Yiping He
Molecular Characterization of Foodborne Pathogens Research
Research Molecular Biologist
Phone: (215) 233-6422
Fax: (215) 233-6581
USDA,REE,ARS,NAA,ERRC
600 E MERMAID LANE
ERRC
WYNDMOOR, PA 190388598
Publications
(Clicking on the reprint icon
will take you to the publication reprint.)
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Comparative analysis of genomic and functional characteristics of a multidrug resistant Campylobacter jejuni strain YH002 isolated from retail beef liver
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(Peer Reviewed Journal)
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Ghatak, S., He, Y., Reed, S.A., Irwin, P.L. 2020. Comparative analysis of genomic and functional characteristics of a multidrug resistant Campylobacter jejuni strain YH002 isolated from retail beef liver. Foodborne Pathogens and Disease. https://doi.org/10.1089/fpd.2019.2770.
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Complete genome sequence and annotation of Campylobacter jejuni YH003 isolated from retail chicken
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(Peer Reviewed Journal)
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He, Y., Reed, S.A., Strobaugh Jr, T.P. 2020. Complete genome sequence and annotation of Campylobacter jejuni YH003 isolated from retail chicken. Microbiology Resource Announcements. https://doi.org/10.1128/MRA.01307-19.
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Impacts of clarification techniques on sample constituents and pathogen retention
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(Peer Reviewed Journal)
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Armstrong, C.M., Gehring, A.G., Paoli, G., Chen, C., He, Y., Capobianco Jr, J.A. 2019. Impacts of clarification techniques on sample constituents and pathogen retention. Foods. https://doi.org/10.3390/foods8120636.
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Pulsed-field gel electrophoresis typing of Staphylococcus aureus strains
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He, Y., Reed, S.A. 2019. Pulsed-field gel electrophoresis typing of Staphylococcus aureus strains. Methods in Molecular Biology. Methods in Molecular Biology.springer,78-88. https://doi.org/10.1007/978-1-4939-9849-4_5.
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A comprehensive multilocus sequence typing scheme for identification and genotyping of Staphylococcus strains
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(Peer Reviewed Journal)
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Song, M., Li, Q., He, Y., Feng, Z., Lan, L., Fan, Y., Liu, H., Chen, D., Yang, M. 2019. A comprehensive multilocus sequence typing scheme for identification and genotyping of Staphylococcus strains. Foodborne Pathogens and Disease. 16(5):331-338. https://doi.org/10.1089/fpd.2018.2565.
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Whole genome sequencing and annotation of Staphylococcus aureus strain SJTUF_J27 isolated from seaweed
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(Peer Reviewed Journal)
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Xie, Y., He, Y., Ghatak, S., Irwin, P.L., Yan, X., Strobaugh Jr, T.P., Gehring, A.G. 2018. Whole genome sequencing and annotation of Staphylococcus aureus strain SJTUF_J27 isolated from seaweed. Data in Brief. 20:894-898. https://doi.org/10.1016/j.dib.2018.08.084.
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Rapid and potentially portable detection and quantification technologies for foodborne pathogens
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(Proceedings)
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Gehring, A.G., Armstrong, C.M., Capobianco Jr, J.A., He, Y., Paoli, G., Fratamico, P.M. 2017. Rapid and potentially portable detection and quantification technologies for foodborne pathogens . United States-Japan Cooperative Program in Natural Resources (UJNR). p.12.
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Genetic basis for the resistance of Staphylococcus aureus to peptidoglycan hydrolase by comparative transcriptome and whole genome sequence analysis
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(Abstract Only)
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Whole genome sequencing and analysis of Campylobacter coli YH502 from retail chicken reveals a plasmid-borne type VI secretion system
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(Peer Reviewed Journal)
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Ghatak, S., He, Y., Reed, S.A., Strobaugh Jr, T.P., Irwin, P.L. 2017. Whole genome sequencing and analysis of Campylobacter coli YH502 from retail chicken reveals a plasmid-borne type VI secretion system. Genomics Data. 11:128-131.
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Evaluation of ELISA tests specific for Shiga toxin 1 and 2 in food and water samples
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(Peer Reviewed Journal)
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Gehring, A.G., Fratamico, P.M., Lee, J., Ruth, L., He, X., He, Y., Paoli, G., Stanker, L.H., Rubio, F.M. 2017. Evaluation of ELISA tests specific for Shiga toxin 1 and 2 in food and water samples. Food Control. 77:145-149.
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Study on the mechanism of antibacterial action of magnesium oxide nanoparticles against foodborne pathogens
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(Peer Reviewed Journal)
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He, Y., Ingudam, S., Reed, S.A., Gehring, A.G., Strobaugh Jr, T.P., Irwin, P.L. 2016. Study on the mechanism of antibacterial action of magnesium oxide nanoparticles against foodborne pathogens. Journal of Nanobiotechnology (Biomed Central Open Access). DOI:10.1186/s12951-016-0202-0.
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Antimicrobial properties and mechanism of magnesium oxide nanoparticles on Campylobacter, E. coli O157:H7, and Salmonella
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(Abstract Only)
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Reed, S.A., Ingudum, S., Irwin, P.L., He, Y. 2015. Antimicrobial properties and mechanism of magnesium oxide nanoparticles on Campylobacter, E. coli O157:H7, and Salmonella. Meeting Abstract. meeting abstract.
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An improved method to simultaneously detect Salmonella enteritidis, Escherichia coli O157 and Listeria monocytogenes in ground black pepper using multiplex real-time PCR
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(Abstract Only)
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Complete genome sequence of Campylobacter jejuni YH001 from beef liver which contains a novel plasmid
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(Peer Reviewed Journal)
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He, Y., Yan, X., Reed, S.A., Xie, Y., Chen, C., Irwin, P.L. 2015. Complete genome sequence of Campylobacter jejuni YH001 from beef liver which contains a novel plasmid. Genome Announcements. 3(1):e01492-14.
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Near-quantitative extraction of genomic DNA from various food-borne eubacteria
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(Peer Reviewed Journal)
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Irwin, P.L., Nguyen, L.T., He, Y., Paoli, G., Gehring, A.G., Chen, C. 2014. Near-quantitative extraction of genomic DNA from various food-borne eubacteria. BMC Microbiology. DOI: 10.1186/s12866-014-0326-z.
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Rapid identification and classification of Campylobacter spp. using laser optical scattering technology
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(Peer Reviewed Journal)
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He, Y., Reed, S.A., Bhunia, A.K., Gehring, A.G., Nguyen, L.T., Irwin, P.L. 2015. Rapid identification and classification of Campylobacter spp. using laser optical scattering technology. Food Microbiology. 47:28-35.
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Variability in DNA polymerase efficiency: effects of random error, DNA extraction method, and isolate type
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(Peer Reviewed Journal)
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Irwin, P.L., Nguyen, L.T., Chen, C., He, Y. 2014. Variability in DNA polymerase efficiency: effects of random error, DNA extraction method, and isolate type. JSM Mathematics & Statistics. 1(1):1003.
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A high-throughput, precipitating colorimetric sandwich ELISA microarray for shiga toxins
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(Peer Reviewed Journal)
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Gehring, A.G., He, X., Fratamico, P.M., Lee, J., Bagi, L.K., Brewster, J.D., Paoli, G., He, Y., Xie, Y., Skinner, C.B., Barnett, C., Harris, D. 2014. A high-throughput, precipitating colorimetric sandwich ELISA microarray for shiga toxins. Toxins. 6:1855-1872.
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A robust multiplex real-time PCR method for simultaneous detection of Salmonella spp., Escherichia coli O157 and Listeria monocytogenes in fresh fruits and vegetables
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(Abstract Only)
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Simultaneous detection of Salmonella spp., Escherichia coli O157 and Listeria monocytogenes in a variety of cheeses and spinach using a multiplex real-time PCR method
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(Abstract Only)
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Pulsed-field gel electrophoresis typing of Staphylococcus aureus isolates
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He, Y., Xie, Y., Reed, S.A. 2013. Pulsed-field gel electrophoresis typing of Staphylococcus aureus isolates. In: Walker, John M. Methods in Molecular Biology. New York, NY:Humana Press. p. 103-111.
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High-throughput antibody microarray for bacteria and toxins
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(Abstract Only)
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Optimization and application of a custom microarray for the detection and genotyping of E. coli O157:H7 in fresh meat samples
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(Peer Reviewed Journal)
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Suo, B., He, Y., Irwin, P.L., Gehring, A.G. 2013. Optimization and application of a custom microarray for the detection and genotyping of E. coli O157:H7 in fresh meat samples. Journal of Food Analytical Methods. 6:1477-1484.
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Non-stochastic sampling error in quantal analyses for Campylobacter species on poultry products
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(Peer Reviewed Journal)
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Irwin, P.L., Reed, S.A., Brewster, J.D., Nguyen, L.T., He, Y. 2013. Non-stochastic sampling error in quantal analyses for Campylobacter species on poultry products. Analytical and Bioanalytical Chemistry. 405(7):2353-2369.
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A multiplex real-time PCR method for simultaneous detection of Salmonella spp., Escherichia coli O157 and Listeria monocytogenes in soft cheese
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(Abstract Only)
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Rapid identification and classification of Staphylococcus aureus by attenuated total reflectance fourier transform infrared spectroscopy
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(Peer Reviewed Journal)
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Xie, Y., Xu, S., Hu, Y., Chen, W., He, Y., Shi, X. 2012. Rapid identification and classification of Staphylococcus aureus by attenuated total reflectance fourier transform infrared spectroscopy. Journal of Food Safety. 32(2):176-183.
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Genotypes and enterotoxin gene profiles of Staphylococcus aureus clinical isolates from China
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(Peer Reviewed Journal)
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Xie, Y., He, Y., Gehring, A.G., Hu, Y., Tu, S., Shi, X. 2011. Genotypes and enterotoxin gene profiles of Staphylococcus aureus clinical isolates from China. PLoS One. DOI: 10.1371/journal.pone.0028276.
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Antibacterial activities of magnesium oxide (MgO) nanoparticles against foodborne pathogens
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(Peer Reviewed Journal)
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Jin, Z.T., He, Y. 2012. Antibacterial activities of magnesium oxide (MgO) nanoparticles against foodborne pathogens. Journal of Nanoparticle Research. 13:6877-6885.
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Antimicrobial activity of spherical silver nanoparticles: evidence for induction of a prolonged bacterial lag phase
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(Abstract Only)
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Effects of polyphosphate additives on the pH of processed chicken exudates and the survival of Campylobacter
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(Peer Reviewed Journal)
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Gunther, N.W., He, Y., Fratamico, P.M. 2011. Effects of polyphosphate additives on the pH of processed chicken exudates and the survival of Campylobacter. Journal of Food Protection. 74:1735-1740.
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Antibacterial activity and mechanism of action of zinc oxide nanoparticles against Campylobacter jejuni
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(Peer Reviewed Journal)
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Xie, Y., He, Y., Irwin, P.L., Jin, Z.T., Shi, X. 2011. Antibacterial activity and mechanism of action of zinc oxide nanoparticles against Campylobacter jejuni. Applied and Environmental Microbiology. 77:2325-2331.
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Antimicrobial activity of spherical silver nanoparticles prepared using a biocompatible macromolecular capping agent: evidence for induction of a greatly prolonged bacterial lag phase
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(Peer Reviewed Journal)
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Irwin, P.L., Martin, J., Nguyen, L.T., He, Y., Gehring, A.G., Chen, C. 2010. Antimicrobial activity of spherical silver nanoparticles prepared using a biocompatible macromolecular capping agent: evidence for induction of a greatly prolonged bacterial lag phase. Journal of Nanobiotechnology (Biomed Central Open Access). 34:1-12.
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Simultaneous detection of Escherichia coli O157:H7 and Salmonella Typhimurium: The use of magnetic beads conjugated with multiple capture antibodies
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(Peer Reviewed Journal)
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Tu, S., Reed, S.A., Gehring, A.G., He, Y. 2010. Simultaneous detection of Escherichia coli O157:H7 and Salmonella Typhimurium: The use of magnetic beads conjugated with multiple capture antibodies. Journal of Food Analytical Methods. DOI 10.1007/s12161-010-9175-z.
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Simultaneous detection and differentiation of Campylobacter jejuni, C. coli, and C. lari in chickens by multiplex real-time PCR
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(Peer Reviewed Journal)
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He, Y., Yao, X., Gunther, N.W., Tu, S., Shi, X. 2010. Simultaneous detection and differentiation of Campylobacter jejuni, C. coli, and C. lari in chickens by multiplex real-time PCR. Journal of Food Analytical Methods. 137:168-174.
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A multiplex real-time PCR for simultaneous detection of Salmonella spp., E. coli O157 and L. monocytogenes in meat products
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(Peer Reviewed Journal)
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Suo, B., He, Y., Tu, S., Shi, X. 2010. A multiplex real-time PCR for simultaneous detection of Salmonella spp., E. coli O157 and L. monocytogenes in meat products. Foodborne Pathogens and Disease. 7(6):619-628.
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QUANTIFICATIVE ANALYSIS OF VIABLE, STRESSED AND DEAD CELLS OF CAMPYLOBACTER JEJUNI STRAIN 81-176
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(Peer Reviewed Journal)
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He, Y., Chen, C. 2010. QUANTIFICATIVE ANALYSIS OF VIABLE, STRESSED AND DEAD CELLS OF CAMPYLOBACTER JEJUNI STRAIN 81-176. Food Microbiology. 27:439-446.
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Development of an oligonucleotide-based microarray to detect multiple foodborne pathogens
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(Peer Reviewed Journal)
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Suo, B., He, Y., Paoli, G., Gehring, A.G., Tu, S., Shi, X. 2009. Development of an oligonucleotide-based microarray to detect multiple foodborne pathogens. Molecular and Cellular Probes. 24:77-86.
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A microarray approach for simultaneous detection of multiple pathogens in food
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(Abstract Only)
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Development of an oligonucleotide-based microarray to detect multiple foodborne pathogens
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(Abstract Only)
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Suo, B., He, Y., Paoli, G., Gehring, A.G., Tu, S. 2009. Development of an oligonucleotide-based microarray to detect multiple foodborne pathogens. Meeting Abstract. 1:100.
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Production of Shiga-like toxins by Escherichia coli O157:H7: Effects of other bacteria and analogues of quorum sensing molecules
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(Peer Reviewed Journal)
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Tu, S., Uknalis, J., Paoli, G., He, Y., Gehring, A.G. 2009. Production of Shiga-like toxins by Escherichia coli O157:H7: Effects of other bacteria and analogues of quorum sensing molecules. Journal of Rapid Methods and Automation in Microbiology.17(4):420-437.
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Capture of E. coli O157:H7 using immunomagnetic beads of different size and antibody conjugating chemistry
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(Peer Reviewed Journal)
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Tu, S., Reed, S.A., Gehring, A.G., He, Y., Paoli, G. 2009. Capture of E. coli O157:H7 using immunomagnetic beads of different size and antibody conjugating chemistry. Sensors. 9:717-730.
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Detection of Salmonella Enteriditis from Egg Components Using Different Immunomagnetic Beads and Time-resolved Fluorescence
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(Peer Reviewed Journal)
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Tu, S., Reed, S.A., Gehring, A.G., He, Y. 2008. Detection of Salmonella Enteriditis from Egg Components Using Different Immunomagnetic Beads and Time-resolved Fluorescence. Journal of Food Analytical Methods. Available:http://www.springerlink.com/content/68381p3740355j10/
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Detection of Salmonella Enteriditis from egg components using different immunomagnetic beads and time–resolved fluorescence
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(Abstract Only)
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Tu, S., Reed, S.A., He, Y., Gehring, A.G. 2008. Detection of Salmonella Enteriditis from egg components using different immunomagnetic beads and time–resolved fluorescence. [Abstract]p.2-42.
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Analysis of AI-2/LuxS dependent transcriptional profiling in Campylobacter jejuni 81-176
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(Peer Reviewed Journal)
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He, Y., Frye, J.G., Strobaugh Jr, T.P., Chen, C. 2008. Ai-2/luxs dependent transcriptional profiling in campylobacter jejuni 81-176. Foodborne Pathogens and Disease. 5(4):399-415.
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Application of horse-radish peroxidase linked chemiluminescence to determine the production mechanism of Shiga-like toxins by E. coli O157:H7
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(Proceedings)
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Tu, S., Uknalis, J., Gehring, A.G., He, Y. 2007. Application of horse-radish peroxidase linked chemiluminescence to determine the production mechanism of Shiga-like toxins by E. coli O157:H7. Proceedings of SPIE.#6761
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Application of horse-radish peroxidase linked chemiluminescence to determine the production mechanism of Shiga-like toxins by E. coli O157:H7
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(Proceedings)
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Tu, S., Uknalis, J., Gehring, A.G., He, Y. 2007. Application of horse-radish peroxidase linked chemiluminescence to determine the production mechanism of Shiga-like toxins by E. coli O157:H7. Proceedings of SPIE.6761:67610C-1-67610C-9.
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Microarray Analysis of Quorum-Sensing Regulated Gene Expression in Campylobacter jejuni
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(Abstract Only)
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He, Y., Frye, J.G., Chen, C. 2007. Microarray Analysis of Quorum-Sensing Regulated Gene Expression in Campylobacter jejuni. Meeting Abstract.
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Comparison of methods for detecting live, stressed, and dead cells of Campylobacter jejuni
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(Abstract Only)
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Chen, C., He, Y. 2007. Comparison of methods for detecting live, stressed, and dead cells of Campylobacter jejuni. Abstract. International Association for Food Protection. P3-50.
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Detection of live/dead Campylobacter jejuni cells by real-time PCR
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(Abstract Only)
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Chen, C., He, Y. 2006. Detection of live/dead Campylobacter jejuni cells by real-time PCR. Abstract. p.3-1.
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AI-2 Quorum Sensing in Campylobacter jejuni
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(Abstract Only)
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He, Y., Chen, C. 2006. Ai-2 quorum sensing in campylobacter jejuni. Meeting Abstract.
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