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ARS Home » Pacific West Area » Albany, California » Western Regional Research Center » Produce Safety and Microbiology Research » People & Locations » William Miller (Bill)

William Miller (Bill)
Produce Safety and Microbiology Research
Research Microbiologist

Phone: (510) 559-5992
Fax: (510) 559-6162
Room WAB200-D

USDA, ARS, PWA, WRRC-PSM
800 BUCHANAN STREET
ALBANY, CA 94710
Projects
Molecular Identification and Characterization of Bacterial and Viral Pathogens Associated with Foods
In-House Appropriated (D)
  Accession Number: 430420

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
A critical rebuttal of the proposed division of the genus Arcobacter into six genera using comparative genomic, phylogenetic, and phenotypic criteria Reprint Icon - (Peer Reviewed Journal)
On, S.L., Miller, W.G., Biggs, P., Cornelius, A., Vandamme, P. 2020. A critical rebuttal of the proposed division of the genus Arcobacter into six genera using comparative genomic, phylogenetic, and phenotypic criteria. Systematic and Applied Microbiology. 43(5):126108. https://doi.org/10.1016/j.syapm.2020.126108.
An emended description of Arcobacter anaerophilus Sasi Jyothsna et al. 2013: genomic and phenotypic insights Reprint Icon - (Peer Reviewed Journal)
On, S.L., Miller, W.G., Kelly, D., Vandamme, P. 2020. An emended description of Arcobacter anaerophilus Sasi Jyothsna et al. 2013: genomic and phenotypic insights. International Journal of Systematic and Evolutionary Microbiology. 70(6):3921-3923. https://doi.org/10.1099/ijsem.0.004214.
Complete genome sequencing of four Arcobacter species reveals a diverse suite of mobile elements Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2020. Complete genome sequencing of four Arcobacter species reveals a diverse suite of mobile elements. Genome Biology and Evolution. 12(2):3850–3856. https://doi.org/10.1093/gbe/evaa014.
Antimicrobial resistance patterns and molecular resistance markers of Campylobacter jejuni isolates from human diarrheal cases Reprint Icon - (Peer Reviewed Journal)
Elhadidy, M., Ali, M.M., El-Shibiny, A., Miller, W.G., Elkhatib, W.F., Botteldoorn, N., Dierick, K. 2020. Antimicrobial resistance patterns and molecular resistance markers of Campylobacter jejuni isolates from human diarrheal cases. PLoS One. 15(1):e0227833. https://doi.org/10.1371/journal.pone.0227833.
Campylobacter abundance in breastfed infants and identification of a new species in the global enterics multicenter study Reprint Icon - (Peer Reviewed Journal)
Bian, X., Garber, J.M., Cooper, K.K., Huynh, S., Jones, J., Mills, M., Rafala, D., Nasarin, D., Kotloff, K.L., Parker, C., Tennant, S.M., Miller, W.G., Szymanski, C.M. 2020. Campylobacter abundance in breastfed infants and identification of a new species in the global enterics multicenter study. mSphere. 5(1):e00735-19. https://doi.org/10.1128/mSphere.00735-19.
Complete genome sequences of the Campylobacter fetus subsp. venerealis, Campylobacter lari subsp. concheus, Campylobacter sputorum bv. sputorum, and Campylobacter volucris Type Strains Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Yee, E. 2019. Complete genome sequences of the Campylobacter fetus subsp. venerealis, Campylobacter lari subsp. concheus, Campylobacter sputorum bv. sputorum, and Campylobacter volucris Type Strains. Microbiology Resource Announcements. 8(45):e01157-19. https://doi.org/10.1128/MRA.01157-19.
Complete genome sequence of the Arcobacter canalis type strain LMG 29148 Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Chapman, M.H. 2019. Complete genome sequence of the Arcobacter canalis type strain LMG 29148. Microbiology Resource Announcements. 8(44):e01156-19. https://doi.org/10.1128/MRA.01156-19.
Campylobacter armoricus sp. nov., a novel member of the Campylobacter lari group isolated from surface water and stools from humans with enteric infection Reprint Icon - (Peer Reviewed Journal)
Boukerb, A.M., Penny, C., Serghine, J., Walczak, C., Cauchie, H., Miller, W.G., Losch, S., Ragimbeau, C., Mossong, J., Megraud, F., Lehours, P., Benejat, L., Gourmelon, M. 2019. Campylobacter armoricus sp. nov., a novel member of the Campylobacter lari group isolated from surface water and stools from humans with enteric infection. International Journal of Systematic and Evolutionary Microbiology. 69(12):3969-3979. https://doi.org/10.1099/ijsem.0.003836.
Strain-specific differences in survival of Campylobacter spp. in naturally-contaminated turkey feces and water Reprint Icon - (Peer Reviewed Journal)
Good, L., Miller, W.G., Niedermeyer, J., Osborne, J., Siletzky, R.M., Carver, D., Kathariou, S. 2019. Strain-specific differences in survival of Campylobacter spp. in naturally-contaminated turkey feces and water. Applied and Environmental Microbiology. 85:e01579-19. https://doi.org/10.1128/AEM.01579-19.
Arcobacter cryaerophilus isolated from New Zealand mussels harbor a putative virulence plasmid Reprint Icon - (Peer Reviewed Journal)
On, S.L., Althus, D., Miller, W.G., Lizamore, D., Wong, S.G., Mathai, A.J., Chelikani, V., Carter, G. 2019. Arcobacter cryaerophilus isolated from New Zealand mussels harbor a putative virulence plasmid. Frontiers in Microbiology. 10:1802. https://doi.org/10.3389/fmicb.2019.01802.
Comparative genomics and genome biology of Campylobacter showae Reprint Icon - (Peer Reviewed Journal)
Hsu, T., Gemmell, M.R., Franzosa, E., Berry, S., Mukhopadhya, I., Hansen, R., Michaud, M., Nielsen, H., Miller, W.G., Nielsen, H., Bajaj-Elliott, M., Huttenhower, C., Garrett, W.S., Hold, G.L. 2019. Comparative genomics and genome biology of Campylobacter showae. Emerging Microbes & Infections. 8(1):827-840. https://doi.org/10.1080/22221751.2019.1622455.
Complete genome sequences of three Shiga toxin-producing Escherichia coli O111:H8 strains exhibiting an aggregation phenotype Reprint Icon - (Peer Reviewed Journal)
Parker, C., Huynh, S., Bono, J.L., Miller, W.G., Cooley, M.B., Brandl, M. 2019. Complete genome sequences of three Shiga toxin-producing Escherichia coli O111:H8 strains exhibiting an aggregation phenotype. Microbiology Resource Announcements. 8(1):e01335-18. https://doi.org/10.1128/MRA.01335-18.
Complete genome sequences of the Arcobacter cryaerophilus strains ATCC 43158T and ATCC 49615 Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequences of the Arcobacter cryaerophilus strains ATCC 43158T and ATCC 49615. Microbiology Resource Announcements. 7(20):e01463-18. https://doi.org/10.1128/MRA.01463-18.
Molecular epidemiology and antimicrobial resistance mechanisms of Campylobacter coli from diarrheal patients and broiler carcasses in Belgium Reprint Icon - (Peer Reviewed Journal)
Elhadidy, M., Miller, W.G., Arguello, H., Álvarez-Ordóñez, A., Dierick, K., Botteldoorn, N. 2018. Molecular epidemiology and antimicrobial resistance mechanisms of Campylobacter coli from diarrheal patients and broiler carcasses in Belgium. Transboundary and Emerging Diseases. 66:463-475. https://doi.org/10.1111/tbed.13046.
Complete genome sequence of the Arcobacter skirrowii type strain LMG 6621 Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Yee, E. 2018. Complete genome sequence of the Arcobacter skirrowii type strain LMG 6621. Microbiology Resource Announcements. 7(17):e01308-18. https://doi.org/10.1128/MRA.01308-18.
Complete genome sequence of the Arcobacter suis type strain LMG 26152 Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequence of the Arcobacter suis type strain LMG 26152. Microbiology Resource Announcements. 7(17):e01307-18. https://doi.org/10.1128/MRA.01307-18.
Complete genome sequence of the Arcobacter marinus type strain JCM 15502 Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Huynh, S., Parker, C. 2018. Complete genome sequence of the Arcobacter marinus type strain JCM 15502. Microbiology Resource Announcements. 7(16):e01269-18. https://doi.org/10.1128/MRA.01269-18.
Complete genome sequence of the Arcobacter ellisii type strain LMG 26155 Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequence of the Arcobacter ellisii type strain LMG 26155. Microbiology Resource Announcements. 7(16):e01268-18. https://doi.org/10.1128/MRA.01268-18.
Complete genome sequence of the Arcobacter molluscorum type strain LMG 25693 Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequence of the Arcobacter molluscorum type strain LMG 25693. Microbiology Resource Announcements. 7(16):e01293-18. https://doi.org/10.1128/MRA.01293-18.
Complete genome sequence of the Arcobacter halophilus type strain CCUG 53805 Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequence of the Arcobacter halophilus type strain CCUG 53805. Microbiology Resource Announcements. 7(14):e01077-18. https://doi.org/10.1128/MRA.01077-18.
Complete genome sequence of the Arcobacter trophiarum type strain LMG 25534 Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Yee, E. 2018. Complete genome sequence of the Arcobacter trophiarum type strain LMG 25534. Microbiology Resource Announcements. 7(13):e01110-18. https://doi.org/10.1128/MRA.01110-18.
Relation between broiler and human C. jejuni strains isolated in Belgium from 2011 to 2013 Reprint Icon - (Peer Reviewed Journal)
Duarte, A., Botteldoorn, N., Miller, W.G., Coucke, W., Martiny, D., Hallin, M., Seliwiorstow, T., De Zutter, L., Uyttendaele, M., Vandenberg, O., Dierick, K. 2018. Relation between broiler and human C. jejuni strains isolated in Belgium from 2011 to 2013. Journal of Applied Microbiology. 126:277-287. https://doi.org/10.1111/jam.14132.
Complete genome sequence of the Arcobacter bivalviorum type strain LMG 26154 Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequence of the Arcobacter bivalviorum type strain LMG 26154. Microbiology Resource Announcements. 7(12):e01076-18. https://doi.org/10.1128/MRA.01076-18.
Complete genome sequence of the Arcobacter mytili type strain LMG 24559 Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2018. Complete genome sequence of the Arcobacter mytili type strain LMG 24559. Microbiology Resource Announcements. 7(11):e01078-18. https://doi.org/10.1128/MRA.01078-18.
Draft genome sequences of nine Campylobacter hyointestinalis subsp. lawsonii strains Reprint Icon - (Peer Reviewed Journal)
Bian, X., Huynh, S., Chapman, M.H., Szymanski, C., Parker, C., Miller, W.G. 2018. Draft genome sequences of nine Campylobacter hyointestinalis subsp. lawsonii strains. Microbiology Resource Announcements. 7(10):e01016-18. https://doi.org/10.1128/MRA.01016-18.
Complete genome sequence of Acinetobacter radioresistens strain LH6, a multidrug-resistant bacteriophage-propagating strain Reprint Icon - (Peer Reviewed Journal)
Crippen, C., Huynh, S., Miller, W.G., Parker, C., Szymanski, C.M. 2018. Complete genome sequence of Acinetobacter radioresistens strain LH6, a multidrug-resistant bacteriophage-propagating strain. Microbiology Resource Announcements. 7(5):e00929-18. https://doi.org/10.1128/MRA.00929-18.
Proximity to other commercial turkey farms affects colonization onset, genotypes and antimicrobial resistance profiles of Campylobacter in turkeys: suggestive evidence from a paired-farm model Reprint Icon - (Peer Reviewed Journal)
Niedermeyer, J., Ring, L., Miller, W.G., Genger, S., Parr Lindsey, C., Osborne, J., Kathariou, S. 2018. Proximity to other commercial turkey farms affects colonization onset, genotypes and antimicrobial resistance profiles of Campylobacter in turkeys: suggestive evidence from a paired-farm model. Applied and Environmental Microbiology. 84(18):e01212-18. https://doi.org/10.1128/AEM.01212-18.
Lack of evidence for erm(B) infiltration into Erythromycin-resistant Campylobacter coli and Campylobacter jejuni from commercial turkey production in eastern North Carolina: a major turkey-growing region in the United State Reprint Icon - (Peer Reviewed Journal)
Bolinger, H.K., Zhang, Q., Miller, W.G., Kathariou, S. 2018. Lack of evidence for erm(B) infiltration into Erythromycin-resistant Campylobacter coli and Campylobacter jejuni from commercial turkey production in eastern North Carolina: a major turkey-growing region in the United States. Foodborne Pathogens and Disease. 15(11):698-700. https://doi.org/10.1089/fpd.2018.2477.
Complete genome sequence of Campylobacter jejuni strain 12567 a livestock-associated clade representative Reprint Icon - (Peer Reviewed Journal)
Sacher, J.C., Yee, E., Szymanski, C.M., Miller, W.G. 2018. Complete genome sequence of Campylobacter jejuni strain 12567 a livestock-associated clade representative. Genome Announcements. 6(24):e00513-18. https://doi.org/10.1128/genomeA.00513-18.
Complete genome sequences of three Campylobacter jejuni phage-propagating strains Reprint Icon - (Peer Reviewed Journal)
Sacher, J.C., Yee, E., Szymanski, C.M., Miller, W.G. 2018. Complete genome sequences of three Campylobacter jejuni phage-propagating strains. Genome Announcements. 6(24):e00514-18. https://doi.org/10.1128/genomeA.00514-18.
Genetic basis and clonal population structure of antibiotic resistance in Campylobacter jejuni isolated from broiler carcasses in Belgium Reprint Icon - (Peer Reviewed Journal)
Elhadidy, M., Miller, W.G., Arguello, H., Álvarez-Ordóñez, A., Duarte, A., Dierick, K., Botteldoorn, N. 2018. Genetic basis and clonal population structure of antibiotic resistance in Campylobacter jejuni isolated from broiler carcasses in Belgium. Frontiers in Microbiology. 9:1014. https://doi.org/10.3389/fmicb.2018.01014.
Orthogonal typing methods identify genetic diversity among Belgian Campylobacter jejuni strains isolated over a decade from poultry and cases of sporadic human illness Reprint Icon - (Peer Reviewed Journal)
Elhadidy, M., Arguello, H., Álvarez-Ordóñez, A., Miller, W.G., Duarte, A., Martiny, D., Hallin, M., Vandenberg, O., Dierick, K., Botteldoorn, N. 2018. Orthogonal typing methods identify genetic diversity among Belgian Campylobacter jejuni strains isolated over a decade from poultry and cases of sporadic human illness. International Journal of Food Microbiology. 275:66-75. https://doi.org/10.1016/j.ijfoodmicro.2018.04.004.
International Committee on Systematics of Prokaryotes. Subcommittee on the taxonomy of Campylobacter and related bacteria. Minutes of the Meeting, August 27 2011, Vancouver, Canada. - (Proceedings)
International Committee on Systematics of Prokaryotes Subcommittee on the Taxonomy of Campylobacter and Related Bacteria. Minutes of the Meetings, September 15th and 18th 2013, Aberdeen, Scotland - (Proceedings)
Complete genome sequence of the hippuricase-positive Campylobacter avium type strain LMG 24591 Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Chapman, M.H., Yee, E., Revez, J., Bono, J.L., Rossi, M. 2017. Complete genome sequence of the hippuricase-positive Campylobacter avium type strain LMG 24591. Genome Announcements. 5(43):e01221-17. https://doi.org/10.1128/genomeA.01221-17.
Minimal standards for describing new species belonging to the families Campylobacteraceae and Helicobacteraceae: Campylobacter, Arcobacter, Helicobacter and Wolinella spp Reprint Icon - (Peer Reviewed Journal)
On, S.L., Miller, W.G., Houf, K., Fox, J.G., Vandamme, P. 2017. Minimal standards for describing new species belonging to the families Campylobacteraceae and Helicobacteraceae: Campylobacter, Arcobacter, Helicobacter and Wolinella spp. International Journal of Systematic and Evolutionary Microbiology. 67:5296-5311. doi:10.1099/ijsem.0.002255.
Comparative genomics of all three Campylobacter sputorum biovars and a novel cattle-associated C. sputorum clade - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Chapman, M.H., Bono, J.L. 2017. Comparative genomics of all three Campylobacter sputorum biovars and a novel cattle-associated C. sputorum clade. Genome Biology and Evolution. 9(6): 1513-1518.
Complete genome sequence of Campylobacter concisus ATCC 33237T and draft genome sequences for an additional eight well-characterized C. concisus strains Reprint Icon - (Peer Reviewed Journal)
Cornelius, A.J., Miller, W.G., Lastovica, A.J., On, S.L., French, N.P., Vandenberg, O., Biggs, P.J. 2017. Complete genome sequence of Campylobacter concisus ATCC 33237T and draft genome sequences for an additional eight well-characterized C. concisus strains. Genome Announcements. 5:e00711-17. https://doi.org/10.1128/genomeA.00711-17.
Comparative genomic analysis identifies a Campylobacter clade deficient in selenium metabolism - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Lopes, B.S., Chapman, M.H., Huynh, S., Bono, J.L., Parker, C., Strachan, N., Forbes, K.J. 2017. Comparative genomic analysis identifies a Campylobacter clade deficient in selenium metabolism. Genome Biology and Evolution. doi: 10.1093/gbe/evx093.
Complete genome sequence of the Campylobacter cuniculorum type strain LMG 24588 - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Revez, J., Bono, J.L., Rossi, M. 2017. Complete genome sequence of the Campylobacter cuniculorum type strain LMG 24588. Genome Announcements. 5:e00543-17.
Complete genome sequence of the Campylobacter helveticus type strain ATCC 51209T - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Bono, J.L. 2017. Complete genome sequence of the Campylobacter helveticus type strain ATCC 51209T. Genome Announcements. 5(21): e00398-17.
Campylobacter pinnipediorum sp. nov., isolated from pinnipeds, comprising Campylobacter pinnipediorum subsp. pinnipediorum subsp. nov. and Campylobacter pinnipediorum subsp. caledonicus subsp. nov. - (Peer Reviewed Journal)
Gilbert, M.J., Miller, W.G., St. Leger, J., Chapman, M.H., Timmerman, A.J., Foster, G., Wagenaar, J.A. 2017. Campylobacter pinnipediorum sp. nov., isolated from pinnipeds, comprising Campylobacter pinnipediorum subsp. pinnipediorum subsp. nov. and Campylobacter pinnipediorum subsp. caledonicus subsp. nov.. International Journal of Systematic and Evolutionary Microbiology. doi:10.1099/ijemo.001894.
Complete genome sequences of multidrug-resistant Campylobacter jejuni 14980A (turkey feces) and Campylobacter coli 14983A (housefly from turkey farm), harboring a novel gentamicin resistance mobile element. - (Peer Reviewed Journal)
Miller, W.G., Huynh, S., Parker, C., Neidermayer, J., Kathariou, S. 2016. Complete genome sequences of multidrug-resistant Campylobacter jejuni 14980A (turkey feces) and Campylobacter coli 14983A (housefly from turkey farm), harboring a novel gentamicin resistance mobile element. Genome Announcements. 4(5):e01175-16. doi:10.1128/genomeA.01175-16.
Comparative genomics of Campylobacter iguaniorum to unravel genetic regions associated with reptilian hosts - (Peer Reviewed Journal)
Gilbert, M., Miller, W.G., Yee, E., Kik, M., Zomer, A., Wagenaar, J., Duim, B. 2016. Comparative genomics of Campylobacter iguaniorum to unravel genetic regions associated with reptilian hosts. Genome Biology and Evolution. Genome Biol Evol. 2016 Oct 5;8(9):3022-3029.
Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production - (Peer Reviewed Journal)
Van der Graff, L., Duim, B., Miller, W.G., Forbes, K.J., Wagenaar, J.A., Zomer, A. 2016. Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production. BMC Genomics. 17:713.
Novel plasmid conferring kanamycin and tetracycline resistance in turkey-derived Campylobacter jejuni strain 11601MD - (Peer Reviewed Journal)
Crespo, M., Altermann, E., Olson, J., Miller, W.G., Kathariou, S. 2016. Novel plasmid conferring kanamycin and tetracycline resistance in turkey-derived Campylobacter jejuni strain 11601MD. Plasmid Journal. doi: 10.1016/j.plasmid.2016.06.001.
Comparative genomics of Campylobacter fetus from reptiles and mammals reveals divergent evolution in host-associated lineages - (Peer Reviewed Journal)
Gilbert, M.J., Miller, W.G., Yee, E., Zomer, A., van der Graaf, L., Fitzgerald, C., Forbes, K.J., Meric, G., Sheppard, S.K., Wagenaar, J.A., Duim, B. 2016. Comparative genomics of Campylobacter fetus from reptiles and mammals reveals divergent evolution in host-associated lineages. Genome Biology and Evolution. 8(6):2006-2019.
Routes of transmission of Salmonella and Campylobacter in breeder turkeys - (Peer Reviewed Journal)
Crespo, M.D., Kathariou, S., Grimes, J.L., Cox Jr., N.A., Buhr, R.J., Frye, J.G., Miller, W.G., Jackson, C.R., Smith, D.P. 2016. Routes of transmission of Salmonella and Campylobacter in breeder turkeys. Journal of Applied Poultry Research. 25(4):591-609.
Complete genome sequence of the Campylobacter iguaniorum strain RM11343, isolated from an alpaca - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Huynh, S., Chapman, M.H., Parker, C. 2016. Complete genome sequence of the Campylobacter iguaniorum strain RM11343, isolated from an alpaca. Genome Announcements. 4(3):e00646-16.
Complete genome sequences of Campylobacter hyointestinalis subsp. hyointestinalis strain LMG9260 and Campylobacter hyointestinalis subsp. lawsonii strain LMG15993 - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Chapman, M.H. 2016. Complete genome sequences of Campylobacter hyointestinalis subsp. hyointestinalis strain LMG9260 and Campylobacter hyointestinalis subsp. lawsonii strain LMG15993. Genome Announcements. 4(4):e00665-16.
Discriminative power of Campylobacter phenotypic and genotypic typing methods. - (Peer Reviewed Journal)
Duarte, A., Seliwiorstow, T., Miller, W.G., De Zutter, L., Uyttendaele, M., Dierick, K., Botteldoorn, N. 2016. Discriminative power of Campylobacter phenotypic and genotypic typing methods. Journal of Microbiological Methods. 125:33-39.
Campylobacter fetus subspecies contain conserved type IV secretion systems on multiple genomic islands and plasmids - (Peer Reviewed Journal)
Van Der Graaf, L., Miller, W.G., Yee, E., Gorkiewicz, G., Forbes, K., Zomer, A.L., Wagenaar, J., Duim, B. 2016. Campylobacter fetus subspecies contain conserved type IV secretion systems on multiple genomic islands and plasmids. PLoS One. 11(4):e0152832..
The polymorphic aggregative phenotype of Shiga toxin-producing Escherichia coli O111 depends on rpoS and curli - (Peer Reviewed Journal)
Diodati, M.E., Bates, A.H., Miller, W.G., Carter, M.Q., Zhou, Y., Brandl, M. 2016. The polymorphic aggregative phenotype of Shiga toxin-producing Escherichia coli O111 depends on rpoS and curli. Applied and Environmental Microbiology. 82:1475–1485. doi: 10.1128/AEM.03935-15.
Complete genomic sequences of two outbreak strains of Salmonella enterica subsp. enterica serovar Thompson associated with cilantro - (Peer Reviewed Journal)
Parker, C., Huynh, S., Gorski, L.A., Cooper, K.K., Miller, W.G. 2015. Complete genomic sequences of two outbreak strains of Salmonella enterica subsp. enterica serovar Thompson associated with cilantro. Genome Announcements. 3(6):e01335-15.
Complete genomic sequences of Campylobacter jejuni strains RM3196 (233.94) and RM3197 (308.95) that were isolated from patients with Guillain-Barré Syndrome - (Peer Reviewed Journal)
Parker, C., Huynh, S., Heikema, A.P., Cooper, K.K., Miller, W.G. 2015. Complete genomic sequences of Campylobacter jejuni strains RM3196 (233.94) and RM3197 (308.95) that were isolated from patients with Guillain-Barré Syndrome. Genome Announcements. 3(6):e01312-15.
Complete genome sequence of the Campylobacter ureolyticus clinical isolate RIGS 9880 - (Peer Reviewed Journal)
Miller, W.G., Yee, E., On, S., Bono, J.L., Andersen, L.P. 2015. Complete genome sequence of the Campylobacter ureolyticus clinical isolate RIGS 9880. Genome Announcements. 3(6):e01291-15.
Complete genome sequence of Campylobacter gracilis ATCC 33236T - (Peer Reviewed Journal)
Miller, W.G., Yee, E. 2015. Complete genome sequence of Campylobacter gracilis ATCC 33236T. Genome Announcements. 3(6):e01087-15.
Campylobacter iguaniorum sp. nov., isolated from reptiles - (Peer Reviewed Journal)
Gilbert, M.J., Kik, M., Miller, W.G., Duim, B., Wagenaar, J.A. 2015. Campylobacter iguaniorum sp. nov., isolated from reptiles. International Journal of Systematic and Evolutionary Microbiology. 65(3):975-982.
Comparative genomics of the Campylobacter lari group - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Chapman, M.H., Smith, T.P., Bono, J.L., Huynh, S., Parker, C., Vandamme, P., Luong, K., Korlach, J. 2014. Comparative genomics of the Campylobacter lari group. Genome Biology and Evolution. doi: 10.1093/gbe/evu249.
Inconsistency of phenotypic and genomic characteristics of Campylobacter fetus subspecies requires re-evaluation of current diagnostics - (Peer Reviewed Journal)
Van Der Graaf, L., Miller, W.G., Yee, E., Rijnsburger, M., Wagenaar, J.A., Duim, B. 2014. Inconsistency of phenotypic and genomic characteristics of Campylobacter fetus subspecies requires re-evaluation of current diagnostics. Journal of Clinical Microbiology. 52(12):4183-4188.
Complete genome sequence of Campylobacter iguaniorum strain 1485ET, isolated from a bearded dragon (Pogona vitticeps) - (Peer Reviewed Journal)
Gilbert, M.J., Miller, W.G., Yee, E., Kik, M., Wagenaar, J.A., Duim, B. 2014. Complete genome sequence of Campylobacter iguaniorum strain 1485ET, isolated from a bearded dragon (Pogona vitticeps). Genome Announcements. 2(4):e00844-14. doi: 10.1128/genomeA.00844-14.
The complete genome sequence and annotation of a Campylobacter jejuni strain, MTVDSCj20, isolated from a naturally colonized farm-raised chicken - (Peer Reviewed Journal)
Taveirne, M.E., Dunham, D.T., Miller, W.G., Parker, C., Huynh, S., Dirita, V.J. 2014. The complete genome sequence and annotation of a Campylobacter jejuni strain, MTVDSCj20, isolated from a naturally colonized farm-raised chicken. Genome Announcements. 2(4):e00852-14. doi: 10.1128/genomeA.00852-14.
Description of Campylobacter fetus subsp. testudinum subsp. nov., isolated from humans and reptiles - (Peer Reviewed Journal)
Fitzgerald, C., Tu, Z., Patrick, M., Stiles, T., Lawson, A.J., Santovenia, M., Gilbert, M., Van Bergen, M., Joyce, K., Pruckler, J., Stroika, S., Duim, B., Miller, W.G., Loparev, V., Sinnige, J.C., Fields, P.I., Tauxe, R., Blaser, M.J., Wagenaar, J.A. 2014. Description of Campylobacter fetus subsp. testudinum subsp. nov., isolated from humans and reptiles. International Journal of Systematic and Evolutionary Microbiology. 64(9):2944-2948.
The microbiome structure and Campylobacter jejuni transcriptome in naturally-raised chickens - (Abstract Only)
Use of an improved atpA amplification and sequencing method to identify members of the Campylobacteraceae and Helicobacteraceae - (Peer Reviewed Journal)
Miller, W.G., Yee, E., Jolley, K.A., Chapman, M.H. 2014. Use of an improved atpA amplification and sequencing method to identify members of the Campylobacteraceae and Helicobacteraceae. Letters in Applied Microbiology. 58(6):582-590. DOI: 10.1111/lam.12228.
Divergent distribution of the sensor kinase CosS in non-thermophilic Campylobacter species and its functional incompatibility with the Campylobacter jejuni CosR - (Peer Reviewed Journal)
Hwang, S., Miller, W.G., Ryu, S., Jeon, B. 2014. Divergent distribution of the sensor kinase CosS in non-thermophilic Campylobacter species and its functional incompatibility with the Campylobacter jejuni CosR. PLoS One. 9(2):e89774.
The first closed genome sequence of Campylobacter fetus subsp. venerealis biovar intermedius - (Peer Reviewed Journal)
Van Der Graff, L., Miller, W.G., Yee, E., Bono, J.L., Rijnsburger, M., Campero, C., Wagenaar, J.A., Duim, B. 2014. The first closed genome sequence of Campylobacter fetus subsp. venerealis biovar intermedius. Genome Announcements. 2(1):e01246-13.
Biological roles of the O-methyl phosphoramidate capsule modification in Campylobacter jejuni - (Peer Reviewed Journal)
Van Alpen, L., Wenzel, C.Q., Richards, M., Fodor, C., Ashmus, R.A., Stahl, M., Karlyshev, A.V., Wren, B.W., Stintzi, A., Miller, W.G., Lowrey, T.L., Szymanski, C.M. 2014. Biological roles of the O-methyl phosphoramidate capsule modification in Campylobacter jejuni. PLoS One. 9(1):e87051.
Complete genome sequence of the clinical Campylobacter coli isolate 15-537360 - (Peer Reviewed Journal)
Pearson, B.M., Rokney, A., Crossman, L.C., Miller, W.G., Wain, J., Van Vliet, A.H. 2013. Complete genome sequence of the clinical Campylobacter coli isolate 15-537360. Genome Announcements. 1(6):e01056-13.
Complete genome sequence of Campylobacter fetus subsp. testudinum type strain 03-427T - (Peer Reviewed Journal)
Gilbert, M.J., Miller, W.G., Yee, E., Blaser, M.J., Wagenaar, J.A., Duim, B. 2013. Complete genome sequence of Campylobacter fetus subsp. testudinum type strain 03-427T. Genome Announcements. 1:e00900-13. DOI: 10.1128/genonmeA.00900-13.
Multi-omics approaches to deciphering a hypervirulent strain of Campylobacter jejuni - (Peer Reviewed Journal)
Wu, Z., Sahin, O., Shen, Z., Liu, P., Miller, W.G., Zhang, Q. 2013. Multi-omics approaches to deciphering a hypervirulent strain of Campylobacter jejuni. Genome Biology. 5(11):2217-2230.
The complete genome sequence of the Arcobacter butzleri cattle isolate 7h1h - (Peer Reviewed Journal)
Merga, J., Winstanley, C., Williams, N.J., Yee, E., Miller, W.G. 2013. The complete genome sequence of the Arcobacter butzleri cattle isolate 7h1h. Genome Announcements. 1(4):e00655-13.
The complete genome sequences of 65 Campylobacter jejuni and C. coli strains - (Abstract Only)
Evolution of campylobacter species in New Zealand ()
French, N., Yu, S., Biggs, P., Binney, B., Fearnhead, P., Holland, B., Fox, A., Grove-White, D., Miller, W.G., Muellner, P., Carter, P. 2014. Evolution of campylobacter species in New Zealand. Campylobacter Ecology and Evolution. In: Meric, G. and Sheppard, S., editors. Norfolk, UK: Caister Academic Press. p.221-240.
Exploring the diversity of Arcobacter spp. in cattle in the UK using MLST and whole genome sequencing - (Peer Reviewed Journal)
Merga, J.Y., Williams, N.J., Miller, W.G., Leatherbarrow, A.J., Bennett, M., Hall, N., Ashelford, K.E., Winstanley, C. 2013. Exploring the diversity of Arcobacter spp. in cattle in the UK using MLST and whole genome sequencing. PLoS One. 8(2):e55240. doi:10.1371/journal.pone.0055240.
Using MOMP typing as an epidemiological tool to investigate outbreaks caused by milkborne Campylobacter jejuni isolates in California Reprint Icon - (Peer Reviewed Journal)
Jay-Russell, M.T., Mandrell, R.E., Yuan, J., Bates, A.H., Manalac, R., Mohle-Boetani, J., Kimura, A., Lidgard, J., Miller, W.G. 2012. Using MOMP typing as an epidemiological tool to investigate outbreaks caused by milkborne Campylobacter jejuni isolates in California. Journal of Clinical Microbiology. 51(1):195-201.
Progressive genome-wide introgression in agricultural Campylobacter coli Reprint Icon - (Peer Reviewed Journal)
Sheppard, S.K., Didelot, X., Jolley, K.A., Darling, A.E., Kelly, D., Colles, F.M., Strachen, N.J., Ogden, I.D., Forbes, K.J., French, N., Carter, P., Miller, W.G. 2012. Progressive genome-wide introgression in agricultural Campylobacter coli. Proceedings of the National Academy of Sciences. 22:1051-1064.
Regulation of energy metabolism by the extracytoplasmic function (ECF) s factors of Arcobacter butzleri - (Peer Reviewed Journal)
Martinez-Malaxetxeba, I., Mutts, R., Parker, C., Miller, W.G., Huynh, S., Gaastra, W., Van Putten, J.P., Fernandez-Astorga, A., Wosten, M.M. 2012. Regulation of energy metabolism by the extracytoplasmic function (ECF) s factors of Arcobacter butzleri. PLoS One. doi%2F10.1371%2Fjournal.pone.0044796.
Diversity in the protein N-glycosylation pathways among campylobacter species - (Peer Reviewed Journal)
Nothaft, H., Scott, N.E., Vingradov, E., Liu, X., Hu, R., Li, J., Beadle, B., Fodor, C., Miller, W.G., Cordwell, S.J., Szymanski, C.M. 2012. Diversity in the protein N-glycosylation pathways among campylobacter species. Molecular and Cellular Proteomics. doi:10.1074/mcp.m112.021519.
Comprehensive detection and discrimination of campylobacter species using confocal micro-raman spectroscopy and multilocus sequence typing - (Peer Reviewed Journal)
Lu, X., Huang, Q., Miller, W.G., Aston, D., Xu, J., Xue, F., Zhang, H., Rasco, B., Wang, S., Konkel, M.E. 2012. Comprehensive detection and discrimination of campylobacter species using confocal micro-raman spectroscopy and multilocus sequence typing. Journal of Clinical Microbiology. doi:10.1128/JCM.01144-12.
Multilocus sequence typing (MLST) methods for the emerging Campylobacter species C. hyointestinalis, C. lanienae, C. sputorum, C. concisus and C. curvus Reprint Icon - (Peer Reviewed Journal)
Miller, W.G., Chapman, M.H., Yee, E., On, S.L., Mcnulty, D.K., Lastovica, A.J., Carroll, A.M., Mcnamara, E.B., Duffy, G., Mandrell, R.E. 2012. Multilocus sequence typing (MLST) methods for the emerging Campylobacter species C. hyointestinalis, C. lanienae, C. sputorum, C. concisus and C. curvus.. Frontiers in Cellular and Infection Microbiology. 10:3389/fcimb.2012.00045.
Isolation of Campylobacter from feral swine (Sus scrofa) on the ranch associated with the 2006 Escherichia coli O157:H7 spinach outbreak investigation in California Reprint Icon - (Peer Reviewed Journal)
Jay-Russell, M.J., Bates, A.H., Harden, L.A., Miller, W.G., Mandrell, R.E. 2012. Isolation of Campylobacter from feral swine (Sus scrofa) on the ranch associated with the 2006 Escherichia coli O157:H7 spinach outbreak investigation in California. Zoonoses and Public Health. 10.1111/j.1863-2378.2012.01465.x.
Evolutionary silence of the acid chaperone protein HdeB in enterohemorrhagic Escherichia coli O157:H7 Reprint Icon - (Peer Reviewed Journal)
Carter, M.Q., Louie, J.W., Fagerquist, C.K., Sultan, O., Miller, W.G., Mandrell, R.E. 2012. Evolutionary silence of the acid chaperone protein HdeB in enterohemorrhagic Escherichia coli O157:H7. Applied and Environmental Microbiology. 78:1004-1014.
Genomics and isolation of emerging CHRO species - (Proceedings)
Characterization of the extrachromosomal function (ECF) sigma factors of Arcobacter butzleri - (Abstract Only)
O-METHYL PHOSPHORAMIDATE MODIFICATIONS ON THE CAPSULAR POLYSACCHARIDE OF CAMPYLOBACTER JEJUNI ARE INVOLVED IN SERUM RESISTANCE, INFECTION, AND INSECTICIDAL ACTIVITY - (Abstract Only)
Hybrid speciation in agricultural Campylobacter coli - (Abstract Only)
A comparison of Arcobacter isolation methods and the diversity of Arcobacter spp. in Cheshire, UK.__________________________________________ - (Peer Reviewed Journal)
Sloane, J.Y., Leatherbarrow, A.J., Winstanley, C., Bennett, M., Hart, C.A., Miller, W.G., Williams, N. 2010. A comparison of Arcobacter isolation methods and the diversity of Arcobacter spp. in Cheshire, UK. Applied and Environmental Microbiology. 10.1128/AEM.01964-10.
Typing of Campylobacter jejuni and Campylobacter coli isolated from live broilers and retail broiler meat by flaA-RFLP, MSLT, PFGE, and REP-PCR. - (Peer Reviewed Journal)
Behringer, M., Miller, W.G., Oyarzabal, O.A. 2010. flaA-PCR, MLST, PFGE and Rep-PCR Typing of Campylobacter jejuni and Campylobacter coli isolated from live broilers and retail broiler meat. Journal of Microbiological Methods. 84(2011) 194-201.
Differences in Methylation at GATC sites in genomic DNA of Campylobacter coli from turkeys and swine - (Peer Reviewed Journal)
Wright, S., Wilson, S., Miller, W.G., Mandrell, R.E., Siletsky, R.M., Kathariou, S. 2010. Methylation at GATC sites in genomic DNA of Campylobacter coli from turkeys and swine. Applied and Environmental Microbiology. 76(21):7314-7317.
Rapid Identification of Protein Biomarkers of E. coli O157:H7 by MALDI-TOF-TOF Mass Spectrometry and Top-Down Proteomics - (Peer Reviewed Journal)
Fagerquist, C.K., Garbus, B.R., Miller, W.G., Williams, K.E., Yee, E., Bates, A.H., Boyle, S., Harden, L.A., Cooley, M.B., Mandrell, R.E. 2010. Rapid Identification of Protein Biomarkers of E. coli O157:H7 by MALDI-TOF-TOF Mass Spectrometry and Top-Down Proteomics. Analytical Chemistry. 82:2717-2725.
Comparative Genomics of the Genus Campylobacter: Analysis of All 24 Described Campylobacter Species. - (Abstract Only)
Arcobacter: An Opportunistic Human Foodborne Pathogen? ()
Wesley, I.V., Miller, W.G. 2010. Arcobacter: An Opportunistic Human Foodborne Pathogen? In: Scheld, W.M., Grayson, M.L., Hughes, J.M., editors. Emerging Infections 9. Washington, DC: American Society of Microbiology Press. p. 185-211.
The Complete Genome of the Human Clinical Isolate Campylobacter upsaliensis RM3195 ()
First multilocus sequence typing scheme for Arcobacter spp. - (Peer Reviewed Journal)
Miller, W.G., Wesley, I.V., On, S., Houf, K., Megraud, F., Wang, G., Yee, E., Srijan, A., Mason, C. 2009. First multilocus sequence typing scheme for Arcobacter spp.. BMC Microbiology. doi:10.1186/1471-2180-9-196
DNA identification and characterization of Campylobacter jejuni and Campylobacter coli isolated from cecal samples of chickens in Grenada - (Peer Reviewed Journal)
Analysis of the Pan Genome of Campylobacter jejuni Isolates Recovered from Poultry by Pulse-Field Gel Electrophoreis, MLST and rep-PCR Reveals Different Discriminatory Capabilities - (Peer Reviewed Journal)
Wilson, M.K., Lane, A.B., Law, B.F., Miller, W.G., Joens, L.A., Konkel, M.E., White, B.A. 2009. Analysis of the Pan Genome of Campylobacter jejuni Isolates Recovered from Poultry by Pulse-Field Gel Electrophoreis, MLST and rep-PCR Reveals Different Discriminatory Capabilities. Microbial Ecology. DOI 10, 1007/s00248-009-9571-3
Induction of Purple Sulfur Bacterial Growth in Dairy Wastewater Lagoons by Circulation - (Peer Reviewed Journal)
Mcgarvey, J.A., Miller, W.G., Lathrop, J.R., Silva, C.J., Bullard, G. 2009. Induction of Purple Sulfur Bacterial Growth in Dairy Wastewater Lagoons by Circulation. Letters in Applied Microbiology. 49:427-433.
Rapid Identification of E. coli O157:H7 by "Top-Down" Proteomics Using MALDI-TOF/TOF Mass Spectrometry - (Proceedings)
Fagerquist, C.K., Garbus, B.R., Williams, K.E., Bates, A.H., Boyle, S., Harden, L.A., Miller, W.G., Mandrell, R.E. 2009. Rapid Identification of E. coli O157:H7 by "Top-Down" Proteomics Using MALDI-TOF/TOF Mass Spectrometry.IN: Proceedings of the 57th American Society of Mass Spectrometry Conference, May 31-June 4, 2009, Philadelphia, PA. DVD:A091307.8125ver.1.pdf
Correlation between genotypic diversity, lipooligosaccharide gene locus class variation and Caco-2 invasion potential of Campylobacter jejuni from human and chicken meat origin: a contribution to virulotyping - (Peer Reviewed Journal)
Habib, I., Louwen, R., Uytendaele, M., Houf, K., Vandenberg, O., Nieuwenhuis, E.E., Miller, W.G., Vanbelkum, A., Dezutter, L. 2009. Correlation between genotypic diversity, lipooligosaccharide gene locus class variation and Caco-2 invasion potential of Campylobacter jejuni from human and chicken meat origin: a contribution to virulotyping. Applied and Environmental Microbiology. 75(13):4277-4288.
Clonal population structure and antimicrobial resistance of Campylobacter jejuni from chicken meat in Belgium - (Peer Reviewed Journal)
Habib, I., Miller, W.G., Uyttendaele, M., Houf, K., Dezutter, L. 2009. Clonal population structure and antimicrobial resistance of Campylobacter jejuni from chicken meat in Belgium. Applied and Environmental Microbiology. 75(13):4264-4272.
Examination of Campylobacter jejuni putative adhesins leads to the identification of a new protein, designated FlpA, required for chicken colonization - (Peer Reviewed Journal)
Flanagan, R.M., Neal-Mckinney, J.M., Dhillon, A.S., Miller, W.G., Konkle, M.E. 2009. Examination of Campylobacter jejuni putative adhesins leads to the identification of a new protein, designated FlpA, required for chicken colonization. Infection and Immunity. 77:2399-2407
Rapid Identification of E. coli O157:H7 by "Top-Down" Proteomics Using MALDI-TOF/TOF Mass Spectrometry - (Abstract Only)
Autoinducer-2 production in Campylobacter jejuni contributes to chicken colonization - (Peer Reviewed Journal)
Quinones, B., Miller, W.G., Bates, A.H., Mandrell, R.E. 2009. Autoinducer-2 production in Campylobacter jejuni contributes to chicken colonization. Applied and Environmental Microbiology. 75/1:281-285
The complete genome sequence and analysis of the human pathogen Campylobacter lari. - (Peer Reviewed Journal)
Miller, W.G., Wang, G., Binnewies, T.T., Parker, C. 2008. The complete genome sequence and analysis of the human pathogen Campylobacter lari. Foodborne Pathogens and Disease. 5(4):371-386.
Comparative genomic analysis of clinical strains of Campylobacter jejuni from South Africa - (Peer Reviewed Journal)
Quinones, B., Guilhabert, M.R., Miller, W.G., Mandrell, R.E., Lastovica, A.J., Parker, C. 2008. Comparative genomic analysis of clinical strains of Campylobacter jejuni from South Africa. PLoS One. 3(4)e2015_1-e2015_10
High Resolution Genotyping of Campylobacter Using PCR and High-Throughput Mass Spectrometry - (Peer Reviewed Journal)
Hannis, J., Manalili, S., Hall, T., Ranken, R., White, N., Sampath, R., Blyn, L., Ecker, D., Mandrell, R.E., Fagerquist, C.K., Bates, A.H., Miller, W.G., Hofstadler, S. 2008. High Resolution Genotyping of Campylobacter Using PCR and High-Throughput Mass Spectrometry. Journal of Clinical Microbiology.46(4) 1220-1225.
The complete genome sequence and analysis of the Epsilonproteobacterium Arcobacter butzleri. - (Peer Reviewed Journal)
Miller, W.G., Parker, C., Rubenfield, M., Mendz, G.L., Wosten, M.M., Ussery, D.W., Stolz, J.F., Binnewies, T.T., Hallin, P.F., Wang, G., Malek, J.A., Rogosin, A., Stanker, L.H., Mandrell, R.E. 2007. The complete genome sequence and analysis of the Epsilonproteobacterium Arcobacter butzleri. PLoS One. 2(12):e1358.
AI-2 signaling in Campylobacter jejuni and its contribution to chicken colonization - (Proceedings)
Oxygen requirement and tolerance of Campylobacter jejuni. - (Peer Reviewed Journal)
Kaakoush, N.O., Miller, W.G., De Reuse, H., Mendz, G.L. 2007. Oxygen requirement and tolerance of Campylobacter jejuni. Research in Microbiology. 158(8-9):644-650.
Composite sequence proteomic analysis of protein biomarkers of Campylobacter coli, C. lari and C. concisus for bacterial identification - (Peer Reviewed Journal)
Fagerquist, C.K., Yee, E., Miller, W.G. 2007. Composite sequence proteomic analysis of protein biomarkers of Campylobacter coli, C. lari and C. consisus for bacterial identification. The Analyst. 132(10):1010-1023.
Bacterial population dynamics in diary waste during aerobic and anaerobic treatment and subsequent storage. - (Peer Reviewed Journal)
Mcgarvey, J.A., Miller, W.G., Zhang, R., Ma, Y., Mitloehner, F. Bacterial population dynamics in diary waste during aerobic and anaerobic treatment and subsequent storage. Applied and Environmental Microbiology. 73:193-202
IDENTIFICATION OF DISULPHIDE REDUCTASES IN CAMPYLOBACTERALES: A BIOINFORMATICS INVESTIGATION - (Peer Reviewed Journal)
Kaakoush, N.O., Sterzenbach, T., Miller, W.G., Suerbaum, S., Mendz, G.L. 2007. Identification of disulphide reductases in campylobacterales. Antonie Van Leeuwenhoek. 92(4):429-441
Common Genomic Features of Campylobacter jejuni subsp. doylei Strains Distinguish Them from C. jejuni subsp. jejuni - (Peer Reviewed Journal)
Parker, C., Miller, W.G., Horn, S.T., Lastovica, A.J. 2007. Common Genomic Features of Campylobacter jejuni subsp. doylei Strains Distinguish Them from C. jejuni subsp. jejuni. BMC Microbiology. http://www.biomedcentral.com/1471-2180/7/50
Detection and Genotyping of Arcobacter and Campylobacter Isolates from Retail Chicken Samples by Use of DNA Oligonucleotide Arrays - (Peer Reviewed Journal)
Quinones, B., Parker, C., Janda Jr, J.M., Miller, W.G., Mandrell, R.E. 2007. Detection and Genotyping of Arcobacter and Campylobacter Isolates from Retail Chicken Samples by Use of DNA Oligonucleotide Arrays. Applied and Environmental Microbiology. 73(11)3645-3655
IDENTIFICATION OF GENOMIC DIFFERENCES BETWEEN CAMPYLOBACTER JEJUNI SUBSP. JEJUNI AND CAMPYLOBACTER JEJUNI SUBSP. DOYLEI AT THE NAP LOCUS LEADS TO THE DEVELOPMENT OF A C. JEJUNI SUBSPECIATION MULTIPLEX PCR METHOD - (Peer Reviewed Journal)
Miller, W.G., Parker, C., Heath, S., Lastovica, A. 2007. Identification of genomic differences between campylobacter jejuni subsp. jejuni and C. jejuni subsp. doylei at the nap locus leads to the development of a C. jejuni subspeciation multiplex pcr method. BioMed Central Microbiology. 7:11.
Clonal Population Structure and Specific Genotypes of Multi-drug Resistant Campylobacter coli from Turkeys. - (Peer Reviewed Journal)
D'Lima, C., Miller, 2007 W.G., Mandrell, R.E., Wright, S.L., Siletsky, R., Carver, D.K., Kathariou, S. Clonal Population Structure and Specific Genotypes of Multi-drug Resistant Campylobacter coli from Turkeys.. Applied and Environmental Microbiology. 73(7) 2156-2164
CAMPYLOBACTER INSULAENIGRAE ISOLATED FROM NORTHERN ELEPHANT SEALS (MIROUNGA ANGUSTIROSTRIS) IN CALIFORNIA - (Peer Reviewed Journal)
Stoddard, R.A., Miller, W.G., Foley, J.E., Lawrence, J., Gullard, F.M., Conrad, P.A., Byrne, B.A. 2007. Campylobacter insulaenigrae isolated from northern elephant seals (mirounga angustirostris) in california. Applied and Environmental Microbiology. 7(6)1729-1735
ASSOCIATION OF ERYTHROMYCIN SUSCEPTIBILITY AND ABSENCE OF INTERVENING SEQUENCES IN 23S RIBOSOMAL RNA GENES OF CAMPYLOBACTER COLI ISOLATED FROM TURKEYS. - (Peer Reviewed Journal)
Chan, K., Miller, W.G., Mandrell, R.E., Kathariou, S. 2007. Association of erythromycin susceptibility and absence of intervening sequences in 23s ribosomal rna genes of campylobacter coli isolated from turkeys.. Applied and Environmental Microbiology. 73(4)1208-1214
CRYPTIC PLASMIDS ISOLATED FROM CAMPYLOBACTER STRAINS REPRESENT MULTIPLE, NOVEL INCOMPATIBILITY GROUPS - (Peer Reviewed Journal)
Miller, W.G., Heath, S., Mandrell, R.E. 2007. Cryptic plasmids isolated from Campylobacter strains represent multiple, novel incompatibility groups. Plasmid. 57(2):108-117.
COMPARATIVE GENOMIC ANALYSIS OF CAMPYLOBACTER JEJUNI STRAINS REVEALS DIVERSITY DUE TO GENOMIC ELEMENTS SIMILAR TO THOSE PRESENT IN C. JEJUNI STRAIN RM1221 - (Peer Reviewed Journal)
Parker, C., Quinones, B., Miller, W.G., Horn, S.T., Mandrell, R.E. 2006. Comparative genomic analysis of Campylobacter jejuni strains reveals diversity due to genomic elements similar to those present in C. jejuni strain RM1221. Journal of Clinical Microbiology.44:11:4125-4135
SUB-SPECIATING CAMPYLOBACTER JEJUNI BY PROTEOMIC ANALYSIS OF ITS PROTEIN BIOMARKERS AND THEIR POST-TRANSLATIONAL MODIFICATIONS - (Peer Reviewed Journal)
Fagerquist, C.K., Bates, A.H., Heath, S., King, B.C., Garbus, B.R., Harden, L.A., Miller, W.G. Sub-speciating campylobacter jejuni by proteomic analysis of its protein biomarkers and their post-translational modifications. Journal of Proteome Research. 5:10:2527-2538
Bacterial population dynamics of aerobic and anaerobic dairy waste treatment - (Abstract Only)
COMPARISON OF THE CHEMICAL COMPOSITION AND BACTERIAL POPULATION STRUCTURE OF DAIRY WASTE BEFORE AND AFTER AEROBIC AND ANAEROBIC DIGESTION - (Abstract Only)
Mcgarvey, J.A., Miller, W.G., Zhong, R., Mitloehner, F., Lathrop, J.R., Ma, Y. 2006. Comparison of the chemical composition and bacterial population structure of dairy waste before and after aerobic and anaerobic digestion. [Abstract]. American Society of Microbiology. Poster Q333.
BACTERIAL POPULATION DYNAMICS DURING WASTE TREATMENT AND SUBSEQUENT STORAGE IN SIMULATED WASTEWATER HOLDING LAGOONS. - (Abstract Only)
Mcgarvey, J.A., Miller, W.G., Mitloehner, F., Ruihong, Z., Yangu, M. 2006. Bacterial population dynamics during waste treatment and subsequent storage in simulated wastewater holding lagoons [ Abstract]. Poster B1102.
Bacterial population dynamics during waste treatment and subsequent storage in simulated wastewater holding lagoons. - (Abstract Only)
SURFACE SANITIZATION OF CANTALOUPES USING THYMOL/CINNAMALDEHYDE - (Proceedings)
Mcgarvey, J.A., Barak Cunningham, J.D., Miller, W.G. 2005. Surface sanitization of cantaloupes using thymol/cinnamaldehyde. California Melon Research Board Annual Meeting, November 20-23, 2005, Hermosilla, MX.
BACTERIAL POPULATION STRUCTURE OF DAIRY WASTEWATERS - (Abstract Only)
Mcgarvey, J.A., Miller, W.G., Sanchez, S., Silva, C.J. 2005. Bacterial population structure of dairy wastewaters [abstract]. International Union of Microbiological Societies, July 23-28, 2005, San Francisco, CA. Poster No. B1102.
EMERGING CAMPYLOBACTER SPECIES ()
Mandrell, R.E., Miller, W.G. 2006. Emerging campylobacter species. Book Chapter. Campylobacter, Motarjemi Y and Adams, M.D.(editors) Woodhead Publishing, Cambridge, UK 476-521.
BACTERIAL AND CHEMICAL COMPOSITION OF DAIRY WASTEWATER - (Abstract Only)
Mcgarvey, J.A., Miller, W.G., Sanchez, S., Silva, C.J. 2005. Bacterial and chemical composition of dairy wastewater [abstract]. American Society for Microbiology General Meeting, 6/5-6/9/05, Atlanta, GA. P. 008.
GENOMIC AND PROTEOMIC IDENTIFICATION OF A DNA-BINDING PROTEIN USED IN THE "FINGERPRINTING" OF CAMPYLOBACTER SPECIES AND STRAINS BY MALDI-TOF-MS PROTEIN BIOMARKER ANALYSIS - (Peer Reviewed Journal)
Fagerquist, C.K., Miller, W.G., Harden, L.A., Bates, A.H., Vensel, W.H., Wang, G., Mandrell, R.E. 2005. Genomic and proteomic identification of a dna-binding protein used in the "fingerprinting" of campylobacter species and strains by maldi-tof-ms protein biomarker analysis. Analytical Chemistry. web release 6/25/05, 77:4897-4907
SPECIATION OF CAMPYLOBACTER COLI, C. JEJUNI, C. HELVETICUS, C. LARI, C. SPUTORUM, AND C. UPSALIENSIS BY MATRIX-ASSISTED LASER DESORPTION IONIZATION-TIME OF FLIGHT (MALDI-TOF) MASS SPECTROMETRY - (Peer Reviewed Journal)
Mandrell, R.E., Harden, L.A., Bates, A.H., Miller, W.G., Haddon, W.F., Fagerquist, C.K. 2005. Speciation of campylobacter coli, c. jejuni, c. helveticus, c. lari, c. sputorum, and c. upsaliensis by matrix-assisted laser desorption ionization-time of flight (maldi-tof) mass spectrometry. Applied and Environmental Microbiology. 71:10 p. 6292-6307
COMPARISON OF BACTERIAL POPULATIONS AND CHEMICAL COMPOSITION OF DAIRY WASTEWATER HELD IN CIRCULATED AND STAGNANT LAGOONS - (Peer Reviewed Journal)
Mcgarvey, J.A., Miller, W.G., Sanchez, S., Silva, C.J., Whitehand, L.C. 2005 Comparison of bacterial populations and chemical composition of dairy wastewater held in circulated and stagnant lagoons [abstract]. Journal of Applied Microbiology. 99(10):867-877.
COMPARISON OF CIRCULATED AND STAGNANT DAIRY WASTEWATERS - (Abstract Only)
McGarvey, J.A., Miller, W.G., Sanchez, S. 2005. Comparison of circulated and stagnant dairy wastewaters [abstract]. International Conference on Environmental, Industrial and Applied Microbiology, March 15-18, 2005, Badajoz, Spain. P. 71
COMPARISON OF CAMPYLOBACTER JEJUNI LOS BIOSYNTHESIS LOCI FROM A VARIETY OF SOURCES - (Peer Reviewed Journal)
Parker, C., Horn, S.T., Gilbert, M., Miller, W.G., Woodward, D., Mandrell, R.E. Comparison of campylobacter jejuni los biosynthesis loci from a variety of sources. Journal of Clinical Microbiology. 43:2771-2781.
EXTENDED MULTILOCUS SEQUENCE TYPING SYSTEM FOR CAMPYLOBACTER COLI, C. LARI, C. UPSALIENSIS, AND C. HELVETICUS. - (Peer Reviewed Journal)
Miller, W.G., On, S., Wang, G., Fontanoz, S., Lastovica, A., Mandrell, R.E. 2005. Extended multilocus sequence typing system for campylobacter coli, c. lari, c. upsaliensis, and c. helveticus. Journal of Clinical Microbiology. 43(5).2315-2329.
PRODUCTION OF AUTOINDUCER-2 IN SALMONELLA ENTERICA SEROVAR THOMPSON CONTRIBUTES TO ITS FITNESS IN CHICKENS BUT NOT ON CILANTRO PLANT LEAF SURFACES - (Peer Reviewed Journal)
Brandl, M., Miller, W.G., Bates, A.H., Mandrell, R.E. 2005. Production of autoinducer-2 in salmonella enterica serovar thompson contributes to its fitness in chickens but not on cilantro plant leaf surfaces. Applied and Environmental Microbiology. 71(5):2653-2662.
DIVERSITY OF CAMPYLOBACTER JEJUNI TYPE I RESTRICTION-MODIFICATION LOCI. - (Peer Reviewed Journal)
Miller, W.G., Pearson, B.M., Wells, J.M., Kapitonov, V.V., Mandrell, R.E. 2005. Diversity of campylobacter jejuni type i restriction-modification loci. Microbiology. 151:337-351.
MAJOR STRUCTURAL DIFFERENCES AND NOVEL POTENTIAL VIRULENCE MECHANISMS FROM THE GENOMES OF MULTIPLE CAMPYLOBACTER SPECIES - (Peer Reviewed Journal)
Fouts, D.E., Mongodin, E.F., Mandrell, R.E., Miller, W.G., Rasko, D.A., Ravel, J., Brinkac, L.M., Deboy, R.T., Parker, C., Daugherty, S.C. 2005. Major structural differences and novel potential virulence mechanisms from the genomes of multiple Campylobacter species. PLoS Biology 3(1):e15.
DIFFERENTIATION OF CAMPYLOBACTER COLI, CAMPYLOBACTER JEJUNI, CAMPYLOBACTER LARI AND CAMPYLOBACTER UPSALIENSIS USING A MULTIPLEX PCR DEVELOPED FROM THE NUCLEOTIDE SEQUENCE OF THE LIPID A GENE LPXA. - (Peer Reviewed Journal)
Klena, J.D., Parker, C., Knibb, K., Ibbitt, C., Devane, P.M., Horn, S.T., Miller, W.G., Konkel, M. 2004. Differentiation of campylobacter coli, campylobacter jejuni, campylobacter lari and campylobacter upsaliensis using a multiplex pcr developed from the nucleotide sequence of the lipid a gene lpxa. Journal of Clinical Microbiology. 42(12):5549-5557.
PREVALENCE OF CAMPYLOBACTER IN THE FOOD AND WATER SUPPLY: INCIDENCE, OUTBREAKS, ISOLATION AND DETECTION ()
Miller, W.G., Mandrell, R.E. 2005. Prevalence of campylobacter in the food and water supply: incidence, outbreaks, isolation and detection. In: Ketley, J., Konkel, M.E., editors. Campylobacter jejuni: New Perspectives in Molecular and Cellular Biology. Norfolk, UK. Horizon Scientific Press, 101-163.
FINGERPRINTING OF CAMPYLOBACTER SPECIES AND STRAINS BY MASS SPECTROMETRIC IDENTIFICATION OF PROTEIN BIOMARKERS - (Proceedings)
Fagerquist, C.K., Harden, L.A., Miller, W.G., Fouts, D., Nelson, K., Mandrell, R.E. 2004. Fingerprinting of campylobacter species and strains by mass spectrometric identification of protein biomarkers. In: Proceedings of the 52nd American Society for Mass Spectrometry Conference and Allied Topics. May 23-27, 2004 Nashville, TN. CDROM
IDENTIFICATION OF BACTERIAL POPULATIONS IN DAIRY WASTEWATERS BY USE OF 16S RRNA GENE SEQUENCES AND OTHER GENETIC MARKERS - (Peer Reviewed Journal)
McGarvey, J.A., Miller, W., Sanchez, S., Stanker, L.H. 2004. Identification of bacterial populations in dairy wastewaters by use of 16S rRNA gene sequences and other genetic markers. Applied and Environmental Microbiology. 70(7):4267-4275.
IDENTIFICATION OF BACTERIAL POPULATIONS IN AGRICULTURAL WASTE WATER USING 16S RDNA SEQUENCES AND OTHER GENETIC MARKERS. - (Abstract Only)
Mcgarvey, J.A., Stanker, L.H., Ravva, S.V., Miller, W.G., Sanchez, S. 2004. Identification of bacterial populations in agricultural waste water using 16s rdna sequences and other genetic markers [Abstract]. American Society for Microbiology Meeting. Poster Q030.
BACTERIAL ANALYSIS OF DAIRY WASTEWATER, A MOLECULAR APPROACH - (Proceedings)
McGarvey, J.A., Ravva, S.V., Stanker, L.H., Miller, W.G., Sanchez, S. Bacterial analysis of dairy wastewater, a molecular approach. Meeting Abstract.
COLONIZATION OF ARABIDOPSIS THALIANA WITH SALMONELLA ENTERICA AND ENTEROHEMORRHAGIC ESCHERICHIA COLI 157:H7 AND COMPETITIAN BY ENTEROBACTOR ASBURIAE - (Peer Reviewed Journal)
COOLEY, M.B., MILLER, W.G., MANDRELL, R.E. COLONIZATION OF ARABIDOPSIS THALIANA WITH SALMONELLA ENTERICA AND ENTEROHEMORRHAGIC ESCHERICHIA COLI 157:H7 AND COMPETITIAN BY ENTEROBACTOR ASBURIAE. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2003. v 68(8) p.4915-4926
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