LEMAY LAB

• Publications

  • (Clicking on the reprint icon will take you to the publication reprint.)
  • Dietary fiber to starch ratio affects bovine milk Oligosaccharide profiles-(Peer Reviewed Journal)
    
    
  • Unique transcriptomic changes underlie hormonal interactions during mammary histomorphogenesis in female pigs -(Peer Reviewed Journal)
    Trott, J.F., Schennink, A., Horigan, K.C., Lemay, D.G., Cohen, J.R., Famula, T.R., Dragon, J.A., Hovey, R.C. 2021. Unique transcriptomic changes underlie hormonal interactions during mammary histomorphogenesis in female pigs. Endocrinology. 2021;bqab256. https://doi.org/10.1210/endocr/bqab256.
    
  • Machine learning identifies stool pH as predictor of bone mineral density in healthy multiethnic US adults -(Peer Reviewed Journal)
    Chin, E.L., Van Loan, M., Spearman, S., Bonnel, E.L., Laugero, K.D., Stephensen, C.B., Lemay, D.G. 2021. Machine learning identifies stool pH as predictor of bone mineral density in healthy multiethnic US adults. Journal of Nutrition. 151(11):3379-3390. https://doi.org/10.1093/jn/nxab266.
    
  • Effect of manual data cleaning on nutrient intakes using the automated self-administered 24-hour dietary assessment tool (ASA24) -(Abstract Only)
    Bouzid, Y.Y., Arsenault, J.E., Bonnel, E.L., Cervantes, E., Kan, A., Burnett, D.J., Keim, N.L., Lemay, D.G., Stephensen, C.B. 2021. Effect of manual data cleaning on nutrient intakes using the automated self-administered 24-hour dietary assessment tool (ASA24) . Current Developments in Nutrition. 5/3. https://doi.org/10.1093/cdn/nzab005.
    
  • Manual data cleaning modifications can significantly change nutrient values recorded in automated self-administered 24-hour recalls (ASA24)-(Peer Reviewed Journal)
    
    
  • Technician-scored stool consistency spans the full range of the bristol scale in a healthy US population and differs by diet and chronic stress load -(Peer Reviewed Journal)
    Lemay, D.G., Baldiviez, L.M., Chin, E.L., Spearman, S., Cervantes, E., Woodhouse, L.R., Keim, N.L., Stephensen, C.B., Laugero, K.D. 2021. Technician-scored stool consistency spans the full range of the Bristol scale in a healthy US population and differs by diet and chronic stress load. Journal of Nutrition. 151(6):1443-1452. https://doi.org/10.1093/jn/nxab019.
    
  • Association of the lactase persistence haplotype block with disease risk in populations of european descent -(Peer Reviewed Journal)
    Joslin, S.E., Durbin-Johnson, B.P., Britton, M.T., Settles, M.L., Korf, I., Lemay, D.G. 2020. Association of the lactase persistence haplotype block with disease risk in populations of European descent. Frontiers in Genetics. 11. Article: 558762. https://doi.org/10.3389/fgene.2020.558762.
    
  • Association of estimated daily lactose consumption, lactase persistence genotype (rs4988235), and gut microbiota in healthy U.S. adults -(Abstract Only)
    Kable, M.E., Chin, E.L., Huang, L., Stephensen, C.B., Lemay, D.G. 2020. Association of estimated daily lactose consumption, lactase persistence genotype (rs4988235), and gut microbiota in healthy U.S. adults. Current Developments in Nutrition. 4/2/1566. https://doi.org/10.1093/cdn/nzaa062_023.
    
  • Reservoirs of antimicrobial resistance genes in retail raw milk -(Peer Reviewed Journal)
    Liu, J., Zhu, Y., Jay-Russell, M., Lemay, D.G., Mills, D.A. 2020. Reservoirs of antimicrobial resistance genes in retail raw milk. Microbiome. 8(99). https://doi.org/10.1186/s40168-020-00861-6.
    
  • Harnessing AI to transform agriculture and inform agricultural research -(Peer Reviewed Journal)
    Peters, D.C., Rivers, A.R., Hatfield, J.L., Lemay, D.G., Liu, S.Y., Basso, B. 2020. Harnessing AI to transform agriculture and inform agricultural research. IEEE IT Professional. 22(3):16-21. https://doi.org/10.1109/MITP.2020.2986124.
    
  • Multimodal AI to improve agriculture -(Peer Reviewed Journal)
    Parr, C.J, Lemay, D.G., Owen, C.L., Woodward Greene, M.J., Sun, J. 2021. Multimodal AI to improve agriculture. IEEE IT Professional. 23(3):53-57. https://doi.org/10.1109/MITP.2020.2986122.
    
  • Estimated daily Lactose consumption in healthy U.S. adults in relation to lactase persistence genotype (rs4988235)-(Abstract Only)
    
    
  • Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes -(Peer Reviewed Journal)
    Treiber, M.L., Taft, D.H., Korf, I., Mills, D.A., Lemay, D.G. 2020. Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes. BMC Bioinformatics. 21(74). https://doi.org/10.1186/s12859-020-3416-y.
    
  • Fecal metatranscriptomics and glycomics suggests that bovine milk oligosaccharides are fully utilized by healthy adults -(Peer Reviewed Journal)
    Westreich, S.T., Salcedo, J., Durbin-Johnson, B., Smilowitz, J.T., Korf, I., Mills, D.A., Daniela, B., Lemay, D.G. 2020. Fecal metatranscriptomics and glycomics suggests that bovine milk oligosaccharides are fully utilized by healthy adults. Journal of Nutritional Biochemistry. 79. https://doi.org/10.1016/j.jnutbio.2020.108340.
    
  • Nutrient estimation from 24-hour food recalls using machine learning and database mapping: a case study with lactose -(Peer Reviewed Journal)
    Chin, E.L., Simmons, G., Bouzid, Y.Y., Kan, A., Burnett, D.J., Tagkopoulos, L., Lemay, D.G. 2019. Nutrient estimation from 24-hour food recalls using machine learning and database mapping: a case study with lactose. Nutrients. 11(12):3045. https://doi.org/10.3390/nu11123045.
    
  • Association of lactase persistence genotypes (rs4988235) and ethnicity with dairy intake in a healthy U.S. population -(Peer Reviewed Journal)
    Chin, E.L., Huang, L., Bouzid, Y.Y., Kirschke, C.P., Durbin-Johnson, B., Baldiviez, L.M., Bonnel, E.L., Keim, N.L., Korf, I., Stephensen, C.B., Lemay, D.G. 2019. Association of lactase persistence genotypes (rs4988235) and ethnicity with dairy intake in a healthy U.S. population. Nutrients. 11(8):1860. https://doi.org/10.3390/nu11081860.
    
  • The fecal resistome of dairy cattle is associated with diet during nursing -(Peer Reviewed Journal)
    Liu, J., Taft, D.H., Gomez, M.X., Johnson, D., Treiber, M.L., Lemay, D.G., Depeters, E., Mills, D.A. 2019. The fecal resistome of dairy cattle is associated with diet during nursing. Nature Communications. https://doi.org/10.1038/s41467-019-12111-x.
    
  • Temporal changes in postprandial blood transcriptomes reveal subject-specific pattern of expression of innate immunity genes after a high-fat meal -(Peer Reviewed Journal)
    Lemay, D.G., Huang, S., Huang, L., Alkan, Z., Kirschke, C.P., Burnett, D.J., Wang, Y., Hwang, D.H. 2019. Temporal changes in postprandial blood transcriptomes reveal subject-specific pattern of expression of innate immunity genes after a high-fat meal. Journal of Nutritional Biochemistry. 72:108209. https://doi.org/10.1016/j.jnutbio.2019.06.007.
    
  • Fecal metatranscriptomics of macaques with idiopathic chronic diarrhea reveals altered mucin degradation and fucose utilization -(Peer Reviewed Journal)
    Westreich, S.T., Ardeshir, A., Alkan, Z., Kable, M.E., Korf, I., Lemay, D.G. 2019. Fecal metatranscriptomics of macaques with idiopathic chronic diarrhea reveals altered mucin degradation and fucose utilization. BMC Microbiome. 7:41. https://doi.org/10.1186/s40168-019-0664-z.
    
  • Pilot study of probiotic/colostrum supplementation on gut function in children with autism and gastrointestinal symptoms -(Peer Reviewed Journal)
    Sanctuary, M., Kain, J., Chen, S., Kalentra, K., Lemay, D.G., Rose, D., Yang, H., Tancredi, D.J., German, B.J., Slupsky, C., Ashwood, P., Mills, D., Smilowtz, J.T., Angkustsiri, K. 2019. Pilot study of probiotic/colostrum supplementation on gut function in children with autism and gastrointestinal symptoms. PLoS One. 14(1):1-30. https://doi.org/10.1371/journal.pone.0210064.
    
  • The collaborative effect of scientific meetings: a study of the international milk genomics consortium -(Peer Reviewed Journal)
    Kwok, E., Porter, M., Korf, I., Pasin, G., German, B.J., Lemay, D.G. 2018. The collaborative effect of scientific meetings: a study of the international milk genomics consortium. PLoS One. 10.1371. https://doi.org/10.1371/journal.pone.0201637.
    
  • SAMSA2: a standalone metatranscriptome analysis pipeline -(Peer Reviewed Journal)
    Westreich, S.T., Treiber, M.L., Mills, D.A., Lemay, D.G. 2018. SAMSA2: a standalone metatranscriptome analysis pipeline. BMC Bioinformatics. 19:175. https://doi.org/10.1186/s12859-018-2189-z.
    
  • The transcriptome of estrogen-independent mammary growth reveals that not all mammary glands are created equally-(Peer Reviewed Journal)
    Berryhill, G.E., Lemay, D.G., Trott, J.F., Aimo, L., Lock, A.L., Hovey, R.C. 2017. The transcriptome of estrogen-independent mammary growth reveals that not all mammary glands are created equally. Endocrinology. doi: 10.1210/en.2017-00395.
    
  • 21st century toolkit for optimizing population health through precision nutrition-()
    O'Sullivan, A., Henrick, B., Dixon, B., Barile, D., Zivkovic, A., Smilowitz, L., Lemay, D.G., Martin, W., German, B.J., Elizabeth, S. 2017. 21st century toolkit for optimizing population health through precision nutrition. Critical Reviews in Food Science and Nutrition. 57/45.
    
  • Using metatranscriptomics to determine effects of dietary supplementation with bovine milk oligosaccharides in healthy adults-(Abstract Only)
    Westreich, S.T., Barile, D., Salcedo, J., Mills, D.A., Smilowitz, J.T., Korf, I., Lemay, D.G. 2017. Using metatranscriptomics to determine effects of dietary supplementation with bovine milk oligosaccharides in healthy adults. Experimental Biology. 31/940.
    
  • The metatranscriptome of the rhesus macaque: investigating potential causes of idiopathic chronic diarrhea-(Abstract Only)
    Westreich, S.T., Ardeshir, A., Kable, M.E., Korf, I., Lemay, D.G. 2016. The metatranscriptome of the rhesus macaque: investigating potential causes of idiopathic chronic diarrhea. Experimental Biology. 31/650.
    

• Projects

  WHNRC Fiber Intervention Study: Dietary Assessment Cooperative Agreement (A)   Accession Number:438315

  Impact of Diet on Intestinal Microbiota, Gut Health and Immune Function In-House Appropriated (D)   Accession Number:432895

  AI Institute for Next Generation Food Systems Reimbursable Cooperative Agreement (R)   Accession Number:438876

  Valorization of Dairy Sidestreams to Fight Calcium Deficits in Postmenopausal Women Reimbursable Cooperative Agreement (R)   Accession Number:437629

  Extraction and Assessment of Milk Cell RNA in MILQ Samples Non-Assistance Cooperative Agreement (S)   Accession Number:438868

  Health Promoting Roles of Food Bio-Active Phenolic Compounds on Obesity-Altered Metabolic Functions and Physiology Non-Assistance Cooperative Agreement (S)   Accession Number:435078

  Assessment of Antimicrobial Resistance Genes in Human Fecal Samples Non-Assistance Cooperative Agreement (S)   Accession Number:436885

  Mothers, Infants and Lactation Quality-Extra Analyses (MILQ II) Project II Trust Fund Cooperative Agreement (T)   Accession Number:437095

  Microbial Taxa and Function in Lactase Non-Persisters: Understanding How to Personalize Dairy Products for a Diverse California population Trust Fund Cooperative Agreement (T)   Accession Number:441541

• ARS News Articles

  	Study Gives Insight into Diet, Gut Bacteria and Chronic Diarrhea
  	Diets High in Fiber Associated with Less Antibiotic Resistance in Gut Bacteria
  	Humans More Unique than Expected When It Comes to Digesting Fatty Meals