Page Banner

United States Department of Agriculture

Agricultural Research Service

Related Topics

John Yu
Crop Germplasm Research
Genetics

Phone: (979) 260-9237
Fax: (979) 260-9333

2765 F&B ROAD
COLLEGE STATION , TX 77845

Projects
Conservation, Genetic Analyses, and Utilization of Cotton Genetic Resources
Appropriated (D)
  Accession Number: 424619
Developing Genomic and Genetic Tools for Exploiting Cotton Genetic Variation
Appropriated (D)
  Accession Number: 424746
Genome Sequencing of Upland Cotton (Gossypium hirsutum) Genetic Standard
Nonfunded Cooperative Agreement (N)
  Accession Number: 423716
DE NOVO SNP DISCOVERY AND GBS-BASED COTTON GENOME MAP DEVELOPMENT
Specific Cooperative Agreement (S)
  Accession Number: 422744

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Development, genetic mapping and QTL association of cotton PHYA, PHYB, and HY5-specific CAPS and dCAPS markers -
Kushanov, F.N., Pepper, A.E., Yu, J., Buriev, Z.T., Shermatov, S.E., Saha, S., Ulloa, M., Jenkins, J.N., Abdukarimov, A., Abdurakhmonov, I.Y. 2016. Development, genetic mapping and QTL association of cotton PHYA, PHYB, and HY5-specific CAPS and dCAPS markers. BioMed Central (BMC) Genetics. 17:141.
Recent developments and applications of cotton genomic resources for fiber improvement -
Yu, J. 2016. Recent developments and applications of cotton genomic resources for fiber improvement. World Cotton Research Conference Proceedings, May 2-6, 2016, Goiania, Goias, Brazil. p. 67.
Fine mapping and candidate gene analysis of the dominant glandless gene Gl^e2 in cotton (Gossypium spp.) -
Cheng, H., Lu, C., Yu, J., Zou, C., Zhang, Y., Wang, Q., Huang, J., Feng, X., Jiang, P., Yang, W., Song, G. 2016. Fine mapping and candidate gene analysis of the dominant glandless gene Gl^e2 in cotton (Gossypium spp.). Theoretical and Applied Genetics. 129:1347-1355.
Unlocking the genetic potential of Upland cotton: Insights into TM-1 genome and its sub-genomes -
Yu, J. 2016. Unlocking the genetic potential of Upland cotton: Insights into TM-1 genome and its sub-genomes. In: Proceedings of the National Cotton Council Beltwide Cotton Conference, January 5-7, 2016, New Orleans, Louisiana. p. 595.
RNA Interference for Functional Genomics and Improvement of Cotton (Gossypium species) Reprint Icon -
Abdurakhmonov, I.Y., Ayubov, M., Ubaydullaeva, K.A., Buriev, B.T., Shermatov, S.E., Ruziboev, H., Shapulatov, U.M., Saha, S., Ulloa, M., Yu, J., Percy, R.G., Devor, E.J., Govind, S.C., Sripathi, V.R., Kumpatla, S.P., Van De Kroll, A., Hake, K.D., Khamidov, K., Salikhov, S.I., Jenkins, J.N., Abdukarimov, A., Pepper, A.E. 2016. RNA Interference for Functional Genomics and Improvement of Cotton (Gossypium species). Frontiers in Plant Science. 7:202.
Genetic diversity of the two commercial tetraploid cotton species in the Gossypium Diversity Reference Set -
Hinze, L.L., Gazave, E., Gore, M.A., Fang, D.D., Scheffler, B.E., Yu, J., Jones, D.C., Frelichowski, J.E., Percy, R.G. 2016. Genetic diversity of the two commercial tetraploid cotton species in the Gossypium Diversity Reference Set. Journal of Heredity. 107(3):274-286.
TAL effector-mediated susceptibility to bacterial blight of cotton -
Comparative analysis of genome-wide divergence, domestication footprints and genome-wide association study of root traits for Gossypium hirsutum and Gossypium barbadense -
Sequence composition of BAC clones and SSR markers mapped to Upland cotton chromosomes 11 and 21 targeting resistance to soil-borne pathogens -
Wang, C., Ulloa, M., Shi, X., Yuan, X., Saski, C., Yu, J., Roberts, P. 2015. Sequence composition of BAC clones and SSR markers mapped to Upland cotton chromosomes 11 and 21 targeting resistance to soil-borne pathogens. Frontiers in Plant Science. 6:791.
Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution -
Li, F., Fan, G., Lu, C., Xiao, G., Zou, C., Kohel, R.J., Ma, Z., Shang, H., Ma, X., Wu, J., Liang, X., Huang, G., Percy, R.G., Liu, K., Yang, W., Chen, W., Du, X., Shi, C., Yuan, Y., Ye, W., Liu, X., Zhang, X., Liu, W., Wei, H., Wei, S., Huang, G., Zhang, X., Zhu, S., Zhang, H., Sun, F., Wang, X., Liang, J., Wang, J., He, Q., Huang, L., Wang, J., Cui, J., Song, G., Wang, K., Xu, X., Yu, J., Zhu, Y., Yu, S. 2015. Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution. Nature Biotechnology. 33:524-530.
Distribution and evolution of cotton fiber development genes in the fibreless Gossypium raimondii genome -
Xu, Z., Yu, J., Kohel, R.J., Percy, R.G., Beavis, W.D., Main, D., Yu, J. 2015. Distribution and evolution of cotton fiber development genes in the fibreless Gossypium raimondii genome. Genomics. 106:61-69.
SNP discovery in complex allotetraploid genomes (Gossypium spp., Malvaceae) using genotyping by sequencing -
Logan-Young, C.J., Yu, J., Verma, S.K., Percy, R.G., Pepper, A.E. 2015. SNP discovery in complex allotetraploid genomes (Gossypium spp., Malvaceae) using genotyping by sequencing. Applications in Plant Sciences. 3(3):1400077.
Molecular characterization of the Gossypium diversity reference set of the US National Cotton Germplasm Collection -
Hinze, L.L., Fang, D.D., Gore, M.A., Scheffler, B.E., Yu, J., Frelichowski, J.E., Percy, R.G. 2015. Molecular characterization of the Gossypium diversity reference set of the US National Cotton Germplasm Collection. Theoretical and Applied Genetics. 128(2):313-327.
Mapping genomic loci for cotton plant architecture, yield components, and fiber properties in an interspecific (Gossypium hirsutum L. x G. barbadense L.) RIL population -
Yu, J., Ulloa, M., Hoffman, S.M., Kohel, R.J., Pepper, A.E., Fang, D.D., Percy, R.G., Burke, J.J. 2014. Mapping genomic loci for cotton plant architecture, yield components, and fiber properties in an interspecific (Gossypium hirsutum L. x G. barbadense L.) RIL population. Molecular Genetics and Genomics. 289:1347-1367.
Genomic landscape of fiber genes in fibered and non-fibered cottons -
Genomic exploitation of genetic variation for crop improvement -
Genome sequence of the cultivated cotton Gossypium arboreum -
Li, F., Fan, G., Wang, K., Sun, F., Yuan, Y., Song, G., Ma, Z., Li, Q., Lu, C., Zou, C., Chen, W., Liang, X., Shang, H., Liu, W., Xiao, G., Gou, C., Ye, W., Xu, X., Zhang, X., Wei, H., Li, Z., Zhang, G., Wang, J., Liu, K., Kohel, R.J., Percy, R.G., Yu, J., Zhu, Y., Wang, J., Yu, S. 2014. Genome sequence of the cultivated cotton Gossypium arboreum. Nature Genetics. 46(6):567-574.
The U.S. National Cotton Germplasm Collection – its Contents, Preservation, Characterization, and Evaluation -
Percy, R.G., Frelichowski, J.E., Arnold, M., Campbell, B.T., Dever, J., Fang, D.D., Hinze, L.L., Main, D., Scheffler, J.A., Sheehan, M., Ulloa, M., Yu, J., Yu, J. 2014. The U.S. National Cotton Germplasm Collection – its Contents, Preservation, Characterization, and Evaluation. In: Abdurakhmonov, I. Editor. World Cotton Germplasm Resources. Rijeka, Croatia: InTech. 167-201. Available: http://www.intechopen.com/books/world-cotton-germplasm-resources/the-u-s-national-cotton-germplasm-collection-its-contents-preservation-characterization-and-evaluation.
Toward cotton molecular breeding: challenges and opportunities -
BAC-pool sequencing and analysis of large segments of A12 and D12 homoeologous chromosomes in Upland cotton -
Buyyarapu, R., Kantety, R.V., Yu, J., Xu, Z., Kohel, R.J., Percy, R.G., Macmil, S., Wiley, G.B., Roe, B.A., Sharma, G.C. 2013. BAC-pool sequencing and analysis of large segments of A12 and D12 homoeologous chromosomes in Upland cotton. PLoS One. 8(10): e76757. doi:10.1371/journal.pone.0076757.
Molecular diversity among G. hirsutum accessions in the Gossypium Diversity Reference Set -
Development of Single Nucleotide Polymorphism Markers via Sequence-based Genotyping in Cotton (Gossypium spp) -
A comparison of candidate gene-based and genotyping-by-sequencing (GBS) approaches to trait mapping in Gossypium barbadense L -
De novo SNP discovery and development of an interspecific cotton genome map using a simplified genotyping-by-sequencing (GBS) approach -
Localization of Allotetraploid Gossypium SNPs Using Physical Mapping Resources -
Addition of four-hundred fifty-five microsatellite marker loci to the high density Gossypium hirsutum TM-1 x G. barbadense 3-79 genetic map -
Fang, D.D., Yu, J. 2012. Addition of four-hundred fifty-five microsatellite marker loci to the high density Gossypium hirsutum TM-1 x G. barbadense 3-79 genetic map. Journal of Cotton Science. 16:229-248.
The draft genome of a diploid cotton Gossypium raimondii -
Wang, K., Wang, Z., Li, F., Ye, W., Wang, J., Song, G., Yue, Z., Cong, L., Shang, H., Zhu, S., Zou, C., Li, Q., Yuan, Y., Lu, C., Wei, H., Gou, C., Zheng, Z., Yin, Y., Zhang, X., Liu, K., Wang, B., Song, C., Shi, N., Kohel, R.J., Percy, R.G., Yu, J., Zhu, Y., Wang, J., Yu, S. 2012. The draft genome of a diploid cotton Gossypium raimondii. Nature Genetics. 44(10:1098-1103.
QTL analysis for transgressive resistance to root-knot nematode in interspecific cotton (Gossypium spp.) progeny derived from susceptible parents -
Wang, C., Ulloa, M., Mullens, T.R., Yu, J.Z., Roberts, P.A. 2012. QTL analysis for transgressive resistance to root-knot nematode in interspecific cotton (Gossypium spp.) progeny derived from susceptible parents. PLoS One 7(4):e34874. doi:10.1371/journal.pone.oo34874
Development of a core set of SSR markers for the characterization of Gossypium germplasm -
Yu, J., Fang, D.D., Kohel, R.J., Ulloa, M., Hinze, L.L., Percy, R.G., Zhang, J., Chee, P., Scheffler, B.E., Jones, D.C. 2012. Development of a core set of SSR markers for the characterization of Gossypium germplasm. Euphytica. 187(2):203-213.
Genetic diversity in the U.S. Cotton Germplasm Collection as revealed by SSR markers -
Genome-Wide Gossypium SNP development and validation -
Collaborative development of SNPs for cotton research, introgression, MAS and breeding -
Molecular tools for contemporary cotton breeding -
Yu, J., Fang, D.D., Abdurakhmonov, I.Y., Yu, S., Percy, R.G. 2012. Molecular tools for contemporary cotton breeding [abstract]. Proceedings of the Plant and Animal Genome Conference XX, January 14-18, 2012, San Diego, California. W543.
Genome-wide SNP development and validation for allotetraploid Gossypium -
Hulse, A.M., Wang, F., Hoegenauer, K.A., Stelly, D.M., Ashrafi, H., Van Deynze, A., Yu, J., Chen, Z., Udall, J., Jones, D.C. 2012. Genome-wide SNP development and validation for allotetraploid Gossypium [abstract]. Proceedings of the Plant and Animal Genome Conference XX, January 14-18, 2012, San Diego, California. P0199.
Development of new candidate gene and EST-based molecular markers for Gossypium species -
Buyyarapu, R., Kantety, R.V., Yu, J., Saha, S., Sharma, G.C. 2011. Development of new candidate gene and EST-based molecular markers for Gossypium species. International Journal of Plant Genomics. 2011:Article 894598.
A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome -
Yu, J., Kohel, R.J., Fang, D.D., Cho, J., Van Deynze, A., Ulloa, M., Hoffman, S.M., Pepper, A.E., Stelly, D.M., Jenkins, J.N., Saha, S., Kumpatla, S.P., Shah, M.R., Hugie, W.V., Percy, R.G. 2012. A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome. Genes, Genomes, Genetics. 2:43-58.
Genetic diversity in Gossypium genus -
Abdurakhmonov, I.K., Buriev, Z.T., Shermatov, S.E., Abdullaev, A.A., Urmonov, K., Kushanov, F., Egamberdiev, S.S., Shapulatov, U., Abdukarimov, A., Saha, S., Jenkins, J.N., Kohel, R.J., Yu, J., Pepper, A.E., Kumpatala, S., Ulloa, M. 2012. Genetic diversity in Gossypium genus. In: Caliskan, M., editor. Genetic Diversity in Plants. InTech. p. 313-338.
Preliminary assessment of the efficiency of a core marker set in revealing genetic diversity in the U.S. germplasm collection -
Percy, R.G., Fang, D.D., Hinze, L.L., Yu, J., Frelichowski, J.E., Scheffler, B.E., Gore, M.A. 2011. Preliminary assessment of the efficiency of a core marker set in revealing genetic diversity in the U.S. germplasm collection. In: Proceedings of the National Cotton Council Beltwide Cotton Conference, January 4-7, 2011, Atlanta, Georgia. 2011 CDROM.
Development of gene-tagged SNP markers for gland morphogenesis in cotton -
Use of diversity arrays technology markers for integration into a cotton reference map and anchoring to a recombinant inbred line map -
Reddy, U.K., Rong, J., Heller-Uszynska, K., Nimmakayala, P., Vajja, G., Rahman, M.A., Yu, J., Soliman, K.M., Kilian, A., Paterson, A.H. 2011. Use of diversity arrays technology markers for integration into a cotton reference map and anchoring to a recombinant inbred line map. Genome. 54:349-359.
Polyploidization altered gene functions in cotton (Gossypium spp.) -
Xu, Z., Yu, J., Cho, J., Yu, J., Kohel, R.J., Percy, R.G. 2010. Polyploidization altered gene functions in cotton (Gossypium spp.). PLoS One. 5(12):e14351. doi:10.1371/journal.pone.0014351.
Development and mapping of gene-tagged SNP markers for gland morphogenesis in cotton -
Cho, J., Lu, C., Kohel, R.J., Yu, J. 2011. Development and mapping of gene-tagged SNP markers for gland morphogenesis in cotton. Journal of Cotton Science. 15:22-32.
Distribution of fiber development genes and transcription factors between At and Dt subgenomes in tetraploid cotton -
The construction of a tetraploid cotton genome-wide comprehensive reference map and the comparison with cotton physical mapping information -
Development of core SSR markers for Gossypium germplasm characterization -
Yu, J., Fang, D.D., Ulloa, M., Percy, R.G., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Cho, J., Campbell, B.T., Chee, P., Zhang, J., Abdurakhmonov, I., Abdukarimov, A., Jones, D.C. 2010. Development of core SSR markers for Gossypium germplasm characterization [abstract]. In: Proceedings of the National Cotton Council Beltwide Cotton Conferences, January 4-7, 2010, New Orleans, Louisiana. p. 811. CDROM.
Portable DNA markers tailored for systematic characterization of Gossypium germplasm -
Yu, J., Fang, D.D., Ulloa, M., Percy, R.G., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Cho, J., Campbell, B.T., Chee, P., Abdurakhmonov, I., Abdukarimov, A., Jones, D.C. 2010. Portable DNA markers tailored for systematic characterization of Gossypium germplasm [abstract]. In: Plant and Animal Genome Conference Proceedings, January 9-13, 2010, San Diego, California. P149.
Sampling nucleotide diversity in cotton -
Van Deynze, A., Stoffel, K., Lee, M., Wilkins, T.A., Kozik, A., Cantrell, R.G., Yu, J., Kohel, R.J., Stelly, D.M. 2009. Sampling nucleotide diversity in cotton. BMC Plant Biology. 9:Article 125.
New DNA Markers for the Use in Cotton (Gossypium spp.) Improvement -
Xiao, J., Wu, K., Fang, D.D., Stelley, D.M., Yu, J., Cantrell, R.G. 2009. New DNA Markers for the Use in Cotton (Gossypium spp.) Improvement. Journal of Cotton Science. 13(2):75-157
BAC-pool 454-sequencing: A rapid and efficient approach to sequence complex tetraploid cotton genomes -
Buyyarapu, R., Kantety, R., Xu, Z., Yu, J., Kohel, R.J., Percy, J.T., Macmil, S., Wiley, G., Roe, B., Sharma, G. 2009. BAC-pool 454-sequencing: A rapid and efficient approach to sequence complex tetraploid cotton genomes [abstract]. In: Proceedings of the Plant and Animal Genome Conference, January 10-14, 2009, San Diego, California. 2009 CDROM.
CottonDB: A resource for cotton genome research -
Yu, J., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Xu, Z., Yu, J., Percy, R.G. 2009. CottonDB: A resource for cotton genome research [abstract]. In: Proceedings of the Plant and Animal Genome Conference, January 10-14, 2009, San Diego, California. 2009 CDROM.
Distribution and organization of gene-rich islands for fiber development in the cotton genome -
Xu, Z., Kohel, R.J., Song, G., Cho, J., Alabady, M., Yu, J., Koo, P., Chu, J., Yu, S., Wilkins, T.A., Zhu, Y., Yu, J. 2009. Distribution and organization of gene-rich islands for fiber development in the cotton genome [abstract]. In: Proceedings of the Plant and Animal Genome Conference, January 10-14, 2009, San Diego, California. 2009 CDROM.
Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm -
Abdurakhmonov, I.Y., Saha, S., Jenkins, J.N., Buriev, Z.T., Shermatov, S.E., Scheffler, B.E., Pepper, A.E., Yu, J., Kohel, R.J., Abdukarimov, A. 2009. Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm. Genetica. 136:401-417.
CottonDB: A database for cotton research -
Yu, J., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Xu, Z., Yu, J., Percy, R.G. 2009. CottonDB: A database for cotton research [abstract]. Proceedings of the Beltwide Cotton Conferences, January 5-8, 2009, San Antonio, TX. 2009 CDROM.
Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm -
Abdurakhmonov, I.Y., Kohel, R.J., Yu, J., Pepper, A.E., Abdullaev, A.A., Kushanov, F.N., Salakhutdinov, I.B., Buriev, Z.T., Saha, S., Scheffler, B.E., Jenkins, J.N., Abdukarimov, A. 2008. Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm. Genomics. 92:478-487.
Perspectives of the International Cotton Genome Initiative -
Yu, J., Percy, R.G. 2008. Perspectives of the International Cotton Genome Initiative [abstract]. In: Proceedings of the International Cotton Genome Initiative Workshop, July 8-11, 2008, Anyang, China. p. 2.
Sequencing of the cultivated tetraploid cotton genome - Gossypium hirsutum -
Yu, S., Wang, K., Li, F., Kohel, R.J., Percy, R.G., Yu, J. 2008. Sequencing of the cultivated tetraploid cotton genome - Gossypium hirsutum [abstract]. In: Proceedings of the International Cotton Genome Initiative Workshop, July 8-11, 2008, Anyang, China. p. 4.
CottonDB enhancement -
Yu, J., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Xu, Z., Yu, J., Percy, R.G. 2008. CottonDB enhancement [abstract]. In: Proceedings of the International Cotton Genome Initiative Workshop, July 8-11, 2008, Anyang, China. p. 120.
An integrated genetic, physical, and transcript map of homoeologous chromosomes 12 and 26 in Upland cotton (Gossypium hirsutum L.) -
Xu, Z., Kohel, R.J., Song, G., Cho, J., Yu, J., Yu, S., Tomkins, J., Yu, J. 2008. An integrated genetic, physical, and transcript map of homoeologous chromosomes 12 and 26 in Upland cotton (Gossypium hirsutum L.) [abstract]. In: Proceedings of the International Cotton Genome Initiative Workshop, July 8-11, 2008, Anyang, China. p. 22.
Gene-rich islands for fiber development in the cotton genome -
Xu, Z., Kohel, R.J., Song, G., Cho, J., Alabady, M., Yu, J., Poo, K., Chu, J., Yu, S., Wilkins, T.A., Zhu, Y., Yu, J. 2008. Gene-rich islands for fiber development in the cotton genome. Genomics. 92:173-183.
An integrated genetic and physical map of homoeologous chromosomes 12 and 26 in Upland cotton (G. hirsutum L.) -
Xu, Z., Kohel, R.J., Song, G., Cho, J., Yu, J., Yu, S., Tomkins, J., Yu, J. 2008. An integrated genetic and physical map of homoeologous chromosomes 12 and 26 in Upland cotton (G. hirsutum L.). BMC Genomics. 9:108.
Cotton (Gossypium spp.) R2R3-MYB transcription factors SNP identification, phylo-genomic characterization, chromosome localization and linkage mapping -
An, C., Saha, S., Jenkins, J.N., Ma, D., Scheffler, B.E., Kohel, R.J., Yu, J., Stelly, D.M. 2008. Cotton (Gossypium spp.) R2R3-MYB transcription factors SNP identification, phylogenomic characterization, chromosome localization and linkage mapping. Theoretical and Applied Genetics. 161:1015-1026.
Assembly and sorting of homologous BAC contigs in allotetraploid cotton genomes -
Yu, J., Xu, Z., Kohel, R.J. 2008. Assembly and sorting of homologous BAC contigs in allotetraploid cotton genomes [abstract]. In: Proceedings of the Beltwide Cotton Conferences, January 8-11, 2008, Nashville, Tennessee. 2008 CDROM.
Insights from the International Cotton Genome Initiative -
Yu, J., Percy, R.G., Brubaker, C.L., Kohel, R.J., Stelly, D.M., Cantrell, R.G. 2008. Insights from the International Cotton Genome Initiative [abstract]. In: Proceedings of Plant and Animal Genome XVI Conference, January 12-16, 2008, San Diego, California. Paper No. W327.
The utility of a 384 Illumina Bead array in cotton -
Van Deynze, A., Lund, J., Yu, J., Kohel, R.J., Yang, S.S., Stelly, D.M. 2008. The utility of a 384 illumina bead array in cotton [abstract]. In: Proceedings of Plant and Animal Genome XVI Conference, January 12-16, 2008, San Diego, California. Paper No. W252.
Separation of homologous BAC contigs in the tetraploid Upland cotton -
Xu, Z., Kohel, R.J., Song, G., Cho, J., Yu, J., Dong, J., Tomkins, J., Yu, J. 2008. Separation of homologous BAC contigs in the tetraploid Upland cotton [abstract]. In: Proceedings of Plant and Animal Genome XVI Conference, January 12-16, 2008, San Diego, California. Paper No. P212.
BAC-DERIVED SSR CHROMOSOME LOCATIONS IN COTTON -
Guo, Y., Saha, S., Yu, J., Jenkins, J.N., Kohel, R.J., Scheffler, B.E., Stelly, D.M. 2008. BAC-derived SSR chromosome locations in cotton. Euphytica. 161:361-370.
Lessons Learned and Challenges Ahead for Cotton Genome Mapping. Reprint Icon -
Ulloa, M., Saha, S., Yu, J., Jenkins, J.N., Meredith Jr, W.R., Kohel, R.J. 2008. Lessons Learned and Challenges Ahead for Cotton Genome Mapping. World Cotton Res. Conf. (Proc) paper no. 1798.
CottonDB: Cotton Genome Database -
Yu, J., Hinze, L.L., Frelichowski, J.E., Xu, Z., Yu, J., Kohel, R.J. 2008. CottonDB: Cotton Genome Database [abstract]. In: Proceedings of Plant and Animal Genome Conference XVI, January 12-16, 2007, San Diego, California. Paper No. W253.
CottonDB Enhancement -
The International Cotton Genome Initiative: Opportunities and Challenges -
Lessons Learned and Challenges Ahead of the Cotton Genome Mapping. Reprint Icon -
Ulloa, M., Saha, S., Yu, J. 2007. Lessons Learned and Challenges Ahead of the Cotton Genome Mapping. Refereed Proc. World Cotton Res. Conf. Lubbock, TX CDROM paper no. 1853.
Towards Sequencing Cotton (Gossypium) Genomes -
Chen, Z., Scheffler, B.E., Dennis, E., Triplett, B.A., Zhang, T., Chen, X., Stelly, D., Rabinowicz, P., Town, C., Arioli, T., Brubaker, C., Cantrell, R., Lacape, J., Ulloa, M., Chee, P., Gingle, A.R., Haigler, C.H., Percy, R.G., Saha, S., Wilkins, T., Wright, R.I., Van Deynze, A., Zhu, Y., Yu, S., Guo, W., Abdurakhmonov, I., Katageri, I., Ur-Rahman, M., Zafar, Y., Yu, J., Kohel, R.J., Wendel, J., Paterson, A. 2007. Towards Sequencing Cotton (Gossypium) Genomes. Plant Physiology. 145:1303-1310.
Indentification of 700 new microsatellite loci from cotton (G. hirsutum) -
Hoffman, S.M., Yu, J., Grum, D.S., Xiao, J., Kohel, R.J., Pepper, A.E. 2007. Indentification of 700 new microsatellite loci from cotton (G. hirsutum). Journal of Cotton Science. 11:208-241.
MICROSATELLITE MARKERS ASSOCIATED WITH COTTON FIBER DEVELOPMENT -
Abdurakhmonov, I.Y., Buriev, Z.T., Saha, S., Pepper, A.E., Musaev, J.A., Almatov, A., Shermatov, S.E., Kushanov, F.N., Mavlonov, G.T., Reddy, U.K., Yu, J., Jenkins, J.N., Kohel, R.J., Abdukarimov, A. 2007. Microsatellite markers associated with lint percentage trait in cotton, Gossypium hirsutum. Euphytica. 156:141-156.
Development of Gene-based Markers and their Chromosomal Localization in Cotton (Gossypium sp.) -
Buyyarapu, R., Kantety, R., Saha, S., Yu, J., Soliman, K., Sharma, G. 2007. Development of gene-based markers and their chromosomal localization in cotton (Gossypium sp.). Plant and Animal Genome Conference. p. 118.
The R2R3-Myb transcription fators of cotton: SNP characterization, chromosomal assignment, and phylogenetic analysis -
An, C., Saha, S., Jenkins, J.N., Scheffler, B.E., Ma, D-P., Stelly, D.M. 2007. MYB genes, a family of transcription fators: SNPS characterization, chromosomal location, and phylogenetic analysis [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1620.
An integrated BAC/BIBAC-based physical and genetic map of the cotton genome -
Xu, Z., Yu, J., Cho, J., Coveleda, L., Dong, J., Song, G., Zhang, L., Atkins, M., Yu, J., Ding, K., Ulloa, M., Tomkins, J., Stelly, D.M., Zhang, H., Kohel, R.J. 2007. An integrated BAC/BIBAC-based physical and genetic map of the cotton genome [abstract]. In: Proceedings of Plant and Animal Genome XV Conference, January 13-17, 2007, San Diego, California. Paper No. W198.
Developement of gene and EST-based markers and their chromosomal localization in cotton -
Buyyarapu, R., Kantety, R., Saha, S., Yu, J., Soliman, K., Sharma, G. 2007. Developement of gene and EST-based markers and their chromosomal localization in cotton [abstract]. In: Proceedings of Plant and Animal Genome XV Conference, January 13-17, 2007, San Diego, California. Paper No. P118.
Genome-wide linkage disequilibruim revealed by microsatellite markers and association study of fiber quality traits in cotton -
Abdurakhmonov, I.Y., Kohel, R.J., Saha, S., Pepper, A.E., Yu, J., Buriev, Z.T., Abdullaev, A., Shermatov, S., Jenkins, J.N., Scheffler, B.E., Abdukarimov, A. 2007. Genome-wide linkage disequilibruim revealed by microsatellite markers and association study of fiber quality traits in cotton [abstract]. In: Proceedings of Plant and Animal Genome XV Conference, January 13-17, 2007, San Diego, California. Paper No. W199.
Analysis of fiber quality traits in a seven-parent upland cotton diallel -
Hinze, L.L., Yu, J., Kohel, R.J. 2007. Analysis of fiber quality traits in a seven-parent upland cotton diallel [abstract]. In: Proceedings of Beltwide Cotton Conferences, January 9-12, 2007, New Orleans, Louisiana. Paper No. 6497.
Linkage Disequilibrium Based Association Mapping of Fiber Quality Traits in Cotton Using Diverse Cotton Germplasm from Uzbekistan -
Abdurakhomonov, I.Y., Kohel, R.J., Saha, S., Pepper, A.E., Yu, J., Buriev, Z.T., Shermatov, S.E., Abdullaev, A.A., Kushanov, F.N., Jenkins, J.N., Scheffler, B.E., Abdukarimov, A. 2006. Linkage disequilibrium based association mapping of fiber quality traits in cotton using diverse cotton germplasm from Uzbekistan [abstract]. In: Proceedings of International Cotton Genome Initiative Workshop, Structural Genomics Session, September 18-20, 2006, Brasilia, Brazil. Paper No. 7. Available: http://icgi.tamu.edu/pdf/icgi06_abs_final.pdf.
Cottonseed -
Kohel, R.J., Yu, J. 2006. Cottonseed. In: Singh, R.J., editor. Genetic Resources, Chromosome Engineering, and Crop Improvement, Vol. 4, Oilseed Crops. New York, NY: CRC Press. p. 89-102.
COTTONDB.ORG - NEW WEBSITE FOR COTTON GENOME DATABASE -
Yu, J., Hinze, L.L., Yu, J., Kohel, R.J. 2006. CottonDB.org - New website for cotton genome database [abstract]. In: Proceedings of International Cotton Genome Initiative Workshop, Evolutionary and Comparative Genomics and Bioinformatics Session, September 18-20, 2006, Brasilia, Brazil. Paper No. 4. Available: http://icgi.tamu.edu/pdf/icgi06_abs_final.pdf.
CMD: A Cotton Microsatellite Database Resource for Gossypium Genomics -
Blenda, A.V., Scheffler, J.A., Scheffler, B.E., Palmer, M., Lacape, J., Yu, J., Jesudraui, C., Jung, S., Muthukumar, S., Yellambalase, P., Ficklin, S., Staton, M., Eschelman, R., Ulloa, M., Saha, S., Burr, B., Lui, S., Zhang, T., Fang, D., Pepper, A.E., Kumpatla, S.P., Jacobs, J., Tomkins, J.P., Cantrell, R.G., Main, D. 2006. CMD: A Cotton Microsatellite Database Resource for Gossypium Genomics. Biomed Central (BMC) Genomics. 7:132.
COMPLETE ASSIGNMENT OF THE G. HIRSUTUM L. CHOMOSOMES BY BAC-FISH AND TRANSLOCATION ANALYSES -
Wang, K., Song, X., Han, Z., Guo, W., Yu, J., Sun, J., Pan, J., Kohel, R.J., Zhang, T. 2006. Complete assignment of the G. hirsutum L. chromosomes by BAC-FISH and translocation analyses. Journal of Theoretical and Applied Genetics. 113:73-80.
ASSOCIATION ANALYSIS OF MORPHOLOGICAL CHARACTERS WITH MOLECULAR MARKERS IN A TM-1 X 3-79 RI POPULATION GROWN IN THREE DIVERSE ENVIRONMENTS -
Hoffman, S., Kohel, R.J., Ulloa, M., Cho, J., Xu, Z., Smith, W., Pepper, A., Cantrell, R., Yu, J. 2006. Association analysis of morphological characters with molecular markers in a TM-1 x 3-79 RIL population grown in three diverse environments [abstract]. In: Proceedings of the Beltwide Cotton Conferences, January 3-6, 2006, San Antonio, Texas. 2006 CDROM.
DEVELOPMENT OF PCR-BASED MARKERS FROM FIBER ESTS AND BAC-END SEQUENCES FOR THE CONSTRUCTION OF A CONSENSUS COTTON GENETIC MAP. -
Ulloa, M., Frelichowski, J.E., Palmer, M., Park, Y.h., Alabady, M.S., Wilkins, T.A., Yu, J., Kohel, R., Cantrell, R., Main, D., Tomkins, J.P., Stelly, D., VanDeynze, A. 2006. Development of PCR-based markers from fiber ESTs and BAC-end sequences for the construction of a consensus cotton genetic map. Plant and Animal Genome XIV Conference Proceedings. p. 42.
CHARACTERIZATION OF 656 NEW SSR MARKERS DEVELOPED FROM GOSSYPIUM HIRSUTUM SEQUENCES -
Hoffman, S., Yu, J., Kohel, R.J., Cantrell, R.G., Xiao, J., Pepper, A. 2006. Characterization of 656 new SSR markers developed from Gossypium hirsutum sequences [abstract]. Proceedings of Plant and Animal Genome XIV Conference. Paper No. P157.
DISTRIBUTION OF FIBER ELONGATION GENES IN THE UPLAND COTTON GENOME -
Xu, Z., Song, G., Cho, J., Jianmin, D., Koo, P., Kohel, R.J., Yu, J. 2006. Distribution of fiber elongation genes in the upland cotton genome [abstract]. Proceedings of Plant and Animal Genome XIV Conference. Paper No. P684.
Cotton Marker Database -
Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends. -
Frelichowski, J.E., Palmer, M.B., Main, D., Tomkins, J.P., Cantrell, R.G., Stelly, D.M., Yu, J., Kohel, R.J., Ulloa, M. 2006. Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends. Mol. Genet. Genom. 275:479-491.
WIDE-CROSS WHOLE-GENOME RADIATION HYBIRD MAPPING OF THE COTTON (GOSSYPIUM BARBADENSE L.) GENOME -
Gao, W., Chen, Z.J., Yu, J., Kohel, R.J., Womack, J.E., Stelly, D.M. 2005. Wide-cross whole-genome radiation hybrid mapping of the cotton (Gossypium barbadense L.) genome. Molecular Genetics and Genomics. 275:105-113.
CHARACTERIZAION OF G. HIRSUTUM WILD AND VARIETY ACCESSIONS FROM UZBEK COTTON GERMPLASM COLLECTION FOR MORPHOLOGICAL AND FIBER QUALITY TRAITS AND DATABASE DEVELOPEMENT -
Abdurakhmonov, I.Y., Buriev, Z.T., Kohel, R.J., Yu, J., Pepper, A.E., Rizaeva, S.M., Abdukarimov, A., Saha, S., Jenkins, J.N. 2006. Characterizaion of G. hirsutum wild and variety accessions from Uzbek cotton germplasm collection for morphological and fiber quality traits and database developement. In: Proceedings of the Beltwide Cotton Conferences, January 3-6, 2006, San Antonio, Texas. 2006 CDROM.
MOLECULAR GENETIC DIVERSITY OF G. HIRSUTUM COTTON ACCESSION FROM UZBEK COTTON GERMPLASM REVEALED BY A CORE SET AND CHROMOSOME SPECIFIC MICROSATELLITE MARKERS -
Abdurakhmonov, I.Y., Kohel, R.J., Saha, S., Pepper, A.E., Yu, J., Buriev, T.Z., Shermatov, S., Abdullaev, A., Jenkins, J.N., Abdukarimov, A. 2006. Molecular genetic diversity of G. hirsutum cotton accession from Uzbek cotton germplasm revealed by a core set and chromosome specific microsatellite markers [abstract]. Proceedings of Plant and Animal Genome XIV Conference. Paper No. P131.
DIALLEL ANALYSIS OF FIBER QUALITY TRAITS IN UPLAND COTTON -
Hinze, L.L., Kohel, R.J., Yu, J. 2005. Diallel analysis of fiber quality traits in upland cotton [abstract]. American Society of Agronomy. Paper No. 8687.
GENETIC MAPPING OF NEW COTTON FIBER LOCI USING EST-DERIVED MICROSATELLITES IN AN INTERSPECIFIC RECOMBINANT INBRED LINE COTTON POPULATION. -
Park, Y.H., Alabady, M.S., Ulloa, M., Sickler, B., Wilkins, T.A., Yu, J., Stelly, D.M., Kohel, R.J., El-Shihy, O.M., Cantrell, R.G. 2005. Genetic mapping of new cotton fiber loci using EST-derived microsatellites in an interspecific recombinant inbred line cotton population. Mol. Genet.Genom. 274:428-441.
THE INTERNATIONAL COTTON GENOME INITIATIVE WORKSHOP 1, AT PAG XIII -
Kohel, R.J., Yu, J. 2005. The international cotton genome initiative workshop 1, at PAG XIII. Comparative and Functional Genomics. 6:170-173.
CHROMOSOMAL ASSIGNMENT OF BAC-DERIVED SSR MARKERS IN COTTON (GOSSYPIUM HIRSUTUM L.) -
Guo, Y., Saha, S., Yu, J., Jenkins, J.N., Kohel, R.J., Stelly, D.M. 2005. Chromosomal assignment of bac-derived SSR markers in cotton (Gossypium hirsutum L.) [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1067.
A SYNTENIC STUDY BETWEEN COTTON AND ARABIDOPSIS USING INTEGRATED PHYSICAL MAPS AND CONSERVED ORTHOLOG MARKERS -
Xu, Z., Kohel, R.J., Dong, J., Zhang, H., Stelly, D.M., Covaleda, L., Koo, P., Yu, J. 2005. A syntenic study between cotton and Arabidopsis using integrated physical maps and conserved ortholog markers [abstract]. Plant and Animal Genome XIII Conference. p. 135.
PHYSICAL MAPPING OF FIBER DEVELOPMENT GENES IN COTTON -
Yu, J., Kohel, R.J., Xu, Z., Dong, J., Zhang, H., Stelly, D.M., Zhu, Y., Covaleda, L. 2005. Physical mapping of fiber development genes in cotton [abstract]. Plant and Animal Genome XIII Conference. p. 225.
SSR GENOTYPING OF 191 RECOMBINANT INBRED COTTON LINES THAT WERE DERIVED FROM THE TM-1 X 3-79 CROSS -
Kohel, R.J., Yu, J. 2004. SSR genotyping of 191 recombinant inbred cotton lines that were derived from the TM-1 x 3-79 cross [abstract]. American Society of Agronomy. 2004 CDROM.
INTEGRATIVE PHYSICAL MAPPING OF THE COTTON GENOME AND ITS SYNTENY WITH ARABIDOPSIS -
Yu, J., Kohel, R.J., Zhang, H.B., Xu, Z., Dong, J., Lee, M., Cui, P., Covaleda, L. 2004. Integrative physical mapping of the cotton genome and its synteny with Arabidopsis [abstract]. American Society of Agronomy. 2004 CDROM.
INTEGRATED GENETIC, PHYSICAL, AND COMPARATIVE MAPPING OF THE COTTON GENOME -
Yu, J., Kohel, R.J., Xu, Z., Dong, J., Cui, P., Hoffman, S.M., Zhang, H., Stelly, D.M., Pepper, A.E. 2005. Integrated genetic, physical, and comparative mapping of the cotton genome [abstract]. In: Proceedings of the Beltwide Cotton Conferences, January 4-7, 2005, New Orleans, Louisiana. 2005 CDROM.
A COMPARISON OF GENOME MAPPING TOOLS IN PLANTS -
Todd, S.M., Pepper, A.E., Ford, J., Stelly, D.M., Hoffman, S.M., Yu, J., Gao, W. 2005. A comparison of genome mapping tools in plants [abstract]. In: Proceedings of the Beltwide Cotton Conferences, January 4-7, 2005, New Orleans, Louisiana. 2005 CDROM.
MOLECULAR MARKERS RUN ON A TEST PANEL: A DATA SOURCE FOR THE COTTON COMMUNITY -
Scheffler, B.E., Taliercio, E.W., Scheffler, J.A., Yu, J. 2004. Molecular markers run on a test panel: a data source for the cotton community. International Cotton Genome Initiative Workshop.
MOLECULAR MAPPING OF QTLS FOR FIBER QUALITIES IN THREE DIVERSE LINES OF UPLAND COTTON USING SSR MARKERS -
Shen, X., Guo, W., Zhu, X., Yu, J., Kohel, R.J., Zhang, T. 2005. Molecular mapping of QTLs for fiber qualities in three diverse lines of upland cotton using SSR markers. Molecular Breeding. 15:169-181.
PERMANENT RECOMBINANT INBRED MAPPING POPULATION FOR COTTON GENOME RESEARCH -
Kohel, R.J., Yu, J. 2004. Permanent recombinant inbred mapping population for cotton genome research [abstract]. International Cotton Genome Initiative Workshop. p. 44.
WIDE-CROSS WHOLE-GENOME RADIATION HYBRID (WWRH) RESOURCES FOR COTTON GENOMICS -
Stelly, D.M., Gao, W., Todd, S.Z., Chen, J., Yu, J. 2004. Wide-cross whole-genome radiation hybrid (WWRH) resources for cotton genomics [abstract]. International Cotton Genome Initiative Workshop. p. 25.
MOLECULAR MAPPING OF QTLS FOR FIBER QUALITY IN UPLAND COTTON USING SSR MARKERS -
Zhang, T., Shen, X., Guo, W., Yu, J., Kohel, R.J. 2004. Molecular mapping of QTLs for fiber quality in upland cotton using SSR markers [abstract]. International Cotton Genome Initiative Workshop. p. 33.
MOLECULAR MARKERS RUN ON A TEST PANEL: A DATA SOURCE FOR THE COTTON COMMUNITY -
Scheffler, B.E., Taliercio, E.W., Scheffler, J.A., Yu, J. 2004. Molecular markers run on a test panel: A data source for the cotton community [abstract]. International Cotton Genome Initiative Workshop. Paper No. 18-45.
EVALUATION OF FIBER QUALITY AND OTHER AGRONOMIC TRAITS OF G. HIRSUTUM ACCESSIONS FROM UZBEK COTTON GERMPLASM -
Abdurakhmonov, I., Buriev, Z.T., Kohel, R.J., Yu, J., Pepper, A.E., Saha, S. 2004. Evaluation of fiber quality and other agronomic traits of G. hirsutum accessions from Uzbek cotton germplasm [abstract]. International Cotton Genome Initiative Workshop. p. 88.
GENETIC, PHYSICAL AND QTL MAPPING ASSESSMENTS OF BAC-END DERIVED MICROSATELLITE MARKERS DEVELOPED FROM COTTON (GOSSYPIUM HIRSUTUM L.) ACALA 'MAXXA'. -
Frelichowski, J.E., Ulloa, M., Palmer, M., Main, D., Tomkins, J.P., Stelly, D.M., Kohel, R.J., Yu, J., Cantrell, R.G. 2005. Genetic, physical and QTL mapping assessments of bac-end derived microsatellite markers developed from cotton (gossypium hirsutum l.) acala cv. 'maxxa'. Plant and Animal Genome XIII Conference Proceedings. p. 225.
INTEGRATED PHYSICAL MAPPING OF THE COTTON GENOME -
Yu, J., Kohel, R.J., Zhang, H.B., Xu, Z., Dong, J. 2004. Integrated physical mapping of the cotton genome [abstract]. International Cotton Genome Initiative Workshop. p. 24.
A MINIMAL TILING PATH FOR MAXIMAL GENOME COVERAGE: INTERNATIONAL COLLABORATION ON THE GLOBAL BAC SEQUENCING PLATFORM -
Yu, J. 2004. A minimal tiling path for maximal genome coverage: International collaboration on the global BAC sequencing platform [abstract]. International Cotton Genome Initiative Workshop. p. 24.
SSR GENOTYPING OF 191 RECOMBINANT INBRED COTTON LINES THAT WERE DERIVED FROM THE TM-1 X 3-79 CROSS -
CLONING, CHARACTERIZATION, AND EVALUATION OF THE NBS-LRR-ENCODING RESISTANCE GENE ANALOGUE FAMILY IN POLYPLOID COTTON (GOSSYPIUM HIRSUTUM L.) -
He, L., Du, C., Covaleda, L., Xu, Z., Robinson, A.F., Yu, J., Kohel, R.J., Zhang, H. 2004. Cloning, characterization, and evaluation of the NBS-LRR-encoding resistance gene analogue family in polyploid cotton (Gossypium hirsutum L.). Molecular Plant Microbe Interactions. 17(11):1234-1241.
PERMANENT RECOMBINANT INBRED MAPPING POPULATION FOR COTTON GENOME RESEARCH -
INTEGRATIVE PHYSICAL MAPPING OF THE COTTON GENOME AND ITS SYNTENY WITH ARABIDOPSIS -
Yu, J., Kohel, R.J., Zhang, H.B., Xu, Z., Dong, J., Lee, M., Cui, P., Covaleda, L. 2004. Integrative physical mapping of the cotton genome and its synteny with Arabidopsis [abstract]. American Society of Agronomy. 2004 CDROM.
A STANDARD PANEL OF GOSSYPIUM GENOTYPES ESTABLISHED FOR SYSTEMATIC CHARACTERIZATION OF COTTON MICROSATELLITE MARKERS -
Yu, J. 2004. A standard panel of Gossypium genotypes established for systematic characterization of cotton microsatellite markers. Plant Breeding News. p. 148. Available: http://www.fao.org/waicent/faoinfo/agricult/agp/agpc/doc/services/pbn.html.
CLONING, CHARACTERIZATION, AND EVOLUTION OF THE NBS-LRR-ENCODING RESISTANCE GENE ANALOGUE FAMILY IN POLYPLOID COTTON (GOSSYPIUM HIRSUTUM L.) -
He, L.M., Du, C.G., Covaleda, L., Robinson, A.F., Yu, J., Kohel, R.J., Zhang, H.B. 2004. Cloning, characterization, and evolution of the NBS-LRR-encoding resistance gene analogue family in polyploid cotton (Gossypium hirsutum L.). Molecular Plant-Microbe Interactions. 17(11):1234-1241.
TOWARD AN INTEGRATED PHYSICAL AND GENETIC MAP OF THE CULTIVATED COTTON GENOME: PHYSICAL MAP CONTIG ASSEMBLING AND ANCHORING TO ITS SUBGENOMES -
Xu, Z., Yu, J., Covaleda, L., Dong, J., Lee, M., Ding, K., Kohel, R.J., Zhang, H. 2004. Toward an integrated physical and genetic map of the cultivated cotton genome: Physical map contig assembling and anchoring to its subgenomes [abstract]. Plant and Animal Genome Conference XII. Paper No. P759.
TOWARDS THE INTERNATIONAL COLLABORATION ON COTTON STRUCTURAL GENOMICS -
Yu, J., Zhang, T. 2004. Towards the international collaboration on cotton structural genomics. In: Proceedings of the Beltwide Cotton Conferences, January 6-9, 2004, San Antonio, Texas. 2004 CDROM.
ESTABLISHMENT OF THE STANDARDIZED COTTON MICROSATELLITE DATABASE (CMD) PANEL -
Yu, J., Kohel, R.J., Cantrell, R., Jones, D., Saha, S., Thomkins, J., Main, D., Palmer, M., Pepper, A., Stelly, D., Ulloa, M., Scheffler, J.A. 2004. Establishment of the standardized cotton microsatellite database (cmd) panel. In: Proceedings of the Beltwide Cotton Conferences, January 6-9, 2004, San Antonio, Texas. 2004 CDROM.
TOWARD AN INTEGRATED PHYSICAL AND GENETIC MAP OF THE CULTIVATED ALLOTETRAPLOID COTTON GENOME -
Yu, J., Kohel, R.J., Zhang, H., Stelly, D.M., Xu, Z., Dong, J., Covaleda, L., Lee, M., Cui, P., Lazo, G.R., Gupta, P., Ding, K. 2004. Toward an integrated physical and genetic map of the cultivated allotetraploid cotton genome [abstract]. Plant and Animal Genome Conference XII. Paper No. W147.
WIDE-CROSS WHOLE-GENOME RADIATION HYBRID (WWRH) MAPPING OF COTTON (G. HIRSUTUM L.) -
Gao, W., Chen, J., Yu, J., Raska, D., Kohel, R.J., Womack, J.E., Stelly, D.M. 2003. Wide-cross whole-genome radiation hybrid (WWRH) mapping of cotton (G. hirsutum L.). Genetics. 167:1317-1329.
EXPANDING COTTON'S GENETIC BASE -
YU, J. EXPANDING COTTON'S GENETIC BASE. Cotton Farming. May 2003. p. 10.
INTEGRATIVE PHYSICAL AND GENETIC MAPPING OF THE COTTON GENOME (GOSSYPIUM HIRSUTUM L.) -
YU, J., KOHEL, R.J., ZHANG, H., STELLEY, D.M., DONG, J., XU, Z., COVALEDA, L., ZHANG, L., GAO, W., SUN, S. INTEGRATIVE PHYSICAL AND GENETIC MAPPING OF THE COTTON GENOME (GOSSYPIUM HIRSUTUM L.). PLANT AND ANIMAL GENOME CONFERENCE PROCEEDINGS.
TOWARD AN INTEGRATED PHYSICAL AND GENETIC MAP OF COTTON GEMONE: BAC FINGERPRINTING AND PHYSICAL MAP CONSTRUCTION. -
Xu, Z., Yu, J., Covaleda, L., Lee, M., Dong, J., Ding, K., Kohel, R.J., Zhang, H. 2003. Toward an integrated physical and genetic map of the cotton genome: BAC fingerprinting and physical map construction [abstract]. Plant and Animal Genome XI Conference. Paper No. P689.
RADIATION DOSES FOR WIDE-CROSS WHOLE-GENOME RADIATION HYBRID MAPPING OF THE COTTON (GOSSYPIUM HIRSUTUM L.) GENOME -
Gao, W., Chen, J., Yu, J., Raska, D., Kohel, R.J., Smith, C.W., Womack, J.E., Stelly, D.M. 2003. Radiation doses for wide-cross whole-genome radiation hybrid mapping of the cotton (Gossypium hirsutum L.) genome [abstract]. Plant and Animal Genome XI Conference. Paper No. P688.
INTEGRATED GENOME MAPPING FOR COTTON IMPROVEMENT -
KOHEL, R.J., YU, J., DONG, J., STEELE, N.L., ZHANG, H., XU, Z. INTEGRATED GENOME MAPPING FOR COTTON IMPROVEMENT. NATIONAL COTTON COUNCIL BELTWIDE COTTON CONFERENCE. 2002.
MOLECULAR CHARACTERIZATION OF GOSSYPIUM GERMPLASM FOR COTTON IMPROVEMENT -
Kohel, R.J., Yu, J. 2002. Molecular characterization of Gossypium germplasm for cotton improvement. In: Engels, J.M.M., Rao, V.R., Brown, A.H.D., Jackson, M.T., editors. Managing Plant Genetic Resources. Cambridge, MA: CAB International Publishing, Inc. p. 67-75.
MOLECULAR TAGGING OF A MAJOR QTL FOR FIBER STRENGTH IN UPLAND COTTON AND INTO MARKER ASSISTED SELECTION -
Zhang, T., Yuan, Y., Yu, J., Guo, W., Kohel, R.J. 2003. Molecular tagging of a major QTL for fiber strength in upland cotton and its marker-assisted selection. Theoretical and Applied Genetics. 106:262-268.
PERMANENT MAPPING POPULATION OF THE COTTON GENOME -
Yu, J., Kohel, R.J. 2002. Permanent mapping population of the cotton genome [abstract]. American Society of Agronomy Meetings. 2002 CDROM.
PERMANENT MAPPING POPULATION OF THE COTTON GENOME -
Yu, J., Kohel, R.J. 2002. Permanent mapping population of the cotton genome. American Society of Agronomy Meetings. 2002 CDROM.
PERMANENT MAPPING POPULATION OF THE COTTON GENOME -
YU, J., KOHEL, R.J. PERMANENT MAPPING POPULATION OF THE COTTON GENOME. AMERICAN SOCIETY OF AGRONOMY MEETINGS. 2002.
TOWARD DEVELOPMENT OF A WHOLE-GENOME, BAC/BIBAC-BASED INTEGRATED PHYSICAL/GENETIC MAP OF THE COTTON GENOME USING THE UPLAND COTTON GENETIC STANDARD TM-1: BAC FINGERPRINTING AND PHYSICAL MAP CONTIG CONSTRUCTION. -
Zhang, H., Yu, J., Kohel, R.J., Stelly, D.M., Xu, Z., Covaleda, L., Ding, K., Zhang, L., Wu, C., Lee, M. 2002. Toward development of a whole-genome, BAC/BIBAC-based integrated physical/genetic map of the cotton genome using the upland cotton genetic standard TM-1: BAC fingerprinting and physical map contig construction [abstract]. International Cotton Genome Initiative Workshop. p. 33.
COTTON GERMPLASM: RESOURCES AND TOOLS FOR CHARACTERIZATION -
Percival,Jr., A.E., Kohel, R.J., Yu, J. 2002. Cotton germplasm: Resources and tools for characterization [abstract]. International Cotton Genome Initiative Workshop. p. 82.
MAJOR-POLYGENE EFFECT ANALYSIS OF SUPER QUALITY FIBER PROPERTIES IN UPLAND COTTON (G. HIRSUTUM. L.) -
Yuan, Y.L., Zhang, T.Z., Guo, W.Z., Yu, J., Kohel, R.J. 2002. Major-polygene effect analysis of super quality fiber properties in upland cotton (g. hirsutum. l.). Acta Genetica Scinica. 29(9):827-834.
GENOMICS RESEARCH IN COTTON -
UPDATE OF THE COTTONDB -
Yu, J., Kohel, R.J., Gupta, P. 2002. Update of the CottonDB [abstract]. Plant, Animal, and Microbe Genomes X Conference. Paper No. W90.
TOWARD DEVELOPMENT OF AN INTEGRATED PHYSICAL/GENETIC MAP OF THE COTTON GENOME: LARGE-SCALE GENERATION OF SSR MARKERS FROM A BAC LIBRARY OF THE COTTON GENETIC STANDARD LINE TM-1 -
Dong, J., Kohel, R.J., Zhang, H., Yu, J. 2002. Toward development of an integrated physical/genetic map of the cotton genome: Large-scale generation of SSR markers from a BAC library of the cotton genetic standard line TM-1 [abstract]. Plant, Animal, and Microbe Genomes X Conference. Paper No. P220.
DEVELOPMENT OF MOLECULAR CYTOGENETIC MARKERS IN COTTON -
Zhang, L., Dong, J., Decanini, L., Le, M.K., Ren, C., Yan, B., Kohel, R.J., Yu, J., Zhang, H., Stelly, D.M. 2002. Development of molecular cytogenetic markers in cotton [abstract]. Plant, Animal, and Microbe Genomes X Conference. Paper No. P285.
WIDE-CROSS RADIATION HYBRIDS(WRHS): A TOOL FOR PHYSICAL MAPPING OF PLANT GENOMES? -
Gao, W., Raska, D., Yu, J., Kohel, R.J., Chen, J., Stelly, D.M. 2002. Wide-cross radiation hybrids(wrhs): A tool for physical mapping of plant genomes? [abstract]. Plant, Animal, and Microbe Genomes X Conference. Paper No. P646.
GENETIC STABILITY OF A MAJOR QTL FOR FIBER STRENGTH AND ITS MARKER-ASSISTED SELECTION IN UPLAND COTTON -
DEVELOPMENT OF INTEGRATIVE SSR MARKERS FROM TM-1 BACS -
Yu, J., Kohel, R.J., Dong, R.J. 2002. Development of integrative SSR markers from TM-1 BACs [abstract]. Proceedings of Beltwide Cotton Conferences. 2002 CDROM.
GENOMIC RESEARCH IN COTTON -
Zhang, H., He, L., Zhang, L., Lee, M., Stelly, D.M., Covaleda, L.M., Robinson, F., Yu, J., Kohel, R.J., Cook, C.G. 2002. Genomic research in cotton [abstract]. Proceedings of Beltwide Cotton Conferences. 2002 CDROM.
TOWARD DEVELOPMENT OF A WHOLE-GENOME, BAC/BIBAC-BASED INTEGRATED PHYSICAL/GENETIC MAP OF THE COTTON GENOME USING THE UPLAND GENETIC STANDARD TM-1:BAC AND BIBAC LIBRARY CONSTRUCTION, SSR MARKER DEVELOPMENT, AND PHYSICAL/GENETI -
YU, J., KOHEL, R.J., ZHANG, H., DONG, J., SUN, S., STEELE, N. TOWARD DEVELOPMENT OF A WHOLE-GENOME, BAC/BIBAC-BASED INTEGRATED PHYSICAL/GENETIC MAP OF THE COTTON GENOME USING THE UPLAND GENETIC STANDARD TM-1: BAC AND BIBAC LIBRARY CONSTRUCTION, SSR MARKER DEVELOPMENT, AND PHYSICAL/GENETICS. PROCEEDINGS OF INTERNATIONAL COTTON GENOME INITIATIVE WORKSHOP. 2002. V. 14. P. 32.
COTTON DATABASES AND WEB RESOURCES -
KOHEL, R.J., YU, J., GUPTA, P., AGRAWAL, R. COTTON DATABASES AND WEB RESOURCES. PROCEEDINGS OF INTERNATIONAL COTTON GENOME INITIATIVE WORKSHOP. 2002. V. 14. P. 104.
GENOMICS RESEARCH IN COTTON -
Zhang, H.B., He, L., Zhang, L., Lee, M.K., Stelly, D.M., Covaleda, L.M., Robinson, F., Yu, J., Kohel, R.J., Cook, C.G. 2002. Genomics research in cotton [abstract]. Proceedings of Beltwide Cotton Conferences. 2002 CDROM.
DEVELOPMENT OF INTEGRATICE SSR MARKERS FROM THE TM-1 BAC -
TESTS OF SIX COTTON (GOSSYPIUM HIRSUTUM L.) MUTANTS FOR ASSOCIATION WITH ANEUPLOIDS -
DEVELOPMENT OF SCAR MARKER LINKED TO AMAJOR QTL FOR HIGH FIBER STRENGTH AND ITS MOLECULAR MARKER ASSISTED SELECTION IN UPLAND COTTON -
Guo, W.Z., Zhang, T.Z., Sheng, X.L., Yu, J., Kohel, R.J. 2003. Development of scar marker linked to a major QTL for high fiber strength and its molecular marker assisted selection in upland cotton. Crop Science. 43:2252-2256.
SSR MOLECULAR TAGGING OF QTLS FOR FIBER STRENTH IN UPLAND COTTON -
Zhang, T., Yuan, Y., Guo, W., Yu, J., Kohel, R.J. 2001. SSR molecular tagging of QTLs for fiber strength in upland cotton. Scienta Agricultra Scinica. 34:363-366.
EVALUATION OF COTTON TRANSFORMATION VIA POLLEN-TUBE PATHWAY -
Kohel, R.J., Yu, J. 2001. Evaluation of cotton transformation via pollen-tube pathway [abstract]. American Society of Agronomy Meetings. 2001 CDROM.
MOLECULAR TAGGING AND MAPPING OF QTLS FOR SUPER QUALITY FIBER PROPERTIES IN UPLAND COTTON -
Yuan, Y.L., Zhang, T.Z., Guo, W.Z., Shen, X.L., Yu, J., Kohel, R.J. 2001. Molecular tagging and mapping of QTLs for super quality fiber properties in upland cotton. Acta Genetica Scinica. 28(12):1-11.
MOLECULAR TAGGING OF A MAJOR QTL FOR FIBER STRENGTH IN UPLAND COTTON AND ITS MARKER-ASSISTED SELECTION -
COTTON GENOME RESEARCH IN THE UNITED STATES -
Yu, J., Kohel, R.J. 2001. Cotton genome research in the United States. In: Jenkins, J.N., Saha, S., editors. Genetic Improvement of Cotton: Emerging Technologies. Enfield, NH: Science Publishers, Inc. p. 103-121.
MOLECULAR MAPPING AND CHARACTERIZATION OF GENES CONTROLLING FIBER QUALITY IN COTTON -
KOHEL, R.J., YU, J., PARK, Y.H., LAZO, G.R. MOLECULAR MAPPING AND CHARACTERIZATION OF GENES CONTROLLING FIBER QUALITY IN COTTON. EUPHYTICA. 2001. V. 121. P. 163-172.
MOLECULAR CHARACTERIZATION OF GOSSYPIUM GERMPLASM -
Yu, J., Kohel, R.J., Percival,Jr., A.E., Lewis, J.L. 2001. Molecular characterization of Gossypium germplasm [abstract]. Plant and Animal Genome IX Conference. Paper No. P633.
BACTERIAL ARTIFICIAL CHROMOSOME (BAC) LIBRARIES CONSTRUCTED FROM THE GENETIC STANDARD OF UPLAND COTTONS -
Dong, J., Kohel, R.J., Zhang, H., Yu, J. 2001. Bacterial artificial chromosome (BAC) libraries constructed from the genetic standard of upland cottons [abstract]. Plant and Animal Genome IX Conference. Paper No. P104.
FINE-MAPPING OF THE GLANDLESS GENE IN COTTON -
Decanini, L.I., Kohel, R.J., Yu, J. 2001. Fine-mapping of the glandless gene in cotton [abstract]. Plant and Animal Genome IX Conference. Paper No. P631.
AN OVERVIEW OF USDA-ARS COTTON GENOME RESEARCH AT COLLEGE STATION, TEXAS. -
Yu, J., Kohel, R.J. 2001. An overview of USDA-ARS cotton genome research at College Station, Texas [abstract]. Plant and Animal Genome IX Conference. Paper No. W62.
AN OVERVIEW OF USDA-ARS COTTON GENOME RESEARCH AT COLLEGE STATION, TEXAS -
MOLECULAR CHARACTERIZATOIN OF GOSSYPIUM GERMPLASM -
BACTERIAL ARTIFICIAL CHROMOSOME(BAC)LIBRARIES CONSTRUCTED FROM THE GENETIC STANDARD OF UPLAND COTTON -
FINE-MAPPING OF THE GLANDLESS GENE IN COTTON -
MOLECULAR TAGGING OF 1 MAFOR QTL FOR FIBER STRENGTH IN UPLAND COTTON -
EVALUATION OF COTTON FIBER QUALITY QTLS FOR MOLECULAR BREEDING -
Yu, J., Kohel, R.J., Zhang, T. 2001. Evaluation of cotton fiber quality QTLs for molecular breeding. In: Proceedings of the Genetic Control of Cotton Fiber and Seed Quality Workshop, December 5-6, 2000, San Antonio, Texas. p. 175-180.
COTTON GERMPLASM RESOURCES FOR IMPROVING FIBER QUALITY AND MOLECULAR TO0LS FOR EVALUATION -
KOHEL, R.J., YU, J., PERCIVAL, JR., A.E., DONG, J., ZHANG, H. COTTON GERMPLASM RESOURCES FOR IMPROVING FIBER QUALITY AND MOLECULAR TOOLS FOR EVALUATION. PROCEEDINGS OF GENETIC CONTROL OF COTTON FIBER AND SEED QUALITY WORKSHOP. 2000. P. 175-180.
COTTONSEED QUALITY AND CREATION OF GLANDING PLANTS WITH GLANDLESS SEED -
KOHEL, R.J., YU, J., DECANINI, L.I., DONG, J., ZHANG, H. COTTONSEED QUALITY AND CREATION OF GLANDING PLANTS WITH GLANDLESS SEED. PROCEEDINGS OF GENETIC CONTROL OF COTTON FIBER AND SEED QUALITY WORKSHOP. 2000. P. 271-277.
NEW GENOMIC TOOLS FOR COTTON IMPROVEMENT -
Yu, J., Kohel, R.J., Dong, J., Zhang, H. 2001. New genomic tools for cotton improvement [abstract]. Proceedings of Beltwide Cotton Conferences. p. 1415.
APPLICATIONS OF LARG-INSERT DNA LIBRARIES IN COTTON GENOMICS -
IDENTIFICATION OF GENOMIC REGIONS THAT AFFECT GRAIN MOULD INCIDENCE AND OTHER TRAITS OF AGRONOMIC IMPORTANCE IN SORGHUM -
Klein, R.R., Rodriguez-Herrera, R., Schlueter, J.A., Klein, P.E., Yu, J., Rooney, W.L. 2001. Identification of genomic regions that affect grain mould incidence and other traits of agronomic importance in sorghum. Journal of Theoretical and Applied Genetics. 102:307-319.
LINKAGE ANALYSIS OF TRANSGENES INSERTED INTO COTTON VIA AGROBACTERIUM TUMEFACIENS TRANSFORMATION -
CURRENT STATUS OF THE COTTON DB, A GENOME DATABASE FOR GOSSYPIUM SPP -
Kohel, R.J., Yu, J., Gupta, P. 2000. Current status of the CottonDB, a genome database for Gossypium spp [abstract]. Plant and Animal Genome VIII Conference. Paper No. W74.
ISOLATION AND CHARACTERIZATION OF DISEASE RESISTANCE (R) GENES IN COTTON -
CONSTRUCTION OF A COTTON BAC LIBRARY AND ITS APPLICATION TO GENE ISOLATION -
Yu, J., Kohel, R.J., Zhang, H., Dong, J., Decanini, L. 2000. Construction of a cotton BAC library and its application to gene isolation [abstract]. Plant and Animal Genome VIII Conference. Paper No. P146.
LINKAGE ANALYSIS OF TRANSGENES INSERTED INTO COTTON VIA AGROBACTERIUM TUMEFACIENS TRANSFORMATION -
TOWARD POSITIONAL CLONING OF A MAJOR GLANDLESS GENE IN COTTON -
YU, J., KOHEL, R.J., DONG, J., DECANINI, L.I. TOWARD POSITIONAL CLONING OF A MAJOR GLANDLESS GENE IN COTTON. PROCEEDINGS OF BELTWIDE COTTON CONFERENCES. 2000. V. 1. P. 516-517.
CONSTRUCTION OF A COTTON BAC LIBRARY AND ITS APPLICATIONS TO GENE ISOLATION -
CURRENT STATUS OF THE COTTONDB, A GENOME DATABASE FOR GOSSYPIUM SPP -
MOLECULAR MAPPING OF A MAJOR GENE FOR GLANDLESS COTTONSEED -
YU, J., KOHEL, R.J. MOLECULAR MAPPING OF A MAJOR GENE FOR GLANDLESS COTTONSEED. AMERICAN SOCIETY OF AGRONOMY MEETING. 1999. ABSTRACT P. 155.
COTTON GENOMICS: A REVIEW -
COTTON GENOME DATABASE -
LOCALIZATION AND CHARACTERIZATION OF GENES CONTROLLING FIBER QUALITY PROPERTIES IN COTTON GENOMES (G.BARBADENSE AND G.HIRSUTUM) -
YU, J., KOHEL, R.J., PARK, Y., LAZO, G.R. LOCALIZATION AND CHARACTERIZATION OF GENES CONTROLLING FIBER QUALITY PROPERTIES IN COTTON GENOMES (G.BARBADENSE AND G.HIRSUTUM). PLANT AND ANIMAL GENOME CONFERENCE. 1999. ABSTRACT P. 296.
COTTON GENOME MAPPING AND APPLICATIONS -
YU, J., KOHEL, R.J. COTTON GENOME MAPPING AND APPLICATIONS. PLANT AND ANIMAL GENOME CONFERENCE. 1999. ABSTRACT P. 60.
UPDATE OF THE COTTON GENOME MAPPING -
Yu, J., Kohel, R.J. 1999. Update of the cotton genome mapping [abstract]. Proceedings of Beltwide Cotton Conferences. 1:439.
COTTON GENOME MAPPING AND COTTON GENOME DATABASE -
YU, J., KOHEL, R.J. COTTON GENOME MAPPING AND COTTON GENOME DATABASE. PLANT AND ANIMAL GENOME CONFERENCE. 1998. ABSTRACT P. 75.
MOLECULAR MAPPING OF THE COTTON GENOME: QTL ANALYSIS OF FIBER QUALITY CHARACTERISTICS -
YU, J., PARK, Y., LAZO, G.R., KOHEL, R.J. MOLECULAR MAPPING OF THE COTTON GENOME: QTL ANALYSIS OF FIBER QUALITY CHARACTERISTICS. PLANT AND ANIMAL GENOME CONFERENCE. 1998. ABSTRACT P. 352.
MOLECULAR MAPPING OF THE COTTON GENOME: QTL ANALYSIS OF FIBER QUALITY PROPERTIES -
YU, J., PARK, Y., LAZO, G.R., KOHEL, R.J. MOLECULAR MAPPING OF THE COTTON GENOME: QTL ANALYSIS OF FIBER QUALITY PROPERTIES. PROCEEDINGS OF BELTWIDE COTTON CONFERENCES. 1998. V. 1. P. 485.
MOLECULAR MAPPING OF THE COTTON GENOME -
MAPPING COTTON GENOME WITH MOLECULAR MARKERS -
MAPPING COTTON GENOME WITH MOLECULAR MARKERS -
YU, J., PARK, Y., LAZO, G.R., KOHEL, R.J. MAPPING COTTON GENOME WITH MOLECULAR MARKERS. PROCEEDINGS OF BELTWIDE COTTON CONFERENCES. 1997. P. 447.
AFLP MAPPING IN COTTON -
Reddy, A., Haisler, R.M., Yu, J., Kohel, R.J. 1997. AFLP mapping in cotton [abstract]. Plant and Animal Genome V Conference. Paper No. P80.
QTL ANALYSIS OF FIBER STRENGTH IN COTTON -
MOLECULAR MAPPING OF MONOGENIC TRAITS IN COTTON -
DEVELOPMENT OF AMPLIFIED FRAGMENT LENGTH POLYMORPHIC MARKERS IN COTTON -
Reddy, A.S., Haisler, R.M., Weller, J.W., Yu, J., Kohel, R.J. 1996. Development of amplified fragment length polymorphic markers in cotton [abstract]. Plant Genome IV Conference. Paper No. P74.
MOLECULAR MAPPING OF THE COTTON GENOME AND ITS APPLICATIONS TO COTTON IMPROVEMENT -
YU, J., PARK, Y., LAZO, G.R., WOLFF, N.C., KOHEL, R.J. MOLECULAR MAPPING OF THE COTTON GENOME AND ITS APPLICATIONS TO COTTON IMPROVEMENT. PROCEEDINGS OF BELTWIDE COTTON CONFERENCES. 1996. V. 1. ABSTRACT P. 636.
ARS News Articles
Last Modified: 5/2/2016
Footer Content Back to Top of Page