Related Topics

Yiping He
Molecular Characterization of Foodborne Pathogens Research
General Biological Science

Phone: (215) 233-6422
Fax: (215) 233-6581

USDA,REE,ARS,NAA,ERRC
600 E MERMAID LANE
ERRC
WYNDMOOR , PA 190388598

Projects

Development of Portable Detection and Quantification Technologies for Foodborne Pathogens

	In-House Appropriated (D)
	Accession Number: 431165

Publications (Clicking on the reprint icon

will take you to the publication reprint.)

Genetic basis for the resistance of Staphylococcus aureus to peptidoglycan hydrolase by comparative transcriptome and whole genome sequence analysis -

Whole genome sequencing and analysis of Campylobacter coli YH502 from retail chicken reveals a plasmid-borne type VI secretion system -

Ghatak, S., He, Y., Reed, S.A., Strobaugh Jr, T.P., Irwin, P.L. 2017. Whole genome sequencing and analysis of Campylobacter coli YH502 from retail chicken reveals a plasmid-borne type VI secretion system. Genomics Data. 11:128-131.

Evaluation of ELISA tests specific for Shiga toxin 1 and 2 in food and water samples -

Gehring, A.G., Fratamico, P.M., Lee, J., Ruth, L., He, X., He, Y., Paoli, G., Stanker, L.H., Rubio, F.M. 2017. Evaluation of ELISA tests specific for Shiga toxin 1 and 2 in food and water samples. Food Control. 77:145-149.

Study on the mechanism of antibacterial action of magnesium oxide nanoparticles against foodborne pathogens -

He, Y., Ingudam, S., Reed, S.A., Gehring, A.G., Strobaugh Jr, T.P., Irwin, P.L. 2016. Study on the mechanism of antibacterial action of magnesium oxide nanoparticles against foodborne pathogens. Journal of Nanobiotechnology (Biomed Central Open Access). DOI:10.1186/s12951-016-0202-0.

Antimicrobial properties and mechanism of magnesium oxide nanoparticles on Campylobacter, E. coli O157:H7, and Salmonella -

Reed, S.A., Ingudum, S., Irwin, P.L., He, Y. 2015. Antimicrobial properties and mechanism of magnesium oxide nanoparticles on Campylobacter, E. coli O157:H7, and Salmonella. Meeting Abstract. meeting abstract.

An improved method to simultaneously detect Salmonella enteritidis, Escherichia coli O157 and Listeria monocytogenes in ground black pepper using multiplex real-time PCR -

Complete genome sequence of Campylobacter jejuni YH001 from beef liver which contains a novel plasmid -

He, Y., Yan, X., Reed, S.A., Xie, Y., Chen, C., Irwin, P.L. 2015. Complete genome sequence of Campylobacter jejuni YH001 from beef liver which contains a novel plasmid. Genome Announcements. 3(1):e01492-14.

Near-quantitative extraction of genomic DNA from various food-borne eubacteria -

Irwin, P.L., Nguyen, L.T., He, Y., Paoli, G., Gehring, A.G., Chen, C. 2014. Near-quantitative extraction of genomic DNA from various food-borne eubacteria. BMC Microbiology. DOI: 10.1186/s12866-014-0326-z.

Rapid identification and classification of Campylobacter spp. using laser optical scattering technology

He, Y., Reed, S.A., Bhunia, A.K., Gehring, A.G., Nguyen, L.T., Irwin, P.L. 2015. Rapid identification and classification of Campylobacter spp. using laser optical scattering technology. Food Microbiology. 47:28-35.

Variability in DNA polymerase efficiency: effects of random error, DNA extraction method, and isolate type -

Irwin, P.L., Nguyen, L.T., Chen, C., He, Y. 2014. Variability in DNA polymerase efficiency: effects of random error, DNA extraction method, and isolate type. JSM Mathematics & Statistics. 1(1):1003.

A high-throughput, precipitating colorimetric sandwich ELISA microarray for shiga toxins

Gehring, A.G., He, X., Fratamico, P.M., Lee, J., Bagi, L.K., Brewster, J.D., Paoli, G., He, Y., Xie, Y., Skinner, C.B., Barnett, C., Harris, D. 2014. A high-throughput, precipitating colorimetric sandwich ELISA microarray for shiga toxins. Toxins. 6:1855-1872.

A robust multiplex real-time PCR method for simultaneous detection of Salmonella spp., Escherichia coli O157 and Listeria monocytogenes in fresh fruits and vegetables -

Simultaneous detection of Salmonella spp., Escherichia coli O157 and Listeria monocytogenes in a variety of cheeses and spinach using a multiplex real-time PCR method -

Pulsed-field gel electrophoresis typing of Staphylococcus aureus isolates -

He, Y., Xie, Y., Reed, S.A. 2013. Pulsed-field gel electrophoresis typing of Staphylococcus aureus isolates. In: Walker, John M. Methods in Molecular Biology. New York, NY:Humana Press. p. 103-111.

High-throughput antibody microarray for bacteria and toxins -

Optimization and application of a custom microarray for the detection and genotyping of E. coli O157:H7 in fresh meat samples

Suo, B., He, Y., Irwin, P.L., Gehring, A.G. 2013. Optimization and application of a custom microarray for the detection and genotyping of E. coli O157:H7 in fresh meat samples. Journal of Food Analytical Methods. 6:1477-1484.

Non-stochastic sampling error in quantal analyses for Campylobacter species on poultry products

Irwin, P.L., Reed, S.A., Brewster, J.D., Nguyen, L.T., He, Y. 2013. Non-stochastic sampling error in quantal analyses for Campylobacter species on poultry products. Analytical and Bioanalytical Chemistry. 405(7):2353-2369.

A multiplex real-time PCR method for simultaneous detection of Salmonella spp., Escherichia coli O157 and Listeria monocytogenes in soft cheese -

Rapid identification and classification of Staphylococcus aureus by attenuated total reflectance fourier transform infrared spectroscopy -

Xie, Y., Xu, S., Hu, Y., Chen, W., He, Y., Shi, X. 2012. Rapid identification and classification of Staphylococcus aureus by attenuated total reflectance fourier transform infrared spectroscopy. Journal of Food Safety. 32(2):176-183.

Genotypes and enterotoxin gene profiles of Staphylococcus aureus clinical isolates from China -

Xie, Y., He, Y., Gehring, A.G., Hu, Y., Tu, S., Shi, X. 2011. Genotypes and enterotoxin gene profiles of Staphylococcus aureus clinical isolates from China. PLoS One. DOI: 10.1371/journal.pone.0028276.

Antibacterial activities of magnesium oxide (MgO) nanoparticles against foodborne pathogens -

Jin, Z.T., He, Y. 2012. Antibacterial activities of magnesium oxide (MgO) nanoparticles against foodborne pathogens. Journal of Nanoparticle Research. 13:6877-6885.

Antimicrobial activity of spherical silver nanoparticles: evidence for induction of a prolonged bacterial lag phase -

Effects of polyphosphate additives on the pH of processed chicken exudates and the survival of Campylobacter

Gunther, N.W., He, Y., Fratamico, P.M. 2011. Effects of polyphosphate additives on the pH of processed chicken exudates and the survival of Campylobacter. Journal of Food Protection. 74:1735-1740.

Antibacterial activity and mechanism of action of zinc oxide nanoparticles against Campylobacter jejuni -

Xie, Y., He, Y., Irwin, P.L., Jin, Z.T., Shi, X. 2011. Antibacterial activity and mechanism of action of zinc oxide nanoparticles against Campylobacter jejuni. Applied and Environmental Microbiology. 77:2325-2331.

Antimicrobial activity of spherical silver nanoparticles prepared using a biocompatible macromolecular capping agent: evidence for induction of a greatly prolonged bacterial lag phase -

Irwin, P.L., Martin, J., Nguyen, L.T., He, Y., Gehring, A.G., Chen, C. 2010. Antimicrobial activity of spherical silver nanoparticles prepared using a biocompatible macromolecular capping agent: evidence for induction of a greatly prolonged bacterial lag phase. Journal of Nanobiotechnology (Biomed Central Open Access). 34:1-12.

Simultaneous detection of Escherichia coli O157:H7 and Salmonella Typhimurium: The use of magnetic beads conjugated with multiple capture antibodies -

Tu, S., Reed, S.A., Gehring, A.G., He, Y. 2010. Simultaneous detection of Escherichia coli O157:H7 and Salmonella Typhimurium: The use of magnetic beads conjugated with multiple capture antibodies. Journal of Food Analytical Methods. DOI 10.1007/s12161-010-9175-z.

Simultaneous detection and differentiation of Campylobacter jejuni, C. coli, and C. lari in chickens by multiplex real-time PCR -

He, Y., Yao, X., Gunther, N.W., Tu, S., Shi, X. 2010. Simultaneous detection and differentiation of Campylobacter jejuni, C. coli, and C. lari in chickens by multiplex real-time PCR. Journal of Food Analytical Methods. 137:168-174.

A multiplex real-time PCR for simultaneous detection of Salmonella spp., E. coli O157 and L. monocytogenes in meat products -

Suo, B., He, Y., Tu, S., Shi, X. 2010. A multiplex real-time PCR for simultaneous detection of Salmonella spp., E. coli O157 and L. monocytogenes in meat products. Foodborne Pathogens and Disease. 7(6):619-628.

QUANTIFICATIVE ANALYSIS OF VIABLE, STRESSED AND DEAD CELLS OF CAMPYLOBACTER JEJUNI STRAIN 81-176 -

He, Y., Chen, C. 2010. QUANTIFICATIVE ANALYSIS OF VIABLE, STRESSED AND DEAD CELLS OF CAMPYLOBACTER JEJUNI STRAIN 81-176. Food Microbiology. 27:439-446.

Development of an oligonucleotide-based microarray to detect multiple foodborne pathogens -

Suo, B., He, Y., Paoli, G., Gehring, A.G., Tu, S., Shi, X. 2009. Development of an oligonucleotide-based microarray to detect multiple foodborne pathogens. Molecular and Cellular Probes. 24:77-86.

A microarray approach for simultaneous detection of multiple pathogens in food -

Development of an oligonucleotide-based microarray to detect multiple foodborne pathogens -

Suo, B., He, Y., Paoli, G., Gehring, A.G., Tu, S. 2009. Development of an oligonucleotide-based microarray to detect multiple foodborne pathogens. Meeting Abstract. 1:100.

Production of Shiga-like toxins by Escherichia coli O157:H7: Effects of other bacteria and analogues of quorum sensing molecules -

Tu, S., Uknalis, J., Paoli, G., He, Y., Gehring, A.G. 2009. Production of Shiga-like toxins by Escherichia coli O157:H7: Effects of other bacteria and analogues of quorum sensing molecules. Journal of Rapid Methods and Automation in Microbiology.17(4):420-437.

Capture of E. coli O157:H7 using immunomagnetic beads of different size and antibody conjugating chemistry -

Tu, S., Reed, S.A., Gehring, A.G., He, Y., Paoli, G. 2009. Capture of E. coli O157:H7 using immunomagnetic beads of different size and antibody conjugating chemistry. Sensors. 9:717-730.

Detection of Salmonella Enteriditis from Egg Components Using Different Immunomagnetic Beads and Time-resolved Fluorescence -

Tu, S., Reed, S.A., Gehring, A.G., He, Y. 2008. Detection of Salmonella Enteriditis from Egg Components Using Different Immunomagnetic Beads and Time-resolved Fluorescence. Journal of Food Analytical Methods. Available:http://www.springerlink.com/content/68381p3740355j10/

Detection of Salmonella Enteriditis from egg components using different immunomagnetic beads and time–resolved fluorescence -

Tu, S., Reed, S.A., He, Y., Gehring, A.G. 2008. Detection of Salmonella Enteriditis from egg components using different immunomagnetic beads and time–resolved fluorescence. [Abstract]p.2-42.

Analysis of AI-2/LuxS dependent transcriptional profiling in Campylobacter jejuni 81-176 -

He, Y., Frye, J.G., Strobaugh Jr, T.P., Chen, C. 2008. Ai-2/luxs dependent transcriptional profiling in campylobacter jejuni 81-176. Foodborne Pathogens and Disease. 5(4):399-415.

Application of horse-radish peroxidase linked chemiluminescence to determine the production mechanism of Shiga-like toxins by E. coli O157:H7 -

Tu, S., Uknalis, J., Gehring, A.G., He, Y. 2007. Application of horse-radish peroxidase linked chemiluminescence to determine the production mechanism of Shiga-like toxins by E. coli O157:H7. Proceedings of SPIE.#6761

Application of horse-radish peroxidase linked chemiluminescence to determine the production mechanism of Shiga-like toxins by E. coli O157:H7 -

Microarray Analysis of Quorum-Sensing Regulated Gene Expression in Campylobacter jejuni -

He, Y., Frye, J.G., Chen, C. 2007. Microarray Analysis of Quorum-Sensing Regulated Gene Expression in Campylobacter jejuni. Meeting Abstract.

Comparison of methods for detecting live, stressed, and dead cells of Campylobacter jejuni -

Chen, C., He, Y. 2007. Comparison of methods for detecting live, stressed, and dead cells of Campylobacter jejuni. Abstract. International Association for Food Protection. P3-50.

Detection of live/dead Campylobacter jejuni cells by real-time PCR -

Chen, C., He, Y. 2006. Detection of live/dead Campylobacter jejuni cells by real-time PCR. Abstract. p.3-1.

AI-2 Quorum Sensing in Campylobacter jejuni -

He, Y., Chen, C. 2006. Ai-2 quorum sensing in campylobacter jejuni. Meeting Abstract.

Last Modified: 09/25/2017

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