Tracy Nicholson
Virus and Prion Research
Research Microbiologist
Phone: (515) 337-7349
Fax: (515) 337-7149
(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
Publications
(Clicking on the reprint icon
will take you to the publication reprint.)
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Population structure and genetic diversity of streptococcus suis isolates obtained from the United States
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Nicholson, T.L., Kalalah, A.A., Eppinger, M. 2023. Population Structure and Genetic Diversity of Streptococcus suis Isolates Obtained from the United States. Frontiers in Immunology. https://doi.org/10.3389/fmicb.2023.1250265.
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The contribution of BvgR, RisA, and RisS to global gene regulation, intracellular cyclic-di-GMP levels, motility, and biofilm formation in bordetella bronchiseptica
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Nicholson, T.L., Waack, U., Fleming, D.S., Chen, Q., Miller, L.C., Merkel, T.J., Stibitz, S. 2024. The contribution of BvgR, RisA, and RisS to global gene regulation, intracellular cyclic-di-GMP levels, motility, and biofilm formation in bordetella bronchiseptica . Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2024.1305097.
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Comparative virulence and antimicrobial resistance distribution of streptococcus suis isolates obtained from the United States
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Nicholson, T.L., Bayles, D.O. 2022. Comparative virulence and antimicrobial resistance distribution of streptococcus suis isolates obtained from the United States. Frontiers in Microbiology. 13. https://doi.org/10.3389/fmicb.2022.1043529.
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Genome sequences of Streptococcus suis isolates obtained from pigs in the United States between 2015 and 2017
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Nicholson, T.L., Shore, S. 2022. Genome sequences of Streptococcus suis isolates obtained from pigs in the United States between 2015 and 2017. Microbiology Resource Announcements. 11(8):e01067-21. https://doi.org/10.1128/mra.01067-21.
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Complete genome sequence of Escherichia coli Antibiotic-Resistance Isolate AR Bank #0346
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Stuart, K.L., Bayles, D.O., Shore, S., Nicholson, T.L. 2021. Complete genome sequence of Escherichia coli Antibiotic-Resistance Isolate AR Bank #0346. Microbiology Resource Announcements. 10(23). https://doi.org/10.1128/MRA.00305-21.
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Comparative virulence and genomic analysis of streptococcus suis isolates
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Nicholson, T.L., Waack, U., Anderson, T.K., Bayles, D.O., Zaia, S.R., Goertz, I., Eppinger, M., Hau, S.J., Brockmeier, S., Shore, S. 2021. Comparative virulence and genomic analysis of streptococcus suis isolates. Frontiers in Microbiology. 11. Article 620843. https://doi.org/10.3389/fmicb.2020.620843.
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Comparative virulence and genomic analysis of streptococcus suis isolates
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Evaluation of the recombinant proteins RlpB and VacJ as a vaccine for protection against Glaesserella parasuis in pigs
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Hau, S.J., Luan, S., Loving, C.L., Nicholson, T.L., Wang, J., Peters, S.E., Seilly, D., Weinert, L., Langford, P.R., Rycroft, A., Wren, B.W., Maskell, D.J., Tucker, A.W., Brockmeier, S. 2020. Evaluation of the recombinant proteins RlpB and VacJ as a vaccine for protection against Glaesserella parasuis in pigs. BMC Veterinary Research. 16:167. https://doi.org/10.1186/s12917-020-02377-5.
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Complete genome sequence of Bordetella bronchiseptica strain KM22
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Nicholson, T.L., Bayles, D.O., Shore, S. 2020. Complete genome sequence of Bordetella bronchiseptica strain KM22. Microbiology Resource Announcements. 9(4). https://doi.org/10.1128/MRA.01207-19.
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Complete genome sequence of Escherichia coli antibiotic resistance (AR) isolate bank #0349
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Stuart, K.L., Shore, S., Nicholson, T.L. 2019. Complete genome sequence of Escherichia coli antibiotic resistance (AR) isolate bank #0349. Microbiology Resource Announcements. 8(48). https://doi.org/10.1128/MRA.01078-19.
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Contribution of the BvgR and RisAS regulons to Bordetella bronchiseptica biology
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Subinhibitory concentrations of amoxicillin, lincomycin, and oxytetracycline commonly used to treat swine increase Streptococcus suis biofilm formation
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Waack, U., Nicholson, T.L. 2018. Subinhibitory concentrations of amoxicillin, lincomycin, and oxytetracycline commonly used to treat swine increase Streptococcus suis biofilm formation. Frontiers in Microbiology. 9:2707. https://doi.org/10.3389/fmicb.2018.02707.
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Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates
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Nicholson, T.L., Brunelle, B.W., Bayles, D.O., Alt, D.P., Shore, S. 2018. Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates. PLoS One. 13(11):e0205700. https://doi.org/10.1371/journal.pone.0205700.
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Comparison of adjuvanted-whole inactivated virus and live-attenuated virus vaccines against challenge with contemporary, antigenically distinct H3N2 influenza A viruses
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Abente, E.J., Rajao, D.S., Santos, J., Kaplan, B.S., Nicholson, T.L., Brockmeier, S.L., Gauger, P.C., Perez, D.R., Vincent, A.L. 2018. Comparison of adjuvanted-whole inactivated virus and live-attenuated virus vaccines against challenge with contemporary, antigenically distinct H3N2 influenza A viruses. Journal of Virology. 92(22):e01328-18. https://doi.org/10.1128/JVI.01323-18.
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Antimicrobial resistance distribution among methicillin resistant Staphylococcus aureus sequence type (ST) 5 isolates from health care and agricultural sources
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Hau, S.J., Haan, J.S., Davies, P.R., Frana, T., Nicholson, T.L. 2018. Antimicrobial resistance distribution differs among methicillin resistant Staphylococcus aureus sequence type (ST) 5 isolates from health care and agricultural sources. Frontiers in Microbiology. 9:2102. https://doi.org/10.3389/fmicb.2018.02102.
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Live-attenuated virus vaccine provides complete protection against antigenically distinct H3N2 influenza A viruses
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Rajao, D., Vincent, A.L., Santos, J., Kaplan, B.S., Nicholson, T.L., Brockmeier, S., Gauger, P.C., Perez, D.R., Abente, E.J. 2018. Live-attenuated virus vaccine provides complete protection against antigenically distinct H3N2 influenza A viruses [abstract]. p. none assigned.
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Single nucleotide polymorphism analysis indicates genetic distinction and reduced diversity of agricultural methicillin resistant Staphylococcus aureus (MRSA) ST5 isolates compared to clinical MRSA ST5 isolates
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Hau, S.J., Allué-Guardia, A., Rusconi, B., Haan, J.S., Davies, P.R., Frana, T.S., Eppinger, M., Nicholson, T.L. 2018. Single nucleotide polymorphism analysis indicates genetic distinction and reduced diversity of swine-associated methicillin resistant Staphylococcus aureus (MRSA) ST5 isolates compared to clinical MRSA ST5 isolates. Frontiers in Microbiology. 9:2078. https://doi.org/10.3389/fmicb.2018.02078.
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Blood or serum exposure induce global transcriptional changes, altered antigenic profile, and increased cytotoxicity by classical Bordetellae
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Gestal, M.C., Rivera, I., Howard, L.K., Dewan, K.K., Soumana, I.H., Dedloff, M., Nicholson, T.L., Linz, B., Harvill, E.T. 2018. Blood or serum exposure induce global transcriptional changes, altered antigenic profile, and increased cytotoxicity by classical Bordetellae. Frontiers in Microbiology. 9:1969. https://doi.org/10.3389/fmicb.2018.01969.
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Comparative genomic and virulence analysis of Streptococcus suis isolates
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Genotypic differences between LA-MRSA ST5 and MRSA ST5 from humans with no swine contact
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Hau, S.J., Allué-Guardia, A., Rusconi, B., Sun, J., Davies, P.R., Frana, T.S., Eppinger, M., Nicholson, T.L. 2018. Genotypic differences between LA-MRSA ST5 and MRSA ST5 from humans with no swine contact. In: Proceedings of the 49th Annual Meeting of the American Association of Swine Veterinarians, March 3-6, 2018, San Diego, California. p. 57-60.
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Interferon alpha inhibits viral replication of a live-attenuated porcine reproductive and respiratory syndrome virus vaccine preventing development of an adaptive immune response in swine
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Brockmeier, S.L., Loving, C.L., Eberle, K.C., Hau, S.J., Buckley, A., Van Geelen, A., Montiel, N.A., Nicholson, T., Lager, K.M. 2017. Interferon alpha inhibits replication of a live-attenuated porcine reproductive and respiratory syndrome virus vaccine preventing development of an adaptive immune response in swine. Veterinary Microbiology. 212:48-51.
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Adherence capacity of methicillin resistant Staphylococcus aureus sequence type (ST) 5 isolates from health care and agricultural sources
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Hau, S.J., Kellner, S., Eberle, K.C., Waack, U., Brockmeier, S.L., Haan, J.S., Davies, P.R., Frana, T., Nicholson, T.L. 2018. Methicillin-resistant Staphylococcus aureus sequence type (ST) 5 isolates from health care and agricultural sources adhere equivalently to human keratinocytes. Applied Environmental Microbiology. 84(2):e02073-17. https://doi.org/10.1128/AEM.02073-17.
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Draft genome sequences of 64 swine associated LA-MRSA ST5 isolates from the USA
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Hau, S.J., Bayles, D.O., Alt, D.P., Frana, T.S., Nicholson, T.L. 2017. Draft genome sequences of 63 swine-associated methicillin-resistant Staphylococcus aureus sequence type 5 isolates from the United States. Genome Announcements. 5(44):e01081-17.
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Vaccine development for protection against systemic infections with Streptococcus suis and Haemophilus parasuis in swine
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Draft genome sequences of 50 MRSA ST5 isolates obtained from a U.S. hospital
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Hau, S.J., Bayles, D.O., Alt, D.P., Nicholson, T.L. 2017. Draft genome sequences of 50 methicillin-resistant Staphylococcus aureus sequence type 5 isolates obtained from a U.S. hospital. Genome Announcements. 5(44):e01083-17.
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Draft genome sequences of 1 MSSA and 7 MRSA ST5 isolates obtained from California
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Hau, S.J., Bayles, D.O., Alt, D.P., Nicholson, T.L. 2017. Draft genome sequences of one methicillin-sensitive and seven methicillin-resistant Staphylococcus aureus sequence type 5 Isolates obtained in California. Genome Announcements. 5(42):e01084-17.
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Draft genome sequences of 9 LA-MRSA ST5 isolates obtained from humans after short term swine contact
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Hau, S.J., Bayles, D.O., Alt, D.P., Frana, T.S., Nicholson, T.L. 2017. Draft genome sequences of nine livestock-associated methicillin-resistant Staphylococcus aureus sequence type 5 isolates obtained from humans after short-term swine contact. Genome Announcements. 5(41):e01080-17.
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Draft genome sequences of 14 swine associated LA-MRSA ST398 isolates from the U.S.
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Hau, S.J., Bayles, D.O., Alt, D.P., Frana, T.S., Nicholson, T.L. 2017. Draft genome sequences of 14 livestock-associated methicillin-resistant Staphylococcus aureus sequence type 398 isolates from swine farms in the United States. Genome Announcements. 5(44):e01082-17.
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Draft genome sequences of 9 LA-MRSA ST5 isolates from humans with long term swine contact
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Hau, S.J., Bayles, D.O., Alt, D.P., Davies, P.R., Haan, J.S., Nicholson, T.L. 2017. Draft genome sequences of nine livestock-associated methicillin-resistant Staphylococcus aureus sequence type 5 isolates from humans with long-term swine contact. Genome Announcements. 5(41):e01079-17.
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Bordetellosis
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Complete genome sequence of livestock associated methicillin resistant Staphylococcus aureus ST398 isolated from swine in USA
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Hau, S.J., Bayles, D.O., Alt, D.P., Frana, T.S., Nicholson, T.L. 2017. Complete genome sequence of livestock-associated methicillin-resistant Staphylococcus aureus sequence type 398 isolated from swine in the United States. Genome Announcements. 5(32):pii: e00790-17. https://doi.org/10.1128/genomeA.00790-17.
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Complete genome sequence of a swine associated LA-MRSA ST5 isolate from the USA
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Hau, S.J., Bayles, D.O., Alt, D.P., Frana, T.S., Nicholson, T.L. 2017. Complete genome sequence of a swine associated LA-MRSA ST5 isolate from the USA. Genome Announcements. 5(32):e00791-17. https://doi.org/10.1128%2FgenomeA.00791-17.
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The Bordetella Bps polysaccharide is required for biofilm formation and persistence in the lower respiratory tract of swine
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Nicholson, T.L., Brockmeier, S.L., Sukumar, N., Paharik, A.E., Lister, J.L., Horswill, A.R., Kehrli, M.E. Jr., Loving, C.L., Shore, S.M., Deora, R. 2017. The Bordetella Bps polysaccharide is required for biofilm formation and enhances survival in the lower respiratory tract of swine. Infection and Immunity. 00261-17. doi:10.1128/IAI.00261-17.
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Zinc resistance within swine associated methicillin resistant Staphylococcus aureus (MRSA) isolates in the USA is associated with MLST lineage
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Hau, S.J., Frana, T.S., Sun, J., Davies, P.R., Nicholson, T.L. 2017. Zinc resistance within swine associated methicillin resistant Staphylococcus aureus (MRSA) isolates in the USA is associated with MLST lineage. Applied and Environmental Microbiology. pii: AEM.00756-17. doi: 10.1128/AEM.00756-17.
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Comparative genomic and transcriptional analysis of virulent and non-virulent Haemophilus parasuis isolates
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Potential use of outer membrane proteins as subunit vaccines against Haemophilus parasuis
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The quest for cross protective factors of Haemophilus parasuis using 2-D gel electrophoresis
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Effect of in-feed versus injected oxytetracycline on piglet nasal and tonsil microbiota
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Comparison of Asian porcine high fever disease isolates of porcine reproductive and respiratory syndrome virus to United States isolates for their ability to cause disease and secondary bacterial infection in swine
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Brockmeier, S.L., Loving, C.L., Palmer, M.V., Spear, A., Nicholson, T.L., Faaberg, K.S., Lager, K.M. 2017. Comparison of Asian porcine high fever disease isolates of porcine reproductive and respiratory syndrome virus to United States isolates for their ability to cause disease and secondary bacterial infection in swine. Veterinary Microbiology. 203:6-17.
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Complete genome sequences of two Staphylococcus aureus ST5 isolates from California, USA
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Hau, S.J., Bayles, D.O., Alt, D.P., Nicholson, T.L. 2017. Complete genome sequences of two Staphylococcus aureus sequence type 5 isolates from California, USA. Genome Announcements. 5:e00099-17. doi.org/10.1128/genomeA.00099-17.
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Draft genome sequences of 14 Staphylococcus aureus ST5 isolates from California, USA
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Hau, S.J., Bayles, D.O., Alt, D.P., Nicholson, T.L. 2017. Draft genome sequences of 14 Staphylococcus aureus sequence type 5 isolates from California, USA. Genome Announcements. 5(13):e00098-17. doi.org/10.1128/genomeA.00098-17.
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The B. bronchiseptica type III secretion system does not negatively affect the protective immunity induced by influenza A virus vaccines
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Nicholson, T.L., Vincent, A.L., Brockmeier, S., Rajão, D.S., Abente, E.J., Gauger, P.C. 2016. The B. bronchiseptica type III secretion system does not negatively affect the protective immunity induced by influenza A virus vaccines. Conference of Research Workers in Animals Diseases Meeting. Paper No. P139.
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Successful protection against heterologous strains of Haemophilus parasuis: the quest for cross protective factors
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Potential use of G-CSF for protection against Streptococcus suis infection in swine
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Brockmeier, S., Loving, C.L., Kehrli Jr, M.E., Eberle, K.C., Hau, S.J., Mou, K.T., Nicholson, T.L. 2016. Potential use of G-CSF for protection against Streptococcus suis infection in swine. Conference Research Workers Disease Meeting. Paper No. P65.
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Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species
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Linz, B., Ivanov, Y., Preston, A., Brinkac, L., Parkhill, J., Kim, M., Harris, S.R., Goodfield, L.L., Fry, N.K., Gorring, A.R., Nicholson, T.L., Register, K.B., Losada, L., Harvill, E.T. 2016. Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species. Biomed Central (BMC) Genomics. 17:767. doi: 10.1186/s12864-016-3112-5.
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Comparison of ribotyping and sequence-based typing for discriminating
among isolates of Bordetella bronchiseptica
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Register, K.B., Nicholson, T.L., Brunelle, B.W. 2016. Comparison of ribotyping and sequence-based typing for discriminating among isolates of Bordetella bronchiseptica. Journal of Microbiological Methods. 129:117-126. doi: 10.1016/j.mimet.2016.08.008.
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The B. bronchiseptica type III secretion system does not negatively affect the protective immunity induced by influenza A virus vaccines
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Comparison of Ribotyping and MLST for Genotyping Bordetella bronchiseptica
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Comparative genomic analysis of the swine pathogen Bordetella bronchiseptica strain KM22 to other B. bronchiseptica sequenced genomes
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Nicholson, T.L., Shore, S., Register, K.B., Bayles, D.O., Kingsley, R.A., Brunelle, B.W. 2016. Comparative genomic analysis of the swine pathogen Bordetella bronchiseptica strain KM22. Veterinary Microbiology. 182:87-94.
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Comparative prevalence of immune evasion complex genes associated with beta-hemolysin converting bacteriophages in MRSA ST5 isolates from swine, swine facilities, humans with swine contact, and humans with no swine contact
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Hau, S.J., Sun, J., Davies, P.R., Frana, T.S., Nicholson, T.L. 2015. Comparative prevalence of immune evasion complex genes associated with beta-hemolysin converting bacteriophages in MRSA ST5 isolates from swine, swine facilities, humans with swine contact, and humans with no swine contact. PLoS One. 10(11):e0142832.
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Absence of human innate immune evasion complex in LA-MRSA ST5 strains isolated from pigs, swine facilities, and humans with swine contact
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Hau, S., Frana, I., Davies, P.R., Sun, J., Nicholson, T.L. 2015. Absence of human innate immune evasion complex in LA-MRSA ST5 strains isolated from pigs, swine facilities, and humans with swine contact. 4th ASM-ESCMID Conference on Methicillin-resistant Staphylococci in Animals: Veterinary and Public Health Implications. Abstract No. 29.
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Draft genome sequences of nine Streptococcus suis strains isolated in the United States
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Hau, S.J., Bayles, D.O., Alt, D.P., Brockmeier, S.L., Frana, T.S., Nicholson, T.L. 2015. Draft genome sequences of nine Streptococcus suis strains isolated in the United States. Genome Announcements. 3(6):e01301-15.
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Bordetella pertussis transmission
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Trainor, E., Nicholson, T.L., Merkel, T.J. 2015. Bordetella pertussis transmission. Pathogens and Disease. 10.1093/femspd/ftv068.
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Isolation and characterization of outer membrane vesicles from Haemophilus parasuis
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Partial heterologous protection against Glässer’s disease in pigs colonized with an avirulent isolate of Haemophilus parasuis
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Expression of bvg-repressed genes in Bordetella pertussis is controlled by RisA through a novel c-di-GMP signaling pathway
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Trainor, E.A., Warfel, J.M., Nicholson, T.L., Koestler, B.J., Zimmerman, L.I., Kelly, V.K., Waters, C.M., Merkel, T.J. 2014. Expression of bvg-repressed genes in Bordetella pertussis is controlled by RisA through a novel c-di-GMP signaling pathway. 114th General Meeting of the American Society for Microbiology. Paper No. 728. p. 127.
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Introduction of plasmid DNA into an ST398 livestock-associated methicillin-resistant Staphylococcus aureus strain
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Plaut, R.D., Riggins, D.P., Boatwright Jr, W.D., Loving, C.L., Register, K.B., Nicholson, T.L., Stibitz, S. 2014. Introduction of plasmid DNA into an ST398 livestock-associated methicillin-resistant Staphylococcus aureus strain. 2014 Molecular Genetics of Bacteria and Phages Meeting. Paper No. 47. p. 3.
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Virulence and draft genome sequence overview of multiple strains of the swine pathogen Haemophilus parasuis
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Brockmeier, S.L., Register, K.B., Kuehn, J.S., Nicholson, T.L., Loving, C.L., Shore, S.M., Phillips, G.J. 2014. Virulence and draft genome sequence overview of multiple strains of the swine pathogen Haemophilus parasuis. PLoS ONEe. 9(8):e103787.
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Draft genome sequence of the Bordetella bronchiseptica swine isolate KM22
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Nicholson, T.L., Shore, S., Bayles, D.O., Register, K.B., Kingsley, R.A. 2014. Draft genome sequence of the Bordetella bronchiseptica swine isolate KM22. Genome Announcements. 2(4). e00670-14. DOI: 10.1128/genomeA.00670-14.
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A role for the sensor kinase PlrS in controlling the response of Bordetella bronchiseptica to increased CO2 levels
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Wilk, A., Mchargue, B., Nicholson, T.L., Bonenfant, G., Ramirez, J., Julio, S. 2014. A role for the sensor kinase PlrS in controlling the response of Bordetella bronchiseptica to increased CO2 levels. 114th General Meeting of the American Society for Microbiology. Paper No. 346. p. 189.
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Comparative studies of the genome, virulence, and protection of 10 Haemophilus parasuis strains
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Molecular characterization of a clinical Bordetella bronchiseptica strain isolated from a cystic fibrosis patient
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Sukumar, N., Nicholson, T.L., Conover, M.S., Ganguly, T., Deora, R. 2014. Comparative analyses of a cystic fibrosis isolate of Bordetella bronchiseptica reveal differences in important pathogenic phenotypes. Infection and Immunity. 82(4):1627-1637.
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The Bordetella bronchiseptica type III secretion system is required for persistence and disease severity but not transmission in swine
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Nicholson, T.L., Brockmeier, S.L., Loving, C.L., Register, K.B., Kehrli, Jr., M.E., Shore, S.M. 2014. The Bordetella bronchiseptica type III secretion system is required for persistence and disease severity but not transmission in swine. Infection and Immunity. 82(3):1092-1103.
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Comparative virulence and genomic analysis of 10 strains of Haemophilus parasuis
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Cyclic di-GMP regulation of the bvg-repressed genes and the orphan response regulator RisA in Bordetella pertussis
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Warfel, J.M., Nicholson, T.L., Kelly, V.K., Merkel, T.J. 2013. Cyclic di-GMP regulation of the bvg-repressed genes and the orphan response regulator RisA in Bordetella pertussis. 10th International Symposium on Bordetella. p. 24.
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BpsR functions as a dual activator and repressor of Bordetella gene expression
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Redfern, C., Ganguly, T., Conover, M.S., Nicholson, T.L., Deora, R. 2013. BpsR functions as a dual activator and repressor of Bordetella gene expression. 10th International Symposium on Bordetella. p. 46.
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Livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA) isolates of swine origin form robust biofilms
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Nicholson, T.L., Shore, S.M., Smith, T.C., Fraena, T.S. 2013. Livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA) isolates of swine origin form robust biofilms. PLoS One. 8(8):e73376.
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Virulence, transmission, and heterologous protection of four isolates of Haemophilus parasuis
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Brockmeier, S.L., Loving, C.L., Mullins, M., Register, K.B., Nicholson, T.L., Wiseman, B.S., Baker, R.B., Kehrli, Jr., M.E. 2013. Virulence, transmission, and heterologous protection of four isolates of Haemophilus parasuis. Clinical and Vaccine Immunology. 20(9):1466-1472.
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Identification and tracking genomic variability using a PRRSV specific microarray platform
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Nicholson, T.L., Spear, A., Wilson, T., Fischer, K.F., Faaberg, K.S., Brockmeier, S. 2013. Identification and tracking genomic variability using a PRRSV specific microarray platform. American Society for Microbiology 113th General Meeting. Paper No. 827. p. 132.
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Two Asian highly pathogenic strains of Type 2 PRRSV in United States swine
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Faaberg, K., Lager, K., Brockmeier, S., Guo, B., Swenson, S., Yang, H., Kehrli, M., Nicholson, T., Miller, L., Henningson, J., Schlink, S., Kappes, M. 2013. Two Asian highly pathogenic strains of Type 2 PRRSV in United States swine. Positive Strand RNA Viruses, Keystone Symposia on Molecular and Cellular Biology. Paper No. 1063.
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Transcriptome profiling reveals stage-specific production and requirement of flagella during biofilm development in Bordetella bronchiseptica
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Nicholson, T.L., Conover, M.S., Deora, R. 2012. Transcriptome profiling reveals stage-specific production and requirement of flagella during biofilm development in Bordetella bronchiseptica. PLoS ONE. 7(11):e49166.
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Changes in circulating and thymic lymphocyte populations following infection with strains of North American or highly pathogenic PRRSV
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Loving, C.L., Brockmeier, S.L., Palmer, M.V., Spear, A.R., Faaberg, K.S., Nicholson, T.L. 2012. Changes in circulating and thymic lymphocyte populations following infection with strains of North American or highly pathogenic PRRSV. International PRRS Symposium 2012. Poster No. 77.
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Comparison of the pathogenesis of Asian highly-pathogenic PRRSV isolates to U.S. isolates and their ability to cause secondary bacterial infection in swine
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Brockmeier, S.L., Loving, C.L., Palmer, M.V., Spear, A.R., Faaberg, K.S., Nicholson, T.L. 2012. Comparison of the pathogenesis of Asian highly-pathogenic PRRSV isolates to U.S. isolates and their ability to cause secondary bacterial infection in swine. International PRRS Symposium 2012. Poster No. 64.
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Changes in circulating and thymic lymphocyte populations following infection with strains of North American or highly pathogenic PRRSV
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Loving, C.L., Brockmeier, S.L., Palmer, M.V., Spear, A.R., Faaberg, K.S., Nicholson, T.L. 2012. Changes in circulating and thymic lymphocyte populations following infection with strains of North American or highly pathogenic PRRSV. Conference of Research Workers in Animal Diseases Annual Meeting. Paper No. 185.
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Comparison of Asian highly-pathogenic PRRSV isolates to US isolates for their ability to cause secondary bacterial infection in swine
- (Abstract Only)
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Brockmeier, S.L., Loving, C.L., Palmer, M.V., Spear, A.R., Faaberg, K.S., Nicholson, T.L. 2012. Comparison of Asian highly-pathogenic PRRSV isolates to US isolates for their ability to cause secondary bacterial infection in swine. Conference of Research Workers in Animal Diseases. Paper No. 184.
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Identification of a CO2 responsive regulon in Bordetella
- (Peer Reviewed Journal)
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Hester, S.E., Lui, M., Nicholson, T., Nowacki, D., Harvil, E.T. 2012. Identification of a CO2 responsive regulon in Bordetella. PLoS One. 7(10):e47635.
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Infection of United States swine with a Chinese highly pathogenic strain of porcine reproductive and respiratory syndrome virus
- (Peer Reviewed Journal)
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Guo, B., Lager, K.M., Henningson, J.N., Miller, L.C., Schlink, S.N., Kappes, M.A., Kehrli, Jr., M.E., Brockmeier, S.L., Nicholson, T.L., Yang, H., Faaberg, K.S. 2013. Experimental infection of United States swine with a Chinese highly pathogenic strain of porcine reproductive and respiratory syndrome virus. Virology. 435(2):372-384.
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Genomic sequence and virulence comparison of four type 2 porcine reproductive and respiratory syndrome virus strains
- (Peer Reviewed Journal)
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Brockmeier, S.L., Loving, C.L., Vorwald, A.C., Kehrli, Jr., M.E., Baker, R.B., Nicholson, T.L., Lager, K.M., Miller, L.C., Faaberg, K.S. 2012. Genomic sequence and virulence comparison of four Type 2 porcine reproductive and respiratory syndrome virus strains. Virus Research. 169(1):212-221.
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Swine MRSA isolates form robust biofilms
- (Abstract Only)
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Nicholson, T.L. 2012. Swine MRSA isolates form robust biofilms. 112th General Meeting of the American Society for Microbiology. Paper No. 1537. p. 151.
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The presence of alpha interferon at the time of infection alters the innate and adaptive immune responses to porcine reproductive and respiratory syndrome virus
- (Peer Reviewed Journal)
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Brockmeier, S.L., Loving, C.L., Nelson, E.A., Miller, L.C., Nicholson, T.L., Register, K.B., Grubman, M.J., Brough, D.E., Kehrli, Jr., M.E. 2012. The presence of alpha interferon at the time of infection alters the innate and adaptive immune responses to porcine reproductive and respiratory syndrome virus. Clinical and Vaccine Immunology. 19(4):508-514.
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Effects of interferon-alpha on the immune response to porcine reproductive and respiratory syndrome virus
- (Peer Reviewed Journal)
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Phenotypic modulation of the Bvg+ phase is not required for pathogenesis and transmission of Bordetella bronchiseptica in swine
- (Peer Reviewed Journal)
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Nicholson, T.L., Brockmeier, S.L., Loving, C.L., Register, K.B., Kehrli, Jr., M.E., Stibitz, S.E., Shore, S.M. 2012. Phenotypic modulation of the virulent Bvg phase is not required for pathogenesis and transmission of Bordetella bronchiseptica in swine. Infection and Immunity. 80(3):1025-1036.
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Swine MRSA isolates form robust biofilms
- (Abstract Only)
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Nicholson, T.L. 2011. Swine MRSA isolates form robust biofilms [abstract]. Conference of Research Workers in Animal Diseases. Paper No. 99.
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Sequence and virulence comparison of four North American isolates of porcine reproductive and respiratory syndrome virus
- (Abstract Only)
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Brockmeier, S.L., Loving, C.L., Miller, L.C., Vorwald, A.C., Kehrli, Jr., M.E., Baker, R.B., Nicholson, T.L., Lager, K.M., Faaberg, K.S. 2011. Sequence and virulence comparison of four North American isolates of porcine reproductive and respiratory syndrome virus. Conference of Research Workers in Diseases. Paper No. 174. p. 171.
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Fulminant sepsis is a cardinal sign of HP-PRRSV in pigs
- (Abstract Only)
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Lager, K.M., Faaberg, K.S., Guo, B., Brockmeier, S.L., Henningson, J.N., Schlink, S.N., Miller, L.C., Kappes, M.A., Kehrli, Jr., M.E., Nicholson, T.L., Yang, H.-C. 2011. Fulminant sepsis is a cardinal sign of HP-PRRSV in pigs [abstract]. 2011 International PRRS Symposium. Paper No. 60. page 77.
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Comparison of the pathogenicity of Chinese and low virulent US porcine reproductive and respiratory syndrome viruses
- (Abstract Only)
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Henningson, J.N., Faaberg, K.S., Guo, B., Schlink, S.N., Miller, L.C., Kappes, M.A., Kehrli, Jr., M.E., Brockmeier, S.L., Nicholson, T.L., Vorwald, A.C., Lager, K.M. 2011. Comparison of the pathogenicity of Chinese and low virulent US porcine reproductive and respiratory syndrome viruses [abstract]. American College of Veterinary Pathologists. Paper No. 164. Veterinary Pathology. 48(6):E30.
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Bordetellosis
- (Book / Chapter)
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Brockmeier, S.L., Register, K.B., Nicholson, T.L., Loving, C.L. 2012. Bordetellosis. In: Zimmerman, J., Karriker, L., Ramirez, A., Schwartz, K., Stevenson, G., editors.Diseases of Swine. 10th edition. Ames, IA: Iowa State University Press. pp. 670-679.
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HP-PRRSV challenge of 4 and 10-week-old pigs
- (Proceedings)
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Lager, K.M., Faaberg, K.S., Guo, B., Brockmeier, S., Henningson, J.N., Schlink, S.N., Miller, L.C., Kappes, M.A., Kehrli, Jr., M.E., Loving, C.L., Nicholson, T.L., Yang, H.C. 2011. HP-PRRSV challenge of 4 and 10-week-old pigs. In: Proceedings of the 5th Asian PRRSpective Symposium, May 10, 2011, Bangkok, Thailand. 6 pages.
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Porcine TLR3 characterization and expression in response to influenza virus and Bordetella bronchiseptica
- (Peer Reviewed Journal)
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Sacco, R.E., Nicholson, T.L., Waters, T.E., Brockmeier, S. 2011. Porcine TLR3 characterization and expression in response to influenza virus and Bordetella bronchiseptica. Veterinary Immunology and Immunopathology. 142(1-2):57-63.
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Contribution of Bordetella bronchiseptica Type III secretion system to respiratory disease in swine
- (Abstract Only)
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Brockmeier, S., Nicholson, T.L., Loving, C.L., Register, K.B. 2011. Contribution of Bordetella bronchiseptica type III secretion system to respiratory disease in swine [abstract]. American Society for Microbiology 2011 Annual Meeting. Abstract No. 1494.
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Utility of a Panviral Microarray for Detection of Swine Respiratory Viruses in Clinical Samples
- (Peer Reviewed Journal)
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Nicholson, T.L., Kukielka, D., Vincent, A.L., Brockmeier, S.L., Miller, L.C., Faaberg, K.S. 2011. Utility of a panviral microarray for detection of swine respiratory viruses in clinical samples. Journal of Clinical Microbiology. 49(4):1542-1548.
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Use of an Avirulent Isolate of Haemophilus parasuis as a Vaccine
- (Abstract Only)
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Brockmeier, S., Register, K.B., Loving, C.L., Nicholson, T.L. 2010. Use of an avirulent Isolate of Haemophilus parasuis as a vaccine. 45th US-Japan Cooperative Program in Natural Resources Panel of Animal and Avian Health Meeting. p 14.
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Evaluation of the Specificity of BP3385 for Bordetella pertussis
- (Peer Reviewed Journal)
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Register, K.B., Nicholson, T.L., Guthrie, J.L. 2010. Evaluation of the Specificity of BP3385 for Bordetella pertussis. Journal of Clinical Microbiology. 48(9):3334-3337.
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Influenza Virus Coinfection with Bordetella bronchiseptica Enhances Bacterial Colonization and Host Responses Exacerbating Pulmonary Lesions
- (Peer Reviewed Journal)
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Loving, C.L., Brockmeier, S.L., Vincent, A.L., Palmer, M.V., Sacco, R.E., Nicholson, T.L. 2010. Influenza Virus Coinfection with Bordetella bronchiseptica Enhances Bacterial Colonization and Host Responses Exacerbating Pulmonary Lesions. Microbial Pathogenesis. 49(5):237-245.
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Prior Colonization with an Avirulent Haemophilus parasuis Isolate Prevents Disease from a Subsequent Virulent Challenge with a Heterologous Isolate
- (Proceedings)
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Brockmeier, S., Loving, C.L., Mullins, M., Register, K.B., Nicholson, T.L. Prior Colonization with an Avirulent Haemophilus parasuis Isolate Prevents Disease from a Subsequent Virulent Challenge with a Heterologous Isolate. In: Proceedings of the Pig Veterinary Society International Congress, July 18-21, Vancouver, Canada. p. 192.
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Contribution of the Bordetella Bps Polysaccharide to Biofilm Formation and Respiratory Disease in Swine
- (Abstract Only)
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Nicholson, T.L., Brockmeier, S., Loving, C.L., Lu, H., Sloan, G.P., Deora, R. 2010. Contribution of the Bordetella Bps Polysaccharide to Biofilm Formation and Respiratory Disease in Swine [abstract]. American Society for Microbiology. p. 123.
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Utility of a Panviral Microarray for Detection of Swine Respiratory Viruses in Clinical Samples
- (Abstract Only)
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Nicholson, T.L., Kukielka, D., Wang, D., Faaberg, K.S. 2009. Detection Limits of PRRSV and SIV Using Pan Viral Microarray [abstract]. 45th Meeting of the United States-Japan Cooperative Program in Natural Resources Panel of Animal and Avian Health, December 2-4, 2009, Tokyo, Japan. p. 21.
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Swine influenza virus co-infection with Bordetella bronchiseptica enhances bacterial colonization and host immune responses exacerbating pulmonary lesions
- (Abstract Only)
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Loving, C.L., Brockmeier, S.L., Vincent, A.L., Palmer, M.V., Sacco, R.E., Nicholson, T.L. 2010. Swine influenza virus co-infection with Bordetella bronchiseptica enhances bacterial colonization and host immune responses exacerbating pulmonary lesions [abstract]. Conference Research Workers Disease Meeting. Paper No. 130.
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Virulence and Genome Evolution of Bordetella bronchiseptica
- (Abstract Only)
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Studies of pathogenesis, transmission, heterologous protection, and genomics of four isolates of Haemophilus parasuis
- (Abstract Only)
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Brockmeier, S., Loving, C.L., Register, K.B., Nicholson, T.L., Bayles, D.O., Phillips, G.J. 2009. Studies of pathogenesis, transmission, heterologous protection, and genomics of four isolates of Haemophilus parasuis [abstract]. 2009 Conference of Research Workers in Diseases. Abstract No. 15, p. 118.
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Studies of Pathogenesis, Transmission, and Heterologous Protection of Four Isolates of Haemophilus parasuis in a Highly Susceptible Swine Population
- (Abstract Only)
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Brockmeier, S., Loving, C.L., Register, K.B., Nicholson, T.L., Bayles, D.O., Phillips, G.J. 2010. Studies of pathogenesis, transmission, and heterologous protection of four isolates of Haemophilus parasuis in a highly susceptible swine population [abstract]. 2010 American Association of Swine Veterinarians Annual Meeting. p. 127-129.
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Microarray and functional analysis of growth-phase dependent gene regulation in Bordetella bronchiseptica
- (Peer Reviewed Journal)
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Nicholson, T.L., Buboltz, A.M., Harvill, E.T., Brockmeier, S.L. 2009. Microarray and Functional Analysis of Growth-Phase Dependent Gene Regulation in Bordetella bronchiseptica. Infection and Immunity. 77(10):4221-4231.
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Characterization and comparative analysis of the genes encoding Haemophilus parasuis outer membrane proteins P2 and P5
- (Peer Reviewed Journal)
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Mullins, M.A., Register, K.B., Bayles, D.O., Loving, C.L., Nicholson, T.L., Brockmeier, S.L., Dyer, D.W., Phillips, G.J. 2009. Characterization and Comparative Analysis of the Genes Encoding Haemophilus parasuis Outer Membrane Proteins P2 and P5. Journal of Bacteriology. 191(19):5988-6002.
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Enhanced Type III Secretion System activity contributes to the increased virulence of a Bordetella bronchiseptica lineage
- (Peer Reviewed Journal)
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Buboltz, A.M., Nicholson, T.L., Weyrich, L.S., Harvill, E.T. 2009. Role of the Type III Secretion System in a Hypervirulent Lineage of Bordetella bronchiseptica. Infection and Immunity. 77(9):3969-3977.
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Evidence for horizontal gene transfer of two antigenically distinct O antigens in Bordetella bronchiseptica
- (Peer Reviewed Journal)
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Buboltz, A., Nicholson, T.L., Karanikas, A., Preston, A., Harvill, E. 2009. Evidence for horizontal gene transfer of two antigenically distinct O antigens in Bordetella bronchiseptica. Infection and Immunity. 77(8):3249-3257.
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Comparative Genomic Hybridization Suggests a Unique Genetic Basis for Virulence of Bordetella hinzii
- (Abstract Only)
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Register, K.B., Nicholson, T.L. 2009. Comparative genomic hybridization suggests a unique genetic basis for virulence of Bordetella hinzii [abstract]. 109th American Society for Microbiology General Meeting. Poster No. Z-038.
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Identification and Comparative Analysis of Genes Encoding Outer Membrane Proteins P2 and P5 in Haemophilus parsuis
- (Abstract Only)
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Mullins, M.A., Register, K.B., Bayles, D.O., Loving, C.L., Nicholson, T.L., Brockmeier, S.L., Dyer, D.W., Phillips, G.J. 2009. Identification and comparative analysis of genes encoding outer membrane proteins P2 and P5 in Haemophilus parsuis [abstract]. 109th American Society for Microbiology General Meeting. Poster No. Z-034.
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Contribution of Bordetella bronchiseptica Filamentous Hemagglutinin and Pertactin to Respiratory Disease in Swine
- (Peer Reviewed Journal)
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Nicholson, T.L., Brockmeier, S., Loving, C.L. 2009. Contribution of Bordetella bronchiseptica Filamentous Hemagglutinin and Pertactin to Respiratory Disease in Swine. Infection and Immunity. 77(5):2136-2146.
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Replacement of adenylate cyclase toxin in a lineage of Bordetella bronchiseptica
- (Peer Reviewed Journal)
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Buboltz, A.M., Nicholson, T.L., Parette, M.R., Hester, S.E., Parkhill, J., Harvill, E. 2008. Replacement of adenylate cyclase toxin in a lineage of Bordetella bronchiseptica. Journal of Bacteriology. 190(15):5502-5511.
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Investigating the porcine immune reponse to Haemophilus parasuis
- (Abstract Only)
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Early Induction of Cytokines in Pigs Coinfected with Swine Influenza Virus and Bordetella bronchiseptica
- (Proceedings)
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Brockmeier, S., Vincent, A.L., Loving, C.L., Nicholson, T.L., Sacco, R.E. 2008. Early Induction of Cytokines in Pigs Coinfected with Swine Influenza Virus and Bordetella bronchiseptica. In: Proceedings of the 20th International Pig Veterinary Society Congress, June 22-26, 2008, Durban, South Africa. 1:10.
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Bordetella bronchiseptica Bvg Phase-Dependent Contribution to Colonization, Transmission, and Immune Responses in Pigs
- (Abstract Only)
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Loving, C.L., Nicholson, T.L., Brockmeier, S. 2008. Bordetella bronchiseptica Bvg Phase-Dependent Contribution to Colonization, Transmission, and Immune Responses in Pigs [abstract]. American Society for Microbiology Meeting, June 2-4, 2008, Boston, Massachusetts. 2008 CDROM.
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Contribution of Bordetella bronchiseptica Filamentous Hemagglutinin and Pertactin to Respiratory Disease in Swine
- (Abstract Only)
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Nicholson, T.L., Brockmeier, S., Loving, C.L. 2008. Contribution of Bordetella bronchiseptica Filamentous Hemagglutinin and Pertactin to Respiratory Disease in Swine [abstract]. American Society for Microbiology Meeting, June 2-4, 2008, Boston, Massachusetts. 2008 CDROM.
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Early Induction of Cytokines in Pigs Coinfected with Swine Influenza Virus and Bordetella bronchiseptica
- (Abstract Only)
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Brockmeier, S., Loving, C.L., Nicholson, T.L., Vincent, A.L., Sacco, R.E. 2008. Early Induction of Cytokines in Pigs Coinfected with Swine Influenza Virus and Bordetella bronchiseptica [abstract]. American Society for Microbiology Meeting, June 2-4, 2008, Boston, Massachusetts. 2008 CDROM.
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Replacement of Adenylate Cyclase Toxin in a Prominent Lineage of Bordetella bronchiseptica
- (Proceedings)
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Buboltz, A.M., Nicholson, T.L., Parette, M.R., Hester, S.E., Parkhill, J., Harvill, E.T. 2008. Replacement of Adenylate Cyclase Toxin in a Prominent Lineage of Bordetella bronchiseptica. Keystone Symposium Molecular Evolution as a Driving Force in Infectious Disease, April 8-13, 2008, Breckenridge, Colorado. p. 16.
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Coinfection of Pigs with Swine Influenza Virus and Bordetella bronchiseptica
- (Abstract Only)
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Brockmeier, S., Vincent, A.L., Nicholson, T.L., Sacco, R.E., Palmer, M.V. 2007. Coinfection of Pigs with Swine Influenza Virus and Bordetella bronchiseptica [abstract]. In: United States Japan Natural Resources Animal and Avian Health Panel, December 5, 2007, Tsukuba, Japan. p. 25.
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Growth Phase dependent gene regulation in Bordetella bronchiseptica
- (Abstract Only)
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Coinfection of pigs with Porcine Respiratory Coronavirus and Bordetella bronchisphica
- (Peer Reviewed Journal)
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Brockmeier, S., Loving, C.L., Nicholson, T.L., Palmer, M.V. 2008. Coinfection of pigs with Porcine Respiratory Coronavirus and Bordetella bronchisphica. Veterinary Microbiology. 128(1-2):36-47.
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Misidentification of Bordetella bronchiseptica as Bordetella pertussis using a Newly Described RT-PCR Targeting the Pertactin Gene
- (Peer Reviewed Journal)
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Register, K.B., Nicholson, T.L. 2007. Misidentification of Bordetella bronchiseptica as Bordetella pertussis using a newly described RT-PCR targeting the pertactin gene. Journal of Medical Microbiology. 56:1608-1610.
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Coinfection with Swine Influenza Virus and Bordetella bronchiseptica in Pigs
- (Abstract Only)
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Brockmeier, S., Vincent, A.L., Sacco, R.E., Nicholson, T.L., Palmer, M.V. 2007. Coinfection with Swine Influenza Virus and Bordetella bronchiseptica in Pigs [abstract]. American Society for Microbiology Meeting, May 21-25,2007, Toronto, Canada. 2007 CD-ROM.
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MICROARRAY - BASED APPROACH FOR GENOME-WIDE SURVEY OF NUCLEOTIDE POLYMORPHISMS
- (Book / Chapter)
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Brunelle, B.W., Nicholson, T.L. 2007. Microarray - based approach for genome-wide survey of nucleotide polymorphisms. In: Bergman, Nicholas H., editor. Methods in Molecular Biology. Totowa, NJ: Humana Press. p. 267-280.
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Construction and validation of a first-generation long-oligonulceotide microarray by transcriptional of the Bordetella bronchiseptica Bvg regulon
- (Peer Reviewed Journal)
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Nicholson, T.L. 2007. Construction and validation of a first-generation long-oligonulceotide microarray by transcriptional of the Bordetella bronchiseptica Bvg regulon. Biomed Central (BMC) Genomics. 8(1):220.
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Expression Profiling of Bordetella Bronchiseptica Responses to Temperature Using a Long-Oligonucleotide Microarray
- (Abstract Only)
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Nicholson, T.L., Brockmeier, S., Register, K.B. 2006. Expression Profiling of Bordetella Bronchiseptica Responses to Temperature Using a Long-Oligonucleotide Microarray [abstract]. United States-Japan Cooperative Program in Natural Resources. p. 18.
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Loss of Adenylate Cyclase Tonxin among closely related B. bronchiseptica strains
- (Abstract Only)
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Buboltz, A., Nicholson, T.L., Harvill, E. 2006. Loss of Adenylate Cyclase Tonxin among closely related B. bronchiseptica strains [abstract]. Eighth International Symposium: Saga of the Genus Bordetella, November 7-10, 2006, Pasteur, Paris. p. 26.
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COINFECTION WITH PORCINE RESPIRATORY CORONAVIRUS AND BORDETELLA BRONCHISEPTICA IN PIGS
- (Abstract Only)
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Brockmeier, S., Loving, C.L., Nicholson, T.L., Palmer, M.V. 2005. Coinfection with porcine respiratory coronavirus and bordetella bronchiseptica in pigs. American Society for Microbiology. Z016, p. 614.
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EXPRESSION PROFILING OF BORDETELLA BRONCHISEPTICA RESPONSES TO TEMPERATURE USING A LONG-OLIGONUCLEOTIDE MICROARRAY
- (Abstract Only)
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Nicholson, T.L., Brockmeier, S., Register, K.B. 2005. Expression profiling of bordetella bronchiseptica responses to temperature using a long-oligonucleotide microarray. American Society for Microbiology. D118, p. 218.
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EXPRESSION PROFILING OF BORDETELLA BRONCHISEPTICA RESPONSES TO TEMPERATURE USING A LONG-OLIGONUCLEOTIDE MICROARRAY
- (Abstract Only)
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Nicholson, T.L., Brockmeier, S., Register, K.B. 2005. Expression profiling of Bordetella bronchiseptica responses to temperature using a long-oligonucleotide microarray [abstract]. International Union of Microbiological Societies Proceedings/Abstracts. p. 18.
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