, Y. 2008. Molecular and cytogenetic characterization of a durum wheat Aegilops speltoides chromosome translocation conferring resistance to stem rust. Chromosome Research. 16(8): 1097-1105.
A region of barley chromosome 6H harbors multiple major genes associated with net type blotch resistance. -
Abu, Q.M., Liu, Z., Faris, J.D., Chao, S., Edwards, M.C., Lai, Z., Franckowiak, J.D., Friesen, T.L. 2008. A region of barley chromosome 6H harbors multiple major genes associated with net type blotch resistance. Theoretical and Applied Genetics. 117:1261-1270
Chromosome Location and Characterization of Genes for Grain Protein Content in Triticum dicoccoides -
Xu, S.S., D.L. Klindworth, G.A. Hareland, E.M. Elias, J.D. Faris, and S. Chao. 2008. Chromosome location and characterization of genes for grain protein content in Triticum dicoccoides. In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Int. Wheat Genet. Symp., vol. 2. Sydney University Press, Sydney, Australia. Pp 572-574.
Identification of chromosomes responsible for crown rot resistance in durum wheat -
Zheng, Z., H.B. Li, J. Ma, S. Chakraborty, J.D. Faris, S.S. Xu, and C.J. Liu. 2008. Identification of chromosomes responsible for crown rot resistance in durum wheat. In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Wheat Genet. Symp., vol. 3. Sydney University Press, Sydney, Australia. Pp 770-772.
Development,Identification and Validation of Markers for Mmarker-Assisted Selection Against the Stagonospora nodorum Toxin Ssensitivity Genes Tsn1 and Snn2 in Wheat -
Zhang, Z., Friesen, T.L., Simons, K.J., Xu, S.S., Faris, J.D. 2009. Development,Identification and Validation of Markers for Mmarker-Assisted Selection Against the Stagonospora nodorum Toxin Ssensitivity Genes Tsn1 and Snn2 in Wheat. Molecular Breeding,23:35-49.
IDENTIFICATION, CLONING, AND CHARACTERIZATION OF SNTOX3 USING HETEROLOGOUS EXPRESSION TRANSFORMATION, AND SITE DIRECTED GENE DISRUPTION -
Friesen, T.L., Liu, Z.H., Zhang, Z., Faris, J.D., Solomon, P.S., Tan, K.C., Ferguson, H.M., Oliver, R.P. 2008. Identification, cloning, and characterization of sntox3 using heterologous expression transformation, and site directed gene disruption. Meeting Abstract. 7th Mycosphaerella Stagonospora Symposium, Ascona, Switzerland, August 18-22, 2008
CHARACTERIZATION OF THE ROLE OF HOST-SELECTIVE TOXINS IN THE STAGONOSPORA NODORUM - WHEAT PATHOSYSTEM SHOWS AN INVERSE GENE-FOR-GENE STRUCTURE -
Friesen, T.L., Liu, Z., Zhang, Z., Solomon, P.S., Oliver, R.P., Faris, J.D. 2008. Characterization of the role of host-selective toxins in the stagonospora nodorum - wheat pathosystem shows an inverse gene-for-gene structure. 7th Mycosphaerella Stagonospora Symposium in Ascona, Switzerland, August 18-22, 2008.
Chromosome engineering to enhance utility of alien-derived stem rust resistance -
Xu, S.S., I.S. Dundas, M.O. Pumphrey, Y. Jin, J.D. Faris, X. Cai, L.L. Qi, B.R. Friebe, and B.S. Gill. 2008. Chromosome engineering to enhance utility of alien-derived stem rust resistance. In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Int. Wheat Genet. Symp., vol. 1. Sydney University Press, Sydney, Australia. Pp 12-14.
Identification of novel tan spot resistance loci beyond the known host-selective toxin insensitivity genes in wheat -
Chu, C., Friesen, T.L., Xu, S.S., Faris, J.D. 2008. Identification of novel tan spot resistance loci beyond the known host-selective toxin insensitivity genes in wheat. Theoretical and Applied Genetics 117:873-881
Acc homoeoloci and the evolution of wheat genomes -
Chalupska, D., Lee, H.Y., Faris, J.D., Evrard, A., Chalhoub, B., Haselkorn, R., Gornicki, P. 2008. Acc homoeoloci and the evolution of wheat genomes. Proceedings of the National Academy of Sciences. 105:9691-9696
Genetics of host-pathogen interactions in the wheat-Stagonospora nodorum pathosystem -
Faris, J.D., Lu, H.J., Zhang, Z., Liu, Z.H., Xu, S.S., Chu, C.G., Abeysekara, N., Fellers, J.P., Cloutier, S., Keller, B., Scofield, S.R., Friesen, T.L. 2008. Genetics of host-pathogen interactions in the wheat-Stagonospora nodorum pathosystem. International Wheat Conference Proceedings. Australia Aug 24-29
Genomic analysis of the Snn1 locus on wheat chromosome arm 1BS and the identification of candidate genes -
Reedy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Faris, J.D. 2008. Genomic analysis of the Snn1 locus on wheat chromosome arm 1BS and the identification of candidate genes. The Plant Genome. 1:55-66
Host specific toxins; effectors of necrotrophic pathogenicity -
Friesen, T.L., Faris, J.D., Solomon, P.S., Oliver, R.P. 2008. Host specific toxins; effectors of necrotrophic pathogenicity. Cellular Microbiology. 10(7) 1421-1428
Whole Genome Mapping in a Wheat Doubled Haploid Population Using SSRs and TRAPS and the Identification of QTL for Agronomic Traits -
Chu, C., Xu, S.S., Friesen, T.L., Faris, J.D. 2008. Whole Genome Mapping in a Wheat Doubled Haploid Population Using SSRs and TRAPS and the Identification of QTL for Agronomic Traits. Molecular Breeding. 22:251-266
Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q -
Faris, J.D., Zhang, Z., Fellers, J.P., Gill, B.S. 2008. Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q. Functional and Integrative Genomics. 8:149-164
Evaluation of seedling resistance to tan spot and Stagonospora nodorum blotch in tetraploid wheat -
Chu, C.G., Friesen, T.L., Faris, J.D., Xu, S.S. 2008. Evaluation of seedling resistance to tan spot and Stagonospora nodorum blotch in tetraploid wheat. Crop Science. 48:1107-1116
Seedling resistance to tan spot and Stagonospora nodorum leaf blotch in wild emmer wheat (Triticum dicoccoides) -
Chu, C.G., Xu, S.S., Faris, J.D., Nevo, E., Friesen, T.L. 2007. Seedling resistance to tan spot and Stagonospora nodorum leaf blotch in wild emmer wheat (Triticum dicoccoides). Plant Disease. 92:1239-1236
The emergence of tan spot disease caused by toxigenic Pyrenophora tritici-repentis in Australia is not associated with increased deployment of toxin-sensitive cultivors. -
Oliver, R.P., Lord, M., Rybak, K., Faris, J.D., Solomon, P.S. 2008. The emergence of tan spot disease caused by toxigenic Pyrenophora tritici-repentis in Australia is not associated with increased deployment of toxin-sensitive cultivors.. Phytopathology. 98:488-191
Genetic characterization of a novel wheat-Stagonospora nodorum host-selective toxin interaction and it role in disease susceptibility -
Friesen, T.L., Zhang, Z., Solomon, P.S., Oliver, R.P., Faris, J.D. 2008. Genetic characterization of a novel wheat-Stagonospora nodorum host-selective toxin interaction and it role in disease susceptibility. Plant Physiology. 146:682-693
Identification of seed dormancy for four populations derived from synthetic hexaploid wheat -
Gu, X., Ren, S., Chu, C., Glover, K., Xu, S.S., Faris, J.D., Friesen, T.L., Ibrahim, A. 2007. Identification of seed dormancy for four populations derived from synthetic hexaploid wheat. Plant and Animal Genome Conference. December 1-2, 2007 Kansas City MO.
Progress Toward Map-Based Cloning of an Avirulence Gene from Pyrenophora teres f. teres -
Liu, Z., Faris, J.D., Edwards, M.C., Friesen, T.L. 2008. Progress Toward Map-Based Cloning of an Avirulence Gene from Pyrenophora teres f. teres. International Congress of Plant Pathology Abstracts and Proceedings. 90(S2):229
Stagonospora nodorum utilizes a sophisticated inverse gene-for-gene system involving proteinaceous host-selective toxins interacting with dominant wheat sensitivity genes -
Friesen, T.L., Faris, J.D., Liu, Z., Solomon, P.S., Oliver, R.P. 2008. Stagonospora nodorum utilizes a sophisticated inverse gene-for-gene system involving proteinaceous host-selective toxins interacting with dominant wheat sensitivity genes. 9th International Congress of Plant Pathology Abstracts and Proceedings, Torino, Italy, AUg 24-29, 2008.
Multiple host-specific toxins, lateral gene transfer and gene loss in the evolution of cereal Pleosporalean pathogens -
Oliver, R.P., Solomon, P.S., Hane, J., Ferguson-Hunt, M., Mcdonald, B.A., Faris, J.D., Friesen, T.L. 2008. Multiple host-specific toxins, lateral gene transfer and gene loss in the evolution of cereal Pleosporalean pathogens. International Congress of Plant Pathology Abstracts and Proceedings. Torino, Italy, August 24-29, 2008.
Progress towards the construction of a sequence-ready physical map of the 3AS chromosome arm of hexaploid wheat -
Gill, B., Li, W., Sehgal, S.K., Faris, J.D., Reddy, L., Devos, K.M., Buell, R., Gornicki, P., Rabinowicz, P.D., Dolezel, J., Simkova, H., Safar, J., Ma, Y., Chen, F., Lucretti, S., You, F.M., Luo, M. 2008. Progress towards the construction of a sequence-ready physical map of the 3AS chromosome arm of hexaploid wheat. Plant and Animal Genome Conference XVI abstracts pg. 9
Molecular Mapping of the leaf rust resistance gene Lr17a in Wheat -
Barrett, B., Faris, J.D., Fellers, J.P. 2008. Molecular Mapping of the leaf rust resistance gene Lr17a in Wheat. Crop Science.48:1124-1128.
Genetics and Genomics of Wheat Domestication-Driven Evolution -
Gill, B., Li, W., Sood, S., Kuraparthy, V., Friebe, B., Simons, K.J., Zhang, Z., Faris, J.D. 2008. Genetics and Genomics of Wheat Domestication-Driven Evolution Israel Journal of Plant Science. 55:223-229
Wheat-rice colinearity and chromosome walking at the Snn1 locus in wheat -
Reddy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Scofield, S.R., Faris, J.D. 2007. Wheat-rice colinearity and chromosome walking at the Snn1 locus in wheat. Meeting Abstract. National Wheat Genomics Conference Abstracts. pg 28
Exploring the functional roles of the Q gene homoeoalleles in wheat -
Zhang, Z., Simons, K.J., Gill, B.S., Faris, J.D. 2007. Exploring the functional roles of the Q gene homoeoalleles in wheat. Meeting Abstract. National Wheat Genomics Abstracts pg. 6
Toward a better understanding of a major FHB resistance QTL in tetraploid wheat -
Zhu, X., Chen, X., Faris, J.D., Hu, J., Stack, R.S., Adhikari, T., Elias, E.M., Kianian, S.F., Cai, X. 2007. Toward a better understanding of a major FHB resistance QTL in tetraploid wheat. Meeting Abstract. National Wheat Genomics Conference abstracts p. 12
Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q -
Faris, J.D., Zhang, Z., Fellers, J.P., Gill, B.S. 2008. Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q. Plant and Animal Genome Conference XVI abstract pg. 262.
Whole genome mapping and QTL analysis in a doubled haploid population derived from the cross between a synthetic hexaploid wheat and hard red spring wheat -
Chu, C., Xu, S.S., Friesen, T.L., Faris, J.D. 2007. Whole genome mapping and QTL analysis in a doubled haploid population derived from the cross between a synthetic hexaploid wheat and hard red spring wheat. Meeting Abstract. National Wheat Conference Abstract pg 20.
Genomic analysis of the Tsn1 locus and the identification of candidate genes -
Faris, J.D., Lu, H., Zhang, Z., Reddy, L., Fellers, J.P., Friesen, T.L. 2008. Genomic analysis of the Tsn1 locus and the identification of candidate genes. Plant and Animal Genome ConferenceXVI abstracts pg. 305
Genetic analysis of host-toxin interactions in the wheat-Stagonospora nodorum pathosystem -
Faris, J.D., Friesen, T.L., Lu, H., Reddy, L., Zhang, Z., Liu, Z., Xu, S.S., Meinhardt, S.W., Fellers, J.P., Oliver, R.P., Solomon, P.S., Chao, S., Chu, C., Abeysekara, N., Scofield, S.R. 2007. Genetic analysis of host-toxin interactions in the wheat-Stagonospora nodorum pathosystem. Meeting Abstract. National Wheat Genomics Conference abstracts pg. 11
ITEMS FROM NORTH DAKOTA: USDA-ARS CEREAL CROPS RESEARCH UNIT -
Faris, J.D., Xu, S.S., Friesen, T.L., Klindworth, D.L., Simons, K.J., Chao, S. 2007. Items from north dakota: usda-ars cereal crops research unit. 2007 Annual Wheat Newsletter. pg. 141-148
Identification and Characterization of Segregation Distortion Loci Along Chromosome 5B in Tetraploid Wheat -
Kumar, S., Gill, B.S., Faris, J.D. 2007. Identification and Characterization of Segregation Distortion Loci Along Chromosome 5B in Tetraploid Wheat. Molecular Genetics and Genomics. 278:187-196.
The Stagonospora nodorum-wheat pathosystem is an inverse gene-for-gene system involving multiple proteinaceous host-selective toxins -
Friesen, T.L., Meinhardt, S.W., Faris, J.D. 2007. The Stagonospora nodorum-wheat pathosystem involves multiple proteinaceous host-selective toxins and corresponding host sensitivity genes that interact in an inverse gene-for gene manner. Plant Journal. 51:681-692.
GENETIC MAPPING AND QTL ANALYSIS OF PYREONPHORA TERES F. TERES GENES CONFERRING AVIRULENCE ON BARLEY. -
Lai, Z., Faris, J.D., Weiland, J.J., Steffenson, B.J., Friesen, T.L. 2007. Genetic mapping of Pyreonphora teres f. teres genes conferring avirulence on barley. Fungal Genetics and Biology. 44:323-329.
Stagonospora nodorum utilizes multiple proteinaceous host selective toxins which interact with dominant host sensitivity genes in wheat -
Friesen, T.L., Faris, J.D., Oliver, R.P. 2007. Stagonospora nodorum utilizes multiple proteinaceous host selective toxins which interact with dominant host sensitivity genes in wheat. Meeting Abstract. 24th Fungal Genetics Conference. p. 168.
The initiation of map-based cloning of an avirulence gene from Pyrenophora teres -
Liu, Z., Faris, J.D., Edwards, M.C., Friesen, T.L. 2006. The initiation of map-based cloning of an avirulence gene from Pyrenophora teres. Meeting Abstract. 24th Fungal Genetics Conference. p. 159.
Interspecific transfer of host-specific toxin genes in Stagonospora nodorum -
Oliver, R.P., Solomon, P.S., Hane, J., Stukenbrock, E.H., Mcdonald, B.A., Liu, Z., Faris, J.D., Friesen, T.L. 2007. Interspecific transfer of host-specific toxin genes in Stagonospora nodorum. Meeting Abstract. 24th Fungal Genetics Conference. p. 61.
Identification of a novel Fusarium head blight resistance QTL on chromosome 7A in tetraploid wheat -
Kumar, S., Stack, R.W., Friesen, T.L., Faris, J.D. 2007. Identification of a novel Fusarium head blight resistance QTL on chromosome 7A in tetraploid wheat. Phytopathology. 97:592-597.
Functional Characterization of Ptr ToxA and Molecular Identification of its Intracellular Targeting Protein in Wheat -
Tai, Y., Bragg, J., Lu, H., Edwards, M.C., Faris, J.D., Friesen, T.L., Meinhardt, S.W. 2007. Functional Characterization of Ptr ToxA and Molecular Identification of its Intracellular Targeting Protein in Wheat. Plant and Animal Genome VX Conference Abstracts. p.
Delineation of the wheat Tsn1 candidate gene region -
Lu, H., Fellers, J.P., Tai, Y., Meinhardt, S.W., Friesen, T.L., Faris, J.D. 2007. Delineation of the wheat Tsn1 candidate gene region. Plant and Animal Genome VX Conference Abstracts. p. 174.
Identification of a novel Fusarium head blight resistance QTL on chromosome 7A in tetraploid wheat -
Faris, J.D., Kumar, S., Friesen, T.L. 2007. Identification of a novel Fusarium head blight resistance QTL on chromosome 7A in tetraploid wheat. Plant and Animal Genome VX Conference Abstracts. p. 179.
Genomic analysis of the Snn1 locus on the short arm of chromosome 1B in wheat -
Reddy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Faris, J.D. 2007. Genomic analysis of the Snn1 locus on the short arm of chromosome 1B in wheat. Plant and Animal Genome VX Conference Abstracts. p. 176.
Molecular characterization of the AP2-like Q gene homoeoallele on chromosome 5D in hexaploid wheat -
Zhang, Z., Simons, K.J., Faris, J.D. 2007. Molecular characterization of the AP2-like Q gene homoeoallele on chromosome 5D in hexaploid wheat. Plant and Animal Genome VX Conference Abstracts. p. 300.
Identification of candidate genes associated with signaling networks regulated by the Q gene in wheat -
Tai, Y., Simons, K.J., Xu, S.S., Faris, J.D. 2007. Identification of candidate genes associated with signaling networks regulated by the Q gene in wheat. Plant and Animal Genome VX Conference Abstracts. p. 300.
The Stagonospora nodorum-wheat pathosystem is an inverse gene for gene system involving multiple proteinaceous host selective toxins -
Friesen, T.L., Faris, J.D., Oliver, R. 2007. The Stagonospora nodorum-wheat pathosystem is an inverse gene for gene system involving multiple proteinaceous host selective toxins. Plant and Animal Genome VX Conference Abstracts. p. 179.
Saturation and comparative mapping of a major Fusarium head blight resistance QTL in tetraploid wheat -
Chen, X., Faris, J.D., Hu, J., Stack, R.W., Adhikari, T., Elias, E.M., Kianian, S.F., Cai, X. 2006. Saturation and comparative mapping of a major Fusarium head blight resistance QTL in tetraploid wheat. Molecular Breeding. 19:113-124.
GENETIC MAPPING OF PYRENOPHORA TERES AVIRULENCE GENES -
Friesen, T.L., Lai, Z., Liu, Z., Faris, J.D., Steffenson, B.J. 2006. Genetic mapping of pyrenophora teres avirulence genes. In: Proceedings of the 3rd International Workshop on Barley Leaf Blight. July 23-27, 2005, Edmonton, Canada. p.
THE TSN1-TOXA INTERACTION IN THE WHEAT-STAGONOSPORA NODORUM PATHOSYSTEM PARALLELS THAT OF THE WHEAT-TAN SPOT SYSTEM -
Liu, Z., Friesen, T.L., Hua, L., Meinhardt, S.W., Oliver, R., Rassmussen, J.B., Faris, J.D. 2007. The tsn1-toxa interaction in the wheat-stagonospora nodorum pathosystem parallels that of the wheat-tan spot system. Genome. 49:1265-1273.
Emergence of a new disease as a result of interspecific virulence gene transfer -
Friesen, T.L., Stukenbrock, E.H., Liu, Z., Meinhardt, S., Ling, H., Faris, J.D., Rasmussen, J.B., Solomon, P.S., McDonald, B.A., Oliver, R.P. 2006. Emergence of a new disease as a result of interspecific virulence gene transfer. Nature Genetics. 38(8):953-956.
IDENTIFICATION AND CHROMOSOMAL LOCATION OF MAJOR GENES FOR RESISTANCE TO PYRENOPHORA TERES F. TERES AND P. TERES F. MACULATA IN BARLEY DOUBLED HAPLOID POPULATION. -
Friesen, T.L., Faris, J.D., Lai, Z., Steffenson, B.J. 2006. Identification and chromosomal location of major genes for resistance to Pyrenophora teres in a doubled-haploid barley population. Genome. 49:855-859
MOLECULAR MAPPING OF HYBRID NECROSIS GENES NE1 AND NE2 IN HEXAPLOID WHEAT USING MICROSATELLITE MARKERS. -
Chu, C.-G, Faris, J.D., Friesen, T.L., Xu, S.S. 2006. Molecular mapping of hybrid necrosis genes Ne1 and Ne2 in hexaploid wheat using microsatellite markers. Theoretical and Applied Genetics. 112:1374-1381.
GENOMIC ANALYSIS AND MARKER DEVLOPMENT FOR THE TSN1 LOCUS IN WHEAT USING BIN-MAPPED ESTS AND FLANKING BAC CONTIGS. -
Lu, H., Fellers, J.P., Friesen, T.L., Faris, J.D. 2006. Genomic analysis and marker devlopment for the TSN1 locus in wheat using bin-mapped ests and flanking bac contigs. Theoretical and Applied Genetics. 112:1132-142.
EVALUATION OF MACRO AND MICROCOLINEARITY BETWEEN THE GENOMIC REGION OF WHEAT CHROMOSOME 5B CONTAINING THE TSN1 GENE AND THE RICE GENOME. -
Lu, H., Faris, J.D. 2006. Macro- and microcolinearity between the genomic region of wheat chromosome 5B containing the Tsn1 gene and the rice genome. Functional and Integrative Genomics. 6:90-103.
MOLECULAR TAGGING OF TSN1 IN WHEAT: COMPARING FEASIBILITY OF BIN-MAPPED EST MARKERS WITH AFLP-BSA AND PREVIOUSLY MAPPED RFLPS AND SSRS -
Lu, H., Faris, J.D. Molecular tagging of tsn1 in wheat: comparing feasibility of bin-mapped est markers with aflp-bsa and previously mapped rflps and ssrs. 2005 American Society of Agronomy Abstracts, p. 310.
FUNCTIONAL ANALYSIS OF THE DOMESTICATION GENE Q IN WHEAT. -
Zhang, Z., Tai, Y., Simons, K.J., Fellers, J.P., Gill, B.S., Faris, J.D. 2006. Functional analysis of the domestication gene q in wheat [abstract]. Plant and Animal Genome XIV Conference. Abstact No. P828:307.
IDENTIFICATION OF A FUSARIUM HEAD BLIGHT RESISTANCE QTL ON CHROMOSOME 6B IN TETRAPLOID WHEAT. -
Stack, R., Faris, J.D. 2006. Identification of a fusarium head blight resistance QTL on chromosome 6b in tetraploid wheat [abstract]. Plant and Animal Genome XIV Conference. Abstract No. P285:172.
HIGH-RESOLUTION MAPPING AND CHROMOSOME WALKING AT THE SNN1 LOCUS ON CHROMOSOME 1B IN WHEAT. -
Reddy, L., Friesen, T.L., Meinhardt, S.W., Faris, J.D. 2006. High-resolution mapping and chromosome walking at the snn1 locus on chromosome 1b in wheat [abstract]. Plant and Animal Genome XIV Conference. Abstract No. P349:188.
MOLECULAR MAPPING OF HYBRID NECROSIS GENES NE1 AND NE2 IN HEXAPLOID WHEAT USING MICROSATELLITE MARKERS -
Chu, C., Faris, J.D., Friesen, T.L., Xu, S.S. 2006. Molecular mapping of hybrid necrosis genes Ne1 and Ne2 in hexaploid wheat using microsatellite markers [abstract]. Plant and Animal Genome XIV Conference. Abstract No. P280:171.
APPLICATIONS OF FUNCTIONAL GENOMICS IN STUDIES OF WHEAT DOMESTICATION AND DISEASE RESISTANCE -
Tai, Y., Faris, J.D., Friesen, T.L., Xu, S.S., Meinhardt, S.W., Stack, R.W., Simons, K., Bragg, J., Edwards, M.C. 2006. Applications of functional genomics in studies of wheat domestication and disease resistance [abstracts]. Plant and Animal Genome XIV Conference. Abstract No. P830:307.
SATURATION MAPPING OF THE MAJOR FHB RESISTANCE QTL QFHS.NDSU-3AS IN TETRAPLOID WHEAT -
Chen, X., Faris, J.D., Jinguo, H., Stack, R., Adhikari, T., Kianian, S., Cai, X. 2006. Saturation mapping of the major FHB resistance QTL Qfhs.ndsu-3AS in tetraploid wheat. Plant and Animal Genome XIV Conference Abstracts, P291.
Molecular Characterization of the Major Wheat Domestication Gene Q -
Simons, K.J., Fellers, J.P., Trick, H.N., Zhang, Z., Tai, Y., Gill, B.S., Faris, J.D. 2006. Molecular Characterization of the Major Wheat Domestication Gene Q. Genetics. 172:547-555.
THE WHEAT SUPER DOMESTICATION GENE Q. (WHEAT INFORMATION SERVICE, "FRONTIERS OF BIOSCIENCES") -
Faris, J.D., Simons, K.J., Zhang, Z., Gill, B. 2005. The wheat super domestication gene Q. Frontiers of Wheat Bioscience. 100:129-148.
A NEW HOST SELECTIVE TOXIN PRODUCED BY STAGONOSPORA NODORUM AND ITS SIGNIFICANCE IN DISEASE USING A SEGREGATING WHEAT MAPPING POPULATION. -
Friesen, T.L., Faris, J.D., Meinhardt, S.W. 2005. A new host selective toxin produced by stagonospora nodorum and its significance in disease using a segregating wheat mapping population. American Phytopathological Society Abstracts. Vol. 95:S32.
GENOMIC MAPPING OF TOXIN SENSITIVITY AND QUANTITATIVE TRAIT LOCI FOR SEEDLING RESISTANCE TO STAGONOSPORA NODORUM IN WHEAT. -
Liu, Z.H., Friesen, T.L., Ling, H., Meinhardt, S.W., Rasmussen, J.B., Faris, J.D. 2006. Genomic mapping of toxin sensitivity and quantitative trait loci for seedling resistance to stagonospora nodorum in wheat. Phytopathology. 95:S62
A WHEAT INTERVARIETAL GENETIC LINKAGE MAP BASED ON MICROSATELLITE AND TARGET REGION AMPLIFIED POLYMORPHISM MARKERS AND ITS UTILITY FOR DETECTING QUANTITATIVE TRAIT LOCI. -
Liu, Z., Anderson, J.A., Hu, J., Friesen, T.L., Rasmussen, J.B., Faris, J.D. 2005. A wheat intervarietal genetic linkage map based on microsatellite and target region amplified polymorphism markers and its utility for detecting quantitative trait loci. Theoretical and Applied Genetics. Vol. 111:792-794.
MOLECULAR CYTOGENETIC CHARACTERIZATION AND SEED STORAGE PROTEIN ANALYSIS OF 1A/1D TRANSLOCATION IN DURUM WHEAT. -
Xu, S.S., Faris, J.D., Cai, X., Klindworth, D.L. 2005. Molecular cytogenetic characterization and seed storage protein analysis of 1a/1d translocation in durum wheat. Chromosome Research. 13:559-568.
IDENTIFICATION OF QUANTITATIVE TRAIT LOCI FOR RACE-NONSPECIFIC RESISTANCE TO TAN SPOT IN WHEAT. -
Faris, J.D., Friesen, T.L. 2005. Identification of quantitative trait loci for race-nonspecific resistance to tan spot in wheat. Theoretical and Applied Genetics. Vol. 111:386-392.
MOLECULAR MAPPING OF RESISTANCE TO PYRENOPHORA TRITICI-REPENTIS RACE 5 SENSITIVITY TO PTRTOXB IN WHEAT. -
Faris, J.D., Friesen, T.L. 2004. Molecular mapping of resistance to pyrenophora tritici-repentis race 5 sensitivity to ptrtoxb in wheat.. Plant and Animal Genome Abstracts pg. 186.
MOLECULAR CYTOGENETIC CHARACTERIZATION AND SEED STORAGE PROTEIN ANALYSIS OF 1A/1D TRANSLOCATION LINES OF DURUM WHEAT CARRYING GLU-DLD. -
Xu, S.S., Faris, J.D., Cai, X., Klindworth, D.L. 2004. Molecular cytogenetic characterization and seed storage protein analysis of 1a/1d translocation lines of durum wheat carrying glu-dld.. Plant and Animal Genome Abstracts.[Online.] Available at http://www.intl-pag.org/13/abstracts/PAG13_P239.html. Plant & Animal Genomes XIII Conference, January 15-19, 2005. San Diego,CA.
UTILIZATION OF MOLECULAR MARKERS IN THE CHARACTERIZATION AND DEVELOPMENT OF GERMPLASM OF AND GENETIC STOCKS IN WHEAT. -
Xu, S.S., Faris, J.D., Klindworth, D.L., Cai, X., Hu, J. 2004. Utilization of molecular markers in the characterization and development of germplasm of and genetic stocks in wheat.. Plant and Animal Genome Abstracts. [Online.]Available at http://www.intl-pag.org/13/abstracts/PAG13_W225.html. Plant & Animal Genomes XIII Conference, January 15-19, 2005. San Diego, CA.
TARGETING TSN1 IN WHEAT: COLINEARITY WITYH RICE, CHROMOSOME WALKING, AND MARKER-ASSISTED SELECTION. -
Faris, J.D., Lu, H., Friesen, T.L., Haen, K.M., Fellers, J.P., Xu, S.S., Meinhardt, S.W. 2005. Targeting Tsn1 in wheat: colinearity with rice, chromosome walking, and marker-assisted selection. Plant and Animal Genome Abstracts. p. 195.
A FLORAL HOMEOTIC GENE KEY TO THE DOMESTICATION OF WHEAT. -
Faris, J.D., Simons, K.J., Fellers, J.P., Trick, H.N., Gill, B.S. 2005. A floral homeotic gene key to the domestication of wheat. Plant and Animal Genome Abstracts. p. 186.
MAPPING OF TOXIN SENSITIVITY AND QTL ANALYSIS OF SEEDLING RESISTANCE TO STAGONOSPORA NODORUM BLOTCH IN AN INTERVARIETAL HARD RED SPRING WHEAT POPULATION. -
Liu, Z., Friesen, T.L., Meinhardt, S.W., Rasmussen, J.B., Faris, J.D. 2005. Mapping of toxin sensitivity and QTL analysis of seedling resistance to stagonospora nodorum blotch in an intervarietal hard red spring wheat population. Plant and Animal Genome Abstracts. p. 342.
COMPARATIVE ANALYSES OF A GENE RICH REGION OF WHEAT CHROMOSOME 5B WITH RICE USING EXPRESSED SEQUENCES. -
Lu, H., Faris, J.D. Comparative analyses of a gene rich region of wheat chromosome 5b with rice using expressed sequences.. Plant and Animal Genome XIII Abstracts p. 259.
A HARD RED SPRING WHEAT INTERVARIETAL GENETIC LINKAGE MAP CONSTRUCTED USING MICROSATELLITE AND TARGET REGION AMPLIFICATION POLYMORPHISM (TRAP) MARKERS. -
Liu, Z., Friesen, T.L., Rasmussen, J.B., Hu, J., Faris, J.D. 2005. A hard red spring wheat intervarietal genetic linkage map constructed using microsatellite and target region amplification polymorphism (TRAP) markers.Plant and Animal Genome Abstracts. p.351.
ISOLATION AND CHARACTERIZATION OF THE MAJOR DOMESTICATION GENE Q IN WHEAT. -
Simons, K.J., Fellers, J.P., Trick, H.N., Gill, B.S., Faris, J.D. 2005. Isolation and characterization of the major domestication gene Q in wheat.. Plant and Animal Genome Abstracts. p. 72.
TOWARDS POSITIONAL CLONING OF THE TSN1 GENE IN WHEAT. -
Lu, H., Fellers, J.P., Friesen, T.L., Meinhardt, S.W., Haen, K.M., Faris, J.D. 2005. Towards positional cloning of the Tsn1 gene in wheat. Plant and Animal Genome Abstracts. p. 359.
MAPPING OF A MAJOR NET BLOTCH RESISTANCE GENE IN THE Q21861 X SM89010 DOUBLED HAPLOID POPULATION. -
Friesen, T.L., Faris, J.D., Steffenson, B.J. 2004. Mapping of a major net blotch resistance gene in the Q21861 x SM89010 doubled haploid population.. American Phytopathological Society Abstracts. Vol. 91:532
GENETIC AND PHYSICAL MAPPING OPF A GENE CONDITIONING SENSITIVITY IN WHEAT TO A PARTIALLY PURIFIED HOST-SELECTIVE TOXIN PRODUCED BY STAGONOSPORA NODORUM. -
Liu, Z.H., Faris, J.D., Meinhardt, S.W., Ali, S., Rasmussen, J.B., Friesen, T.L. 2004. Genetic and physical mapping opf a gene conditioning sensitivity in wheat to a partially purified host-selective toxin produced by stagonospora nodorum. Phytopathology. Vol. 94:1056-1060.
QTL ANALYSIS AND MAPPING OF RESISTANCE TO STAGONOSPORA NODORUM LEAF BLOTCH IN WHEAT. -
Liu, Z.H., Friesen, T.L., Rasmussen, J.B., Ali, S., Meinhardt, S.W., Faris, J.D. 2004. Qtl analysis and mapping of seedling resistance to stagonospora nodorum leaf blotch in wheat.. Phytopathology. Vol.94:1061-1067.
POSITIONAL CLONING OF THE Q GENE IN WHEAT (ABSTRACT FOR THE 2004 INTERNATIONAL TRITICEAE MAPPING INITIATIVE WORKSHOP PROCEEDINGS. MPLS MN, MAY 22-25, 2004. -
Faris, J.D., Gill, B.S., Simons, K.J., Fellers, J.P., Trick, H.N. 2004. Positional cloning of the Q gene in wheat. International Triticeae Mapping Initiative Workshop Proceedings. May 22-25, 2004, Minneapolis, MN. 2004 Program Abstracts. p. 22.
GENOME MAPPING -
Faris, J.D., Friebe, B., Gill, B.S. 2004. Genome mapping. Encyclopedia of Grain Science. p. 7-16.
ITEMS FROM NORTH DAKOTA: THE USDA-ARS CEREAL CROPS RESEARCH UNIT. -
Faris, J.D., Friesen, T.L., Xu, S.S. 2004. Items from north dakota: the usda-ars cereal crops research unit.. Wheat Newsletter. vol. 50:252-257
MOLECULAR MAPPING OF RESISTANCE TO PYRENOPHORA TRITICI-REPENTIS RACE 5 AND SENSITIVITY TO PTR TOXB IN WHEAT. -
Friesen, T.L., Faris, J.D. 2004. Molecular mapping of resistance to pyrenophora tritici-repentis race 5 and sensitivity to ptr toxb in wheat.. Theoretical and Applied Genetics. Vol. 109:464-471.
GENOMIC TARGETING AND HIGH-RESOLUTION MAPPING OF THE TSN1 GENE IN WHEAT. -
Haen, K.M., Lu, H., Friesen, T.L., Faris, J.D. 2004. Genomic targeting and high-resolution mapping of the tsn1 gene in wheat. Crop Science. Vol 44:951-962.
MAPPING OF WHEAT SENSITIVITY TO A PARTIALLY PURIFIED HOST-SELECTIVE TOXIN PRODUCED BY STAGONOSPORA NODORUM. -
Liu, Z., Friesen, T.L., Faris, J.D., Meinhardt, S., Ali, S., Rasmussen, J. 2003. Mapping of wheat sensitivity to a partially purified host-selective toxin produced by Stagonospora nodorum. Proceedings of the 6th International Symposium on Septoria/Stagonospora Diseases of Cereals. Dec. 8-12, 2003, Tunis, Tunisia. p. 139-142.
TRAP (TARGET REGION AMPLIFICATION POLYMORPHISM) TECHNIQUE AND ITS APPLICATION TO CROP GENOMICS -
Hu, J., Miller, J.F., Xu, S.S., Faris, J.D., Miklas, P.N., Ochoa, O., Truco, M., Berville, A., Vick, B.A. 2004. Trap (target region amplification polymorphism) technique and its application to crop genomics [abstract]. Plant and Animal Genome XII Abstracts, January 10-14, 2004, San Diego, CA. W169. p. 47.
GENOMIC TARGETING AND HIGH-RESOLUTION MAPPING OF THE TSN1 GENE IN WHEAT. -
Haen, K.M., Lu, H., Friesen, T.L., Faris, J.D. 2004. Genomic targeting and high-resolution mapping of the Tsn1 gene in wheat. 12th Plant and Animal Genome Abstracts. p. 438.
CHROMOSOMAL LOCATION OF GENES FOR NOVEL GLUTENINS AND GLIADINS IN EMMER WHEAT (TRITICUM TURGIDUM L. VAR. DICOCCOIDES). -
Xu, S.S., Khan, K., Klindworth, D.L., Faris, J.D., Nygard, G. 2004. Chromosomal location of genes for novel glutenins and gliadins in emmer wheat (triticum turgidum l. var. dicoccoides). Theoretical and Applied Genetics. Vol. 108:1221-1228.
QTL ANALYSIS AND MAPPING OF RESISTANCE TO STAGONOSPORA NODORUM LEAF BLOTCH IN WHEAT -
Liu, Z., Friesen, T.L., Meinhardt, S., Ali, S., Rasmussen, J.B., Faris, J.D. 2004. QTL analysis and mapping of resistance to Stagonospora nodorum leaf blotch in wheat. 12th Plant and Animal Genome Abstracts. p. 459.
HIGH-THROUGHPUT MARKER IDENTIFICATION AND MAPPING IN WHEAT USING TRAPS (TARGET REGION AMPLIFICATION POLYMORPHISM). -
Faris, J.D., Xu, S.S., Liu, Z., Hu, J. 2004. High-throughput marker identification and mapping in wheat using traps (target region amplification polymorphism). Plant and Animal Genomes XII Conference Abstracts. January 10-14, 2004. San Diego, CA. p. 120.
CHROMOSOMAL LOCATION OF GENES FOR NOVEL GLUTENINS AND GLIADINS IN WILD EMMER WHEAT. -
Xu, S.S., Khan, K., Klindworth, D.L., Faris, J.D., Nygard, G. 2004. Chromosomal location of genes for novel glutenins and gliadins in wild emmer wheat. 12th Plant and Animal Genome Abstracts.p. 178.
GENETIC AND PHYSICAL MAPPING OF A GENE CONDITIONING SENSITIVITY IN WHEAT TO A PARTIALLY PURIFIED HOST-SELECTIVE TOXIN BY STAGONOSPORA NODORUM. -
Liu, Z., Faris, J.D., Meinhardt, S., Ali, S., Rasmussen, J., Friesen, T.L. 2004. Genetic and physical mapping of a gene conditioning sensitivity in wheat to a partially purified host-selective toxin by stagonospora nodorum.. Plant and Animal Genome Abstracts. p.185.
MOLECULAR CLONING OF THE Q LOCUS IN WHEAT. -
Simons, K., Fellers, J.P., Trick, H., Gill, B.S., Faris, J.D. 2004. Molecular cloning of the Q locus in wheat. Plant and Animal Genome Abstracts. p. 110.
THE CONSTRUCTION OF A BAC CONTIG FOR CHROMOSOME WALKING AT THE TSN1 LOCUS IN WHEAT. -
Lu, H., Haen, K., Fellers, J.P., Friesen, T.L., Heinhardt, S., Faris, J.D. 2004. The construction of a BAC contig for chromosome walking at the Tsn1 locus in wheat.. Plant and Animal Genome Abstracts. p. 180.
EVALUATION OF LANGDON DURUM-AEGILOPS TAUSCHII SYNTHETIC HEXAPLOID WHEATS FOR REACTION TO TAN SPOT, STAGONOSPORA LEAF BLOTCH, LEAF RUST, STEM RUST, AND HESSIAN FLY. -
FRIESEN, T.L., XU, S.S., FARIS, J.D., RASMUSSEN, J.B., MILLER, J.D., HARRIS, M. EVALUATION OF LANGDON DURUM-AEGILOPS TAUSCHII SYNTHETIC HEXAPLOID WHEATS FOR REACTION TO TAN SPOT, STAGONOSPORA LEAF BLOTCH, LEAF RUST, STEM RUST, AND HESSIAN FLY.. WHEAT GENETICS INTERNATIONAL SYMPOSIUM PROCEEDINGS. 2003. VOL. 3:1133-1135.
MOLECULAR CHARACTERIZATION OF THE LANGDON DURUM-TRITICUM DICOCCOIDES CHROMOSOME SUBSTITUTION LINES USING TRAP (TARGET REGION AMPLIFICATION POLYMORPHISM) MARKERS -
Xu, S.S., Hu, J., Faris, J.D. 2003. Molecular characterization of the Langdon durum-Triticum dicoccoides chromosome substitution lines using TRAP (target region amplification polymorphism) markers. 10th Wheat Genetics International Symposium Proceedings. September, 1-6, 2003, Paestum, Italy. Abstract not published separately - published in proceedings. Vol. 1:91-94.
MOLECULAR CHARACTERIZATION OF THE LANGDON DURUM-TRITICUM DICOCCOIDES CHROMOSOME SUBSTITUTION LINES USING TARGET REGION AMPLIFICATION POLYMORPHISM (TRAP) MARKERS. -
XU, S.S., HU, J., FARIS, J.D. MOLECULAR CHARACTERIZATION OF THE LANGDON DURUM-TRITICUM DICOCCOIDES CHROMOSOME SUBSTITUTION LINES USING TARGET REGION AMPLIFICATION POLYMORPHISM (TRAP) MARKERS.. WHEAT GENETICS INTERNATIONAL SYMPOSIUM PROCEEDINGS. 2003. VOL. 1:91-94.
EVALUATION OF LANGDON DURUM-AEGILOPS TAUSCHII SYNTHETIC HEXAPLOID WHEATS FOR THEIR SEEDLING REACTION TO TAN SPOT, STAGONASPORA LEAF BLOTCH, LEAF RUST, STEM RUST, AND HESSIAN FLY -
ITEMS FROM NORTH DAKOTA: THE USDA-ARS CEREAL CROPS RESEARCH UNIT -
Faris, J.D., Friesen, T.L., Xu, S.S. 2003. Items from North Dakota: The USDA-ARS Cereal Crops Research Unit. Wheat Newsletter. Vol. 215-218.
A BACTERIAL ARTIFICIAL CHROMOSOME CONTIG SPANNING THE MAJOR DOMESTICATION LOCUS Q IN WHEAT AND IDENTIFICATION OF A CANDIDATE GENE -
FARIS, J.D., FELLERS, J.P., BROOKS, S.A., GILL, B.S. A BACTERIAL ARTIFICIAL CHROMOSOME CONTIG SPANNING THE MAJOR DOMESTICATION LOCUS Q IN WHEAT AND IDENTIFICATION OF A CANDIDATE GENE. GENETICS. 2003. VOL. 164:311-321.
WHEAT GENOMICS: EXPLORING THE POLYPLOID MODEL. -
FARIS, J.D., FRIEBE, B., GILL, B.S. WHEAT GENOMICS: EXPLORING THE POLYPLOID MODEL.. CURRENT GENOMICS. 2002. VOL. 3:577-591.
POLYPLOID GENOME ANALYSIS: GENOMIC TARGETING AND HIGH-RESOLUTION MAPPING OF THE DOMESTICATION GENE Q IN WHEAT. -
Faris, J.D., Gill, B.S. 2002. Polyploid genome analysis: genomic targeting and high-resolution mapping of the domestication gene q in wheat. Genome 45:706-718.
ITEMS FROM NORTH DAKOTA: THE USDA-ARS CEREAL CROPS RESEARCH UNIT -
Faris, J.D., Miller, J.D., Klindworth, D.L. Items from north dakota: the usda-ars cereal crops research unit. Annual Wheat Newsletter 48:249-251.
GENES ENCODING PLASTID ACETYL-COA CARBOXYLASE AND 3-PHOSPHOGLYCERATE KINASE OF THE TRITICUM/AEGILOPS COMPLEX AND THE EVOLUTIONARY HISTORY OF POLYPLOID WHEAT. -
Huang, S., Sirikhachornkit, A., Su, X., Faris, J.D., Gill, B., Haselkorn, R., Gornicki, P. 2002. Genes encoding plastid acetyl-coa carboxylase and 3-phosphoglycerate kinase of the triticum/aegilops complex and the evolutionary history of polyploid wheat. Proceedings of the National Academy of Sciences WA 99:8133-8138.
PHYSICAL AND GENETIC MAPPING OF WHEAT NBS-LRR AND KINASE CLASS RESISTANCE GENE ANALOGS -
MALEKI,L., FELLERS,J.P., FARIS,J.D., BOWDEN,R.L., GILL,B.S., PHYSICAL AND GENETIC MAPPING OF WHEAT NBS-LRR AND KINASE CLASS RESISTANCE GENE ANALOGS, CROP SCIENCE, 2002. 43:660-670.
PHYLOGENETIC ANALYSIS OF THE ACETYL-COA CARBOXYLASE AND 3-PHOSPHOGLYCERATE KINASE LOCI IN WHEAT AND OTHER GRASSES. -
Huang, S., Sirikhachornkit, A., Faris, J.D., Su, X., Gill, B.S., Haselkorn, R., Gornicki, P. 2002. Phylogenetic analysis of the acetyl-coa carboxylase and 3-phosphoglycerate kinase loci in wheat and other grasses. Plant Molecular Biology 48:805-820.
CHROMOSOME MAPPING AND PHYLOGENETIC ANALYSIS OF THE CYTOSOLOC ACETYL-COA CARBOXYLASE LOCI IN WHEAT. -
Faris, J.D., Sirikhachornkit, A., Haselkorn, R., Gill, B., Gornicki, P. 2001. Chromosome mapping and phylogenetic analysis of the cytosoloc acetyl-coa carboxylase loci in wheat. Molecular Biology and Evolution 18:1720-1733.
ISOLATION AND CHARACTERIZATION OF NOVEL CDNA CLONES OF ACIDIC CHITINASES AND BETA-1,3-GLUCANASES FROM WHEAT SPIKES INFECTED BY FUSARIUM GRAMINEARUM. -
Li, W.L., Faris, J.D., Muthukrishnan, S., Liu, D.J., Chen, P.D., Gill, B.S. 2001. Isolation and characterization of novel cdna clones of acidic chitinases and beta-1,3-glucanases from wheat spikes infected by fusarium graminearum. Journal of Theoretical and Applied Genetics 102:353-362.
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