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United States Department of Agriculture

Agricultural Research Service

Research Project: Small Grains Database and Bioinformatics Resources

Location: Crop Improvement and Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

GSP: A web-based platform for designing genome-specific primers in polyploids - (Peer Reviewed Journal)
Wang, Y., Tiwari, T., Coleman-Derr, D.A., Rawda, N., Gill, B., Huo, N., You, F., Gu, Y.Q. 2016. GSP: A web-based platform for designing genome-specific primers in polyploids. Bioinformatics. doi: 10.1093/bioinformatics/btw/34.

WheatExp: an RNA-seq expression database for polypoid wheat - (Peer Reviewed Journal)
Pearce, S., Vazquez-Cross, H., Herin, S.Y., Hane, D., Wang, Y., Gu, Y.Q., Dubcovsky, J. 2015. WheatExp: an RNA-seq expression database for polypoid wheat. Biomed Central (BMC) Plant Biology. 15:299.

GrainGenes: Changing Times, Changing Databases, Digital Evolution. Reprint Icon - (Abstract Only)
Tobias, C.M., Lazo, G.R., Gu, Y.Q., Matthews, D.E. 2015. GrainGenes: Changing Times, Changing Databases, Digital Evolution. Meeting Abstract. scisoc.confex.com/scisoc/2015am/webprogram/Paper94726.html.

OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species - (Peer Reviewed Journal)
Wang, Y., Coleman-Derr, D.A., Chen, G., Gu, Y.Q. 2015. OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species. Nucleic Acids Research. 43(W1):W78-W84. doi: 10.1093/nar/gkv487.

Bacterial pathogen genomics: liberibacters from around the world. - (Abstract Only)

AIM: A comprehensive Arabidopsis Interactome Module database and related interologs in plants - (Peer Reviewed Journal)
Wang, Y., Thilmony, R.L., Zhao, Y., Chen, G., Gu, Y.Q. 2014. AIM: A comprehensive Arabidopsis Interactome Module database and related interologs in plants. Database: The Journal of Biological Databases and Curation. doi: 10.1093/database/bau117.

The Oat Newsletter: where we've been and where we're going - (Abstract Only)

De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum - (Peer Reviewed Journal)
Fox, S.E., Geniza, M., Hanumappa, M., Naihani, S., Sullivan, C., Preece, J., Tiwari, V.K., Elser, J., Leonard, J.M., Sage, A., Gresham, C., Kerhornou, A., Bolser, D., Mccarthy, F., Kersey, P., Lazo, G.R., Jaiswal, P. 2014. De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum. PLoS One. 9:E96855.

Net Venn - An integrated network analysis web platform for gene lists - (Peer Reviewed Journal)
Wang, Y., Thilmony, R.L., Gu, Y.Q. 2014. Net Venn - An integrated network analysis web platform for gene lists. Nucleic Acids Research. DOI: 10.1093/narlgku331.

Last Modified: 2/23/2016
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