Research Project: Identification of the Ecological Niches and Development of Intervention Strategies to Reduce Pathogenic Foodborne Pathogens in Poultry

Location: Food and Feed Safety Research

Publications (Clicking on the reprint icon will take you to the publication reprint.)

Reserpine improves Enterobacteriaceae resistance in chicken intestine via neuro-immunometabolic signaling and MEK1/2 activation - (Peer Reviewed Journal)
Redweik, G.A., Kogut, M.H., Arsenault, R.J., Lyte, M., Mellata, M. 2021. Reserpine improves Enterobacteriaceae resistance in chicken intestine via neuro-immunometabolic signaling and MEK1/2 activation. Communications Biology. 4. Article 1359. https://doi.org/10.1038/s42003-021-02888-3.

Novel models for chronic intestinal inflammation in chickens: Intestinal inflammation pattern and biomarkers - (Peer Reviewed Journal)
Dal Pont, G.C., Belote, B.L., Lee, A., Bortoluzzi, C., Eyng, C., Sevastiyanova, M., Khadem, A., Santin, E., Farnell, Y.Z., Gougoulias, C., Kogut, M.H. 2021. Novel models for chronic intestinal inflammation in chickens: Intestinal inflammation pattern and biomarkers. Frontiers in Immunology. 12. Article 676628. https://doi.org/10.3389/fimmu.2021.676628.

A protected complex of biofactors and antioxidants improved growth performance and modulated the immunometabolic phenotype of broiler chickens undergoing early life stress - (Peer Reviewed Journal)
Bortoluzzi, C., Layahe, L., Perry, F., Arsenault, R.J., Santin, E., Korver, D., Kogut, M.H. 2021. A protected complex of biofactors and antioxidants improved growth performance and modulated the immunometabolic phenotype of broiler chickens undergoing early life stress. Poultry Science. 100(7). Article 101176. https://doi.org/10.1016/j.psj.2021.101176.

Competitive exclusion of intra-genus Salmonella in neonatal broilers - (Peer Reviewed Journal)
Pineda, M., Kogut, M.H., Genovese, K.J., Farnell, Y.Z., Zhao, D., Wang, X., Milby, A., Farnell, M. 2021. Competitive exclusion of intra-genus Salmonella in neonatal broilers. Microorganisms. 9(2). Article 446. https://doi.org/10.3390/microorganisms9020446.

Immunophysiology of the avian immune system - (Book / Chapter)
Kogut, M.H. 2021. Immunophysiology of the avian immune system. In: Scanes, C.G., Dridi, S., editors. Sturkie's Avian Physiology. 7th edition. Cambridge, MA: Academic Press. p. 591-609.

Role of JAK-STAT pathway in broiler chicks fed with chestnut tannins - (Peer Reviewed Journal)
Lee, A., Dal Pont, G.C., Battaglia, M., Arsenault, R.J., Kogut, M.H. 2021. Role of JAK-STAT pathway in broiler chicks fed with chestnut tannins. Animals. 11(2). Article 337. https://doi.org/10.3390/ani11020337.

Granulocytes - (Book / Chapter)

Factors modulating the avian immune system - (Book / Chapter)

Impact of the gut microbiota on the immune system - (Book / Chapter)

A role for the microbiota in the immune phenotype alteration associated with the induction of disease tolerance and persistent asymptomatic infection of Salmonella in the chicken - (Peer Reviewed Journal)
Lee, A., Bortoluzzi, C., Pilla, R., Kogut, M.H. 2020. A role for the microbiota in the immune phenotype alteration associated with the induction of disease tolerance and persistent asymptomatic infection of Salmonella in the chicken. Microorganisms. 8(12). Article 1879. https://doi.org/10.3390/microorganisms8121879.

Assessment of microbiological correlates and immunostimulatory potential of electron beam inactivated metabolically active yet non culturable (MAyNC) Salmonella Typhimurium - (Peer Reviewed Journal)
Praveen, C., Bhatia, S.S., Alaniz, R.C., Droleskey, R.E., Cohen, N.D., Jesudhasan, P., Pillai, S.D. 2021. Assessment of microbiological correlates and immunostimulatory potential of electron beam inactivated metabolically active yet non culturable (MAyNC) Salmonella Typhimurium. PLoS ONE. 16(4). Article e0243417. https://doi.org/10.1371/journal.pone.0243417.

Effect of moringa leaf powder and agave inulin on performance, intestinal morphology, and meat yield of broiler chickens - (Peer Reviewed Journal)
Moreno-Mendoza, Y., López-Villarreal, K.D., Hernández-Martínez, C.A., Rodríguez-Tovar, L.E., Hernández-Coronado, A.C., Soto-Domínguez, A., Hume, M.E., Méndez-Zamora, G. 2021. Effect of moringa leaf powder and agave inulin on performance, intestinal morphology, and meat yield of broiler chickens. Poultry Science. 100(2):738-745. https://doi.org/10.1016/j.psj.2020.11.058.

Can the use of older-generation beta-lactam antibiotics in livestock production over-select for beta-lactamases of greatest consequence for human medicine? An in vitro experimental model - (Peer Reviewed Journal)
Ogunrinu, O.J., Norman, K.N., Vinasco, J., Levent, G., Lawhon, S.D., Fajt, V.R., Volkova, V.V., Gaire , T., Poole, T.L., Genovese, K.J., Wittum, T.E., Scott, H.M. 2020. Can the use of older-generation beta-lactam antibiotics in livestock production over-select for beta-lactamases of greatest consequence for human medicine? An in vitro experimental model. PLoS ONE. 15(11). Article e0242195. https://doi.org/10.1371/journal.pone.0242195.

Disinfectant and antimicrobial susceptibility studies of the foodborne pathogen Campylobacter jejuni isolated from the litter of broiler chicken houses - (Peer Reviewed Journal)
Beier, R.C., Byrd II, J.A., Andrews, K., Caldwell, D.Y., Crippen, T.L., Anderson, R.C., Nisbet, D.J. 2021. Disinfectant and antimicrobial susceptibility studies of the foodborne pathogen Campylobacter jejuni isolated from the litter of broiler chicken houses. Poultry Science. 100(2):1024-1033. https://doi.org/10.1016/j.psj.2020.10.045.

The biological effects of microencapsulated organic acids and botanicals induces tissue-specific and dose-dependent changes to the Gallus gallus microbiota - (Peer Reviewed Journal)
Feye, K.M., Swaggerty, C.L., Kogut, M.H., Ricke, S.C., Piva, A., Grilli, E. 2020. The biological effects of microencapsulated organic acids and botanicals induces tissue-specific and dose-dependent changes to the Gallus gallus microbiota. BMC Microbiology. 20. Article 332. https://doi.org/10.1186/s12866-020-02001-4.

Effect of protein concentrations in the diet on productive performance, carcass characteristics, and meat chemical composition of broiler chickens in the dry subtropics - (Peer Reviewed Journal)
Infante-Rodriguez, F.M., Domínguez Muñoz, M.A., Montaño-Gómez, M.F., Hume, M.E., Anderson, R.C., Manríquez-Nuñez, O.M., López-Acevedo, E.A., Bautista-Martinez, Y., Salinas-Chavira, J. 2020. Effect of protein concentrations in the diet on productive performance, carcass characteristics, and meat chemical composition of broiler chickens in the dry subtropics. Nova Scientia. 12(25). https://doi.org/10.21640/ns.v12i25.2585.

Methylsulfonylmethane exhibits bacteriostatic inhibition of vancomycin resistant Enterococcus faecium, in vitro - (Peer Reviewed Journal)
Poole, T.L., Benjamin, R., Genovese, K.J., Nisbet, D.J. 2021. Methylsulfonylmethane exhibits bacteriostatic inhibition of vancomycin resistant Enterococcus faecium, in vitro. Microbial Drug Resistance. 27(1):13-17. https://doi.org/10.1089/mdr.2019.0454.

Supplementing chestnut tannins in the broiler diet mediate a metabolic phenotype of the ceca - (Peer Reviewed Journal)
Lee, A., Dal Pont, G., Farnell, M.B., Jarvis, S., Battaglia, M., Arsenault, R.J., Kogut, M.H. 2021. Supplementing chestnut tannins in the broiler diet mediate a metabolic phenotype of the ceca. Poultry Science. 100(1):47-54. https://doi.org/10.1016/j.psj.2020.09.085.

Potential replacements for antibiotic growth promoters in poultry: Interactions at the gut level and their impact on host immunity - (Peer Reviewed Journal)
Swaggerty, C.L., Bortoluzzi, C., Lee, A., Eyng, C., Dal Pont, G., Kogut, M.H. 2021. Potential replacements for antibiotic growth promoters in poultry: Interactions at the gut level and their impact on host immunity. Advances in Experimental Medicine and Biology. 1354:145-159. https://doi.org/10.1007/978-3-030-85686-1_8.

Oral treatment with ileal spores triggers immunometabolic shifts in chicken gut - (Peer Reviewed Journal)
Redweik, G.A., Kogut, M.H., Arsenault, R.J., Mellata, M. 2020. Oral treatment with ileal spores triggers immunometabolic shifts in chicken gut. Frontiers in Veterinary Science. 7: Article 629. https://doi.org/10.3389/fvets.2020.00629.

Dietary supplementation with a microencapsulated blend of organic acids and botanicals alters the kinome in the ileum and jejunum of Gallus gallus - (Peer Reviewed Journal)
Swaggerty, C.L., Arsenault, R.J., Johnson, C., Piva, A., Grilli, E. 2020. Dietary supplementation with a microencapsulated blend of organic acids and botanicals alters the kinome in the ileum and jejunum of Gallus gallus. PLoS One. 15(7):e0236950. https://doi.org/10.1371/journal.pone.0236950.

The effect of acid sanitizers on the microbiome of re-use water - (Peer Reviewed Journal)
Feye, K.M., Micchichi, A.C., Rubinelli, P.M., Knueven, C.J., Thompson, D.R., Kogut, M.H., Ricke, S.C. 2020. The effect of acid sanitizers on the microbiome of re-use water. Frontiers in Sustainable Food Systems. 4. Article 85. https://doi.org/10.3389/fsufs.2020.00085.

Probiotics for cultured freshwater fish - (Peer Reviewed Journal)
Melo-Bolívar, J.F., Ruiz-Pardo, R.Y., Hume, M.E., Sidjabat, H.E., Villamil-Diaz, L.M. 2020. Probiotics for cultured freshwater fish. Microbiology Australia. 41(2):105-108. https://doi.org/10.1071/MA20026.

Nitro-treatment of composted poultry litter; effects on Salmonella, E. coli and nitrogen metabolism - (Peer Reviewed Journal)
Ruiz-Barrera, O., Ontiveros-Magadan, M., Anderson, R.C., Byrd Ii, J.A., Hume, M.E., Latham, E.A., Nisbet, D.J., Arzola-Alvarez, C., Salinas-Chavira, J., Castillo-Castillo, Y. 2020. Nitro-treatment of composted poultry litter; effects on Salmonella, E. coli and nitrogen metabolism. Bioresource Technology. 310. Article 123459. https://doi.org/10.1016/j.biortech.2020.123459.

Synergistic effects of the ß-1,3 glucan paramylon and vitamin C on immunological responses of hybrid striped bass (Morone chrysops × M. saxatilis) were pronounced in vitro but more moderate in vivo - (Peer Reviewed Journal)
Yamamoto, F.Y., Castillo, S., De Cruz, C.R., Chen, K., Hume, M.E., Gatlin, D.M. 2020. Synergistic effects of the ß-1,3 glucan paramylon and vitamin C on immunological responses of hybrid striped bass (Morone chrysops × M. saxatilis) were pronounced in vitro but more moderate in vivo. Aquaculture. 526(2020). Article 735394. https://doi.org/10.1016/j.aquaculture.2020.735394.

A microencapsulated feed additive containing organic acids, thymol, and vanillin increases in vitro functional activity of peripheral blood leukocytes from broiler chicks - (Peer Reviewed Journal)
Swaggerty, C.L., He, L.H., Genovese, K.J., Callaway, T.R., Kogut, M.H., Piva, A., Grilli, E. 2020. A microencapsulated feed additive containing organic acids, thymol, and vanillin increases in vitro functional activity of peripheral blood leukocytes from broiler chicks. Poultry Science. 99(7):3428-3436. https://doi.org/10.1016/j.psj.2020.03.031.

Feeding of yeast cell wall extracts during a necrotic enteritis challenge enhances cell growth/survival and immune signaling in the jejunum of broiler chickens - (Peer Reviewed Journal)
Johnson, C.N., Hashim, M.M., Bailey, C.A., Byrd II, J.A., Kogut, M.H., Arsenault, R.J. 2020. Feeding of yeast cell wall extracts during a necrotic enteritis challenge enhances cell growth/survival and immune signaling in the jejunum of broiler chickens. Poultry Science. 99(6):2655-2966. https://doi.org/10.1016/j.psj.2020.03.012.

Tissue-, age- and dose-dependent changes in avian ß-defensin and LEAP2 mRNA abundance in the intestines of Salmonella Typhimurium challenged broilers - (Peer Reviewed Journal)
Garcia, J.S., Byrd II, J.A., Wong, E.A. 2020. Tissue-, age- and dose-dependent changes in avian ß-defensin and LEAP2 mRNA abundance in the intestines of Salmonella Typhimurium challenged broilers. Animal Biotechnology. 32(5), 637-645. https://doi.org/10.1080/10495398.2020.1738449.

Dietary factors as triggers of low-grade chronic intestinal inflammation in poultry - (Peer Reviewed Journal)
Dal Pont, G.C., Farnell, M., Farnell, Y., Kogut, M.H. 2020. Dietary factors as triggers of low-grade chronic intestinal inflammation in poultry. Microorganisms. 8(1). Article 139. https://doi.org/10.3390/microorganisms8010139.

Influence of organic and inorganic acids as used for poultry part dips on the emergence of spoilage organisms during a shelf-life study - (Abstract Only)

Different sources of PAA may exhibit different antimicrobial effects during poultry processing - (Abstract Only)

The reduction of pathogen load on Ross 708 broilers when using different sources of commercial peracetic acid sanitizers in a pilot processing plant - (Peer Reviewed Journal)
Feye, K.M., Dittoe, D.K., Shi, Z., Woitte, J.L., Owens, C.M., Kogut, M.H., Ricke, S.C. 2019. The reduction of pathogen load on Ross 708 broilers when using different sources of commercial peracetic acid sanitizers in a pilot processing plant. Microorganisms. 7(11):503. https://doi.org/10.3390/microorganisms7110503.

Influential factors on the composition of the conventionally raised broiler gastrointestinal microbiomes - (Peer Reviewed Journal)
Feye, K.M., Baxter, M.F., Tellez-Isaias, G., Kogut, M.H., Ricke, S.C. 2020. Influential factors on the composition of the conventionally raised broiler gastrointestinal microbiomes. Poultry Science. 99(2):653-659. https://doi.org/10.1016/j.psj.2019.12.013.

The future of monitoring poultry processing microbiology: A requirement for the future, best practices and avenues for success - (Peer Reviewed Journal)

Microbiome and pathogen interaction with the immune system - (Peer Reviewed Journal)
Kogut, M.H., Lee, A., Santin, E. 2020. Microbiome and pathogen interaction with the immune system. Poultry Science. 99(4):1906-1913. https://doi.org/10.1016/j.psj.2019.12.011.

Altered expression of lactate dehydrogenase and monocarboxylate transporter involved in lactate metabolism in broiler wooden breast - (Peer Reviewed Journal)
Zhao, D., Kogut, M.H., Genovese, K.J., Hsu, C., Lee, J., Farnell, Y.Z. 2020. Altered expression of lactate dehydrogenase and monocarboxylate transporter involved in lactate metabolism in broiler wooden breast. Poultry Science. 99(1):11-20. https://doi.org/10.3382/ps/pez572.

Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expressions - (Peer Reviewed Journal)
Ward, T.L., Weber, B.P., Mendoza, K.M., Danzeisen, J.L., Llop, K., Lang, K., Clayton, J.B., Grace, E., Brannon, J., Radovic, I., Beauclaire, M., Heisel, T.J., Knights, D., Cardona, C., Kogut, M.H., Johnson, C., Noll, S.L., Arsenault, R., Reed, K.M., Johnson, T.J. 2019. Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expressions. mBio. 10(5). Article e02171-19. https://doi.org/10.1128/mbio.02171-19.

How management practices within a poultry house during successive flock rotations change the structure of the soil microbiome - (Peer Reviewed Journal)
Crippen, T.L., Sheffield, C.L., Singh, B., Byrd, J.A., Beier, R.C. 2019. How management practices within a poultry house during successive flock rotations change the structure of the soil microbiome. Frontiers in Microbiology. 10:2100. https://doi.org/10.3389/fmicb.2019.02100.

Administration of a postbiotic causes immunomodulatory responses in broiler gut and reduces disease pathogenesis following challenge - (Peer Reviewed Journal)
Johnson, C.N., Kogut, M.H., Genovese, K.J., He, L.H., Kazemi, S., Arsenault, R.J. 2019. Administration of a postbiotic causes immunomodulatory responses in broiler gut and reduces disease pathogenesis following challenge. Microorganisms. 7(8):1-19. https://doi.org/10.3390/microorganisms7080268.

Agave inulin and oregano oil improve the broiler performance - (Peer Reviewed Journal)
Sanchez-Zamora, N., Silva-Vázquez, R., Rangel-Nava, Z.E., Hernandez-Martinez, C.A., Kawas-Garza, J.R., Hume, M.E., Herrera-Balandrano, D.D., Mendez-Zamora, G. 2019. Agave inulin and oregano oil improve the broiler performance. Ecosistemas y Recursos Agropecuarios. 6(18):523-534. https://doi.org/10.19136/era.a6n18.2197.

Genomic sequence analysis of the multidrug-resistance region of avian Salmonella enterica serovar Indiana strain MHYL - (Peer Reviewed Journal)
Lu, Y., Wen, Y., Hu, G., Liu, Y., Beier, R.C., Hou, X. 2019. Genomic sequence analysis of the multidrug-resistance region of avian Salmonella enterica serovar Indiana strain MHYL. Microorganisms. 7(8):1-10. https://doi.org/10.3390/microorganisms7080248.

Inhibition and interactions of Campylobacter jejuni from broiler chicken houses with organic acids - (Peer Reviewed Journal)
Beier, R.C., Byrd II, J.A., Caldwell, D.Y., Andrews, K., Crippen, T.L., Anderson, R.C., Nisbet, D.J. 2019. Inhibition and interactions of Campylobacter jejuni from broiler chicken houses with organic acids. Microorganisms. 7(8):1-18. https://doi.org/10.3390/microorganisms7080223.

Short communication: Preliminary differences identified in genes responsible for biofilm formation in poultry isolates of Salmonella enterica Heidelberg, Enteritidis, and Kentucky - (Peer Reviewed Journal)
Shi, Z., Dittoe, D.K., Feye, K.M., Kogut, M.H., Ricke, S.C. 2019. Short communication: Preliminary differences identified in genes responsible for biofilm formation in poultry isolates of Salmonella enterica Heidelberg, Enteritidis, and Kentucky. Microorganisms. 7(7):1-11. https://doi.org/10.3390/microorganisms7070196.

A historical review on antibiotic resistance of foodborne Campylobacter - (Peer Reviewed Journal)
Yang, Y., Feye, K.M., Shi, Z., Pavlidis, H.O., Kogut, M.H., Ashworth, A.J., Ricke, S. 2019. A historical review on antibiotic resistance of foodborne Campylobacter. Frontiers in Microbiology. 10:1-8. https://doi.org/10.3389/fmicb.2019.01509.

Establishment and characterization of a competitive exclusion bacterial culture derived from Nile tilapia (Oreochromis niloticus) gut microbiomes showing antibacterial activity against pathogenic Streptococcus agalactiae - (Peer Reviewed Journal)
Melo-Bolívar, J.F., Ruiz-Pardo, R.Y., Hume, M.E., Nisbet, D.J., Rodríguez-Villamizar, F., Alzate, J.F., Junca, H., Villamil-Diaz, L.M. 2019. Establishment and characterization of a competitive exclusion bacterial culture derived from Nile tilapia (Oreochromis niloticus) gut microbiomes showing antibacterial activity against pathogenic Streptococcus agalactiae. PLoS One. 14(5):e0215375. https://doi.org/10.1371/journal.pone.0215375.

Effects of Colombian oregano essential oil (Lippia origanoides Kunth) and Eimeria species on broiler production and cecal microbiota - (Peer Reviewed Journal)
Betancourt, L., Hume, M.E., Rodríguez, F., Nisbet, D.J., Sohail, M.U., Afanador-Tellez, G. 2019. Effects of Colombian oregano essential oil (Lippia origanoides Kunth) and Eimeria species on broiler production and cecal microbiota. Poultry Science. https://doi.org/10.3382/ps/pez193.

Modulation of the immune response to improve health and reduce foodborne pathogens in poultry - (Peer Reviewed Journal)
Swaggerty, C.L., Callaway, T.R., Kogut, M.H., Piva, A., Grilli, E. 2019. Modulation of the immune response to improve health and reduce foodborne pathogens in poultry. Microorganisms. 7(3):65. https://doi.org/10.3390/microorganisms7030065.

Mexican oregano essential oils given in drinking water on performance, carcass traits, and meat quality of broilers - (Peer Reviewed Journal)
Hernández-Coronado, A.C., Silva-Vázquez, R., Rangel Nava, Z.E., Hernández-Martínez, C.A., Kawas-Garza, J.R., Hume, M.E., Méndez-Zamora, G. 2019. Mexican oregano essential oils given in drinking water on performance, carcass traits, and meat quality of broilers. Poultry Science. 98(7):3050-3058. https://doi.org/10.3382/ps/pez094.

Inhibition of calmodulin increases intracellular survival of Salmonella in chicken macrophage cells - (Peer Reviewed Journal)
He, L.H., Arsenault, R.J., Genovese, K.J., Swaggerty, C.L., Johnson, C., Nisbet, D.J., Kogut, M.H. 2019. Inhibition of calmodulin increases intracellular survival of Salmonella in chicken macrophage cells. Veterinary Microbiology. 232:156-161. https://doi.org/10.1016/j.vetmic.2019.02.013.

Advances in vaccines for controlling foodborne Salmonella spp. in poultry - (Book / Chapter)
Kogut, M.H., Santin, E. 2019. Advances in vaccines for controlling foodborne Salmonella spp. in poultry. In: Venkitanarayanan K., Thakur S., Ricke S., editors. Food Safety in Poultry Meat Production. Cham, Switzerland: Springer Nature Switzerland. p. 161-189.

Deciphering desirable immune responses from disease models with resistant and susceptible chickens - (Peer Reviewed Journal)
Broom, L.J., Kogut, M.H. 2019. Deciphering desirable immune responses from disease models with resistant and susceptible chickens. Poultry Science. 98(4):1634-1642. https://doi.org/10.3382/ps/pey535.

The effect of microbiome modulation on the intestinal health of poultry - (Peer Reviewed Journal)
Kogut, M.H. 2019. The effect of microbiome modulation on the intestinal health of poultry. Animal Feed Science And Technology. 250:32-40. https://doi.org/10.1016/j.anifeedsci.2018.10.008.

Performance, carcass variables, and meat quality of broilers supplemented with dietary Mexican oregano oil - (Peer Reviewed Journal)
Cázares-Gallegos, R., Silva-Vazquez, R., Hernandez-Martinez, C.A., Gutierrez-Soto, J.G., Kawas-Garza, J.R., Hume, M.E., Mendez-Zamora, G. 2019. Performance, carcass variables, and meat quality of broilers supplemented with dietary Mexican oregano oil. Brazilian Journal of Poultry Science. 21(1):1-10. https://doi.org/10.1590/1806-9061-2018-0801.

The role of the gut microbiome in shaping the immune system of chickens - (Peer Reviewed Journal)
Broom, L.J., Kogut, M.H. 2018. The role of the gut microbiome in shaping the immune system of chickens. Veterinary Immunology and Immunopathology. 204:44-51. https://doi.org/10.1016/j.vetimm.2018.10.002.

Evaluation of antimicrobial action of chitosan and acetic acid on broiler cecal bacterial profiles in anaerobic cultures inoculated with Salmonella Typhimurium - (Peer Reviewed Journal)
Sohail, M.U., Hume, M.E. 2019. Evaluation of antimicrobial action of chitosan and acetic acid on broiler cecal bacterial profiles in anaerobic cultures inoculated with Salmonella Typhimurium. Journal of Applied Poultry Research. 28(1):176-183. https://doi.org/10.3382/japr/pfy061.

Gut health in poultry and considerations of additives as alternatives to antibiotics - (Peer Reviewed Journal)
Broom, L.J., Kogut, M.H. 2018. Gut health in poultry and considerations of additives as alternatives to antibiotics. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources. 13(038):1-6. https://doi.org/10.1079/PAVSNNR201813038.

Mechanisms of persistence, survival, and transmission of bacterial foodborne pathogens in production animals - (Book / Chapter)
Swaggerty, C.L., Genovese, K.J., He, L.H., Byrd II, J.A., Kogut, M.H. 2018. Mechanisms of persistence, survival, and transmission of bacterial foodborne pathogens in production animals. Lausanne: Frontiers Media. 130 p. https://doi.org/10.3389/978-2-88945-545-4.

The effect of ß-1,3-glucan derived from Euglena gracilis (Algamune™) on the innate immunological responses of Nile tilapia (Oreochromis niloticus L.) - (Peer Reviewed Journal)
Yamamoto, F.Y., Sutili, F.J., Hume, M.E., Gatlin III, D.M. 2018. The effect of ß-1,3-glucan derived from Euglena gracilis (Algamune™) on the innate immunological responses of Nile tilapia (Oreochromis niloticus L.). Journal of Fish Diseases. 41(10):1579-1588. https://doi.org/10.1111/jfd.12871.

Editorial: Mechanisms of persistence, survival, and transmission of bacterial foodborne pathogens in production animals - (Peer Reviewed Journal)
Swaggerty, C.L., Genovese, K.J., He, L.H., Byrd, J.A., Kogut, M.H. 2018. Editorial: Mechanisms of persistence, survival, and transmission of bacterial foodborne pathogens in production animals. Frontiers in Veterinary Science. 5: Article 139. https://doi.org/10.3389/fvets.2018.00139.

Mitogen-activated protein kinase p38, not ERK1/2 and JNK, regulates nitric oxide response to Salmonella Heidelberg infection in chicken macrophage HD11 cells - (Peer Reviewed Journal)
He, L.H., Genovese, K.J., Swaggerty, C.L., Nisbet, D.J., Kogut, M.H. 2018. Mitogen-activated protein kinase p38, not ERK1/2 and JNK, regulates nitric oxide response to Salmonella Heidelberg infection in chicken macrophage HD11 cells. International Journal of Bacteriology & Parasitology. 2018(2):1-5. doi: 10.29011/IJBP-107.000007.

Red drum Sciaenops ocellatus growth and expression of bile salt-dependent lipase in response to increasing dietary lipid supplementation - (Peer Reviewed Journal)
González-Félix, M.L., Gatlin, D.M., Perez-Velazquez, M., Webb, K., García-Ortega, A., Hume, M.E. 2018. Red drum Sciaenops ocellatus growth and expression of bile salt-dependent lipase in response to increasing dietary lipid supplementation. Fish Physiology and Biochemistry Journal. 44(5):1319-1331. https://doi.org/10.1007/s10695-018-0523-z.

ß-1,3 glucan derived from Euglena gracilis and Algamune™ enhances innate immune responses of red drum (Sciaenops ocellatus L.) - (Peer Reviewed Journal)
Yamamoto, F.Y., Yin, F., Rossi Jr, W., Hume, M.E., Gatlin III, D.M. 2018. ß-1,3 glucan derived from Euglena gracilis and Algamune™ enhances innate immune responses of red drum (Sciaenops ocellatus L.). Fish and Shellfish Immunology. 77:273-279. https://doi.org/10.1016/j.fsi.2018.04.003.

Gut immunity: Its development and reasons and opportunities for modulation in monogastric production animals - (Peer Reviewed Journal)
Broom, L., Kogut, M.H. 2018. Gut immunity: Its development and reasons and opportunities for modulation in monogastric production animals. Animal Health Research Reviews. 19(1):46-52. https://doi.org/10.1017/S1466252318000026.

Effects of two sources of Mexican oregano oil on performance, blood profile, carcass variables, and meat of broilers - (Peer Reviewed Journal)
Silva-Vázquez, R., Duran-Meléndez, L.A., Hernández-Martínez, C.A., Gutiérrez-Soto, J.G., Hume, M.E., Méndez-Zamora, G. 2018. Effects of two sources of Mexican oregano oil on performance, blood profile, carcass variables, and meat of broilers. Revista Brasileira de Zootecnia. 47:e20170198. https://doi.org/10.1590/rbz4720170198.

Inflammatory phenotypes in the intestine of poultry: Not all inflammation is created equally - (Peer Reviewed Journal)
Kogut, M.H., Genovese, K.J., Swaggerty, C.L., He, L.H., Broom, L. 2018. Inflammatory phenotypes in the intestine of poultry: Not all inflammation is created equally. Poultry Science. 97(7):2339-2346. https://doi.org/10.3382/ps/pey087.

Larval digestion of different manure types by the black soldier fly (Diptera: Stratiomyidae) impacts associated volatile emissions - (Peer Reviewed Journal)
Beskin, K.V., Holcomb, C.D., Cammack, J.A., Crippen, T.L., Knap, A.H., Sweet, S.T., Tomberlin, J.K. 2018. Larval digestion of different manure types by the black soldier fly (Diptera: Stratiomyidae) impacts associated volatile emissions. Waste Management. 74:213-220. https://doi.org/10.1016/j.wasman.2018.01.019.

Temporal and spatial impact of human cadaver decomposition on soil bacterial and arthropod community structure and function - (Peer Reviewed Journal)
Singh, B., Minick, K.J., Strickland, M.S., Wickings, K., Crippen, T.L., Tarone, A.M., Benbow, E., Sufrin, N., Tomberlin, J.K., Pechal, J.L. 2018. Temporal and spatial impact of human cadaver decomposition on soil bacterial and arthropod community structure and function. Frontiers in Microbiology. 8(2616):1-12. https://doi.org/10.3389/fmicb.2017.02616.

Differential levels of cecal colonization by Salmonella Enteritidis in chickens triggers distinct immune kinome profiles - (Peer Reviewed Journal)
Swaggerty, C.L., Kogut, M.H., He, L.H., Genovese, K.J., Johnson, C., Arsenault, R.J. 2017. Differential levels of cecal colonization by Salmonella Enteritidis in chickens triggers distinct immune kinome profiles. Frontiers in Veterinary Science. 4(214):1-14. https://doi.org/10.3389/fvets.2017.00214.

Denaturing gradient gel electrophoresis-polymerase chain reaction comparison of chitosan effects on anaerobic cultures of broiler cecal bacteria and Salmonella Typhimurium - (Peer Reviewed Journal)
Hume, M.E., Sohail, M.U. 2018. Denaturing gradient gel electrophoresis-polymerase chain reaction comparison of chitosan effects on anaerobic cultures of broiler cecal bacteria and Salmonella Typhimurium. Foodborne Pathogens and Disease. 15(4):246-252. https://doi.org/10.1089/fpd.2017.2365.

Effect of inulin and pectin on physicochemical characteristics and emulsion stability of meat batters - (Peer Reviewed Journal)
Silva-Vazquez, R., Flores-Giron, E., Quintero-Ramos, A., Hume, M.E., Mendez-Zamora, G. 2018. Effect of inulin and pectin on physicochemical characteristics and emulsion stability of meat batters. CyTA-Journal of Food. 16(1):306-310. https://doi.org/10.1080/19476337.2017.1403490.

Influence of different yeast cell wall preparations and their components on performance and immune and metabolic pathways in Clostridium perfringens-challenged broiler chicks - (Peer Reviewed Journal)
Hashim, M.M., Arsenault, R.J., Byrd II, J.A., Kogut, M.H., Al-Ajeeli, M., Bailey, C.A. 2018. Influence of different yeast cell wall preparations and their components on performance and immune and metabolic pathways in Clostridium perfringens-challenged broiler chicks. Poultry Science. 97(1):203-210. https://doi.org/10.3382/ps/pex290.

The horizontal transfer of Salmonella between the lesser mealworm (Alphitobius diaperinus) and poultry manure - (Peer Reviewed Journal)
Crippen, T.L., Sheffield, C.L., Beier, R.C., Nisbet, D.J. 2018. The horizontal transfer of Salmonella between the lesser mealworm (Alphitobius diaperinus) and poultry manure. Zoonoses and Public Health. 65(1):e23-e33. https://doi.org/10.1111/zph.12404.

Advanced oxidation process sanitization of hatching eggs reduces Salmonella in broiler chicks - (Peer Reviewed Journal)
Rehkopf, A.C., Byrd II, J.A., Coufal, C.D., Duong, T. 2017. Advanced oxidation process sanitization of hatching eggs reduces Salmonella in broiler chicks. Poultry Science. 96(10):3709-3716. https://doi.org/10.3382/ps/pex166.

Nonconsumptive effects of predatory Chrysomya rufifacies (Diptera: Calliphoridae) larval cues on larval Cochliomyia macellaria (Diptera: Calliphoridae) growth and development - (Peer Reviewed Journal)
Flores, M., Crippen, T.L., Longnecker, M., Tomberlin, J.K. 2017. Nonconsumptive effects of predatory Chrysomya rufifacies (Diptera: Calliphoridae) larval cues on larval Cochliomyia macellaria (Diptera: Calliphoridae) growth and development. Journal of Medical Entomology. 54(5):1167-1174. https://doi.org/10.1093/jme/tjx104.

Evaluation of sterilized artificial diets for mass rearing the Lucilia sericata (Diptera: Calliphoridae) - (Peer Reviewed Journal)
Zheng, L., Crippen, T.L., Dabney, A., Gordy, A., Tomberlin, J.K. 2017. Evaluation of sterilized artificial diets for mass rearing the Lucilia sericata (Diptera: Calliphoridae). Journal of Medical Entomology. 54(5):1122-1128. https://doi.org/10.1093/jme/tjx091.

Genome sequence of a Providencia stuartii strain isolated from Lucilia sericata salivary glands - (Peer Reviewed Journal)
Yuan, Y., Zhang, Y., Fu, S., Crippen, T.L., Visi, D.K., Benbow, M.E., Allen, M.S., Tomberlin, J.K., Sze, S., Tarone, A.M. 2017. Genome sequence of a Providencia stuartii strain isolated from Lucilia sericata salivary glands. American Society for Microbiology, Genome Announcements. 5(17):e00250-17. https://doi.org/10.1128/genomeA.00250-17.

Nutrition of red drum, Sciaenops ocellatus L.: An additional evaluation of the effects of soya-based diets and supplemental prebiotic - (Peer Reviewed Journal)
Rossi, W., Ju, M., Hume, M.E., Tomasso, J.R., Gatlin, D.M. 2017. Nutrition of red drum, Sciaenops ocellatus L.: An additional evaluation of the effects of soya-based diets and supplemental prebiotic. Aquaculture Research. 48(10):5224-5234. https://doi.org/10.1111/are.13334.

Indole: An evolutionarily conserved influencer of behavior across kingdoms - (Review Article)
Tomberlin, J.K., Crippen, T.L., Wu, G., Griffin, A.S., Wood, T.K., Kilner, R.M. 2017. Indole: An evolutionarily conserved influencer of behavior across kingdoms. Bioessays. 39(2):1600203.

Effect of vancomycin, tylosin, and chlortetracycline on vancomycin-resistant Enterococcus faecium colonization of broiler chickens during grow-out - (Peer Reviewed Journal)
Hume, M.E., Donskey, C.J. 2017. Effect of vancomycin, tylosin, and chlortetracycline on vancomycin-resistant Enterococcus faecium colonization of broiler chickens during grow-out. Foodborne Pathogens and Disease. 14(4): 231-237. doi: 10.1089/fpd.2016.2217.

The identification of fungi collected from the ceca of commercial poultry - (Peer Reviewed Journal)
Byrd, J.A., Caldwell, D.Y., Nisbet, D.J. 2017. The identification of fungi collected from the ceca of commercial poultry. Poultry Science. 96(7):2360-2365.

Filth fly transmission of Escherichia coli O157:H7 and Salmonella enterica to lettuce, Lactuca sativa - (Peer Reviewed Journal)
Pace, R.C., Talley, J.L., Crippen, T.L., Wayadande, A.C. 2017. Filth fly transmission of Escherichia coli O157:H7 and Salmonella enterica to lettuce, Lactuca sativa. Annals of the Entomological Society of America. 110(1):83-89.

Interkingdom cues by bacteria associated with conspecific and heterospecific eggs of Cochliomyia macellaria and Chrysomya rufifacies (Diptera: Calliphoridae) potentially govern succession on carrion - (Peer Reviewed Journal)
Brundage, A.L., Crippen, T.L., Singh, B., Benbow, E., Liu, W., Tarone, A.M., Wood, T.K., Tomberlin, J.K. 2017. Interkingdom cues by bacteria associated with conspecific and heterospecific eggs of Cochliomyia macellaria and Chrysomya rufifacies (Diptera: Calliphoridae) potentially govern succession on carrion. Annals of the Entomological Society of America. 110(1):73-82. doi:10.1093/aesa/saw090.

A review of bacterial interactions with blow flies (Diptera: Calliphoridae) of medical, veterinary, and forensic importance - (Review Article)
Tomberlin, J.K., Crippen, T.L., Tarone, A.M., Chaudhury, M.F., Singh, B., Cammack, J.A., Meisel, R. 2017. A review of bacterial interactions with blow flies (Diptera: Calliphoridae) of medical, veterinary, and forensic importance. Annals of the Entomological Society of America. 110(1):19-36.

An introduction to metagenomic data generation, analysis, visualization, and interpretation - (Book / Chapter)
Singh, B., Crippen, T.L., Tomberlin, J.K. 2017. An introduction to metagenomic data generation, analysis, visualization, and interpretation. In: Carter, D.O., Tomberlin, J.K., Benbow, M.E., Metcalf, J.L., editors. Forensic Science in Focus: Forensic Microbiology. 1st edition. New York, NY: John Wiley & Sons Ltd. p. 94-126.

Sampling methods and data generation - (Book / Chapter)
Pechal, J.L., Benbow, M.E., Crippen, T.L. 2017. Sampling methods and data generation. In: Carter, D.O., Tomberlin, J.K., Benbow, M.E., Metcalf, J.L., editors. Forensic Science in Focus: Forensic Microbiology. 1st edition. New York, NY: John Wiley & Sons Ltd. p. 72-93.

Genome sequence of a Proteus mirabilis strain isolated from the salivary glands of larval Lucilia sericata - (Peer Reviewed Journal)
Yuan, Y., Zhang, Y., Fu, S., Crippen, T.L., Visi, D.K., Benbow, M.E., Allen, M.S., Tomberlin, J.K., Sze, S-H., Tarone, A.M. 2016. Genome sequence of a Proteus mirabilis strain isolated from the salivary glands of larval Lucilia sericata. American Society for Microbiology, Genome Announcements. 4(4):e000672-16. doi:10.1128/genomeA.00672-16.

Mexican oregano (Lippia berlandieri Schauer) oil on turkey slaughter quality - (Peer Reviewed Journal)
Silva-Vazquez, R., Garcia-Macias, J.A., Duran-Melendez, L.A., Hume, M.E., Mendez-Zamora, G. 2017. Mexican oregano (Lippia berlandieri Schauer) oil on turkey slaughter quality. Ecosistemas y Recursos Agropecuarios. 4(10):177-182.

Inhibitory effect of supernatants from a competitive exclusion culture over growth of some intestinal pathogens - (Peer Reviewed Journal)
Aguilar-Rivera, C., Hume, M.E., Klotz-Ceberio, B.F. 2016. Inhibitory effect of supernatants from a competitive exclusion culture over growth of some intestinal pathogens. Revista Mexicana de Ingenieria Quimica. 15(2):379-389.

Multi-microbial compounds eliminate or reduce Salmonella Typhimurium from one-third of poultry liter samples within 8 days - (Peer Reviewed Journal)
Sheffield, C.L., Crippen, T.L., Beier, R.C. 2018. Multi-microbial compounds eliminate or reduce Salmonella Typhimurium from one-third of poultry liter samples within 8 days. Research Journal of Poultry Sciences. 11(1), 5-8. https://doi.org/10.36478/rjpscience.2018.5.8.

Poultry litter and the environment: Physiochemical properties of litter and soil during successive flock rotations and after remote site deposition - (Peer Reviewed Journal)
Crippen, T.L., Sheffield, C.L., Byrd, J.A., Esquivel, J.F., Beier, R.C., Yeater, K.M. 2016. Poultry litter and the environment: Physiochemical properties of litter and soil during successive flock rotations and after remote site deposition. Science of the Total Environment. 553:650-661.