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ARS Home » Southeast Area » Stuttgart, Arkansas » Dale Bumpers National Rice Research Center » People & Locations » Jeremy Edwards

Jeremy Edwards
Dale Bumpers National Rice Research Center
Research Geneticist (Plants)

Phone: (870) 672-6109
Fax: (870) 673-7581

2890 HWY 130 EAST
STUTTGART, AR 72160
Projects
Gene Discovery and Crop Design for Current and New Rice Management Practices and Market Opportunities
In-House Appropriated (D)
  Accession Number: 434318

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Enhancing the searchability, breeding utility and efficient management of germplasm accessions in the USDA-ARS rice collection - (Peer Reviewed Journal)
Vis/NIR hyperspectral imaging distinguishes sub-population, production environment, and physicochemical properties in rice. Reprint Icon - (Peer Reviewed Journal)
Barnaby, J.Y., Huggins, T.D., Lee, H., McClung, A.M., Pinson, S.R., Oh, M., Bauchan, G.R., Tarpley, L., Lee, K., Kim, M.S., Edwards, J. 2020. Vis/NIR hyperspectral imaging distinguishes sub-population, production environment, and physicochemical properties in rice.. Scientific Reports. https://doi.org/10.1038/s41598-020-65999-7.
Efficient accession management and characterization of the USDA-ARS rice germplasm collection through phenotyping and genotyping - (Abstract Only)
Huggins, T.D., McClung, A.M., Edwards, J., Jia, M.H., Bockelman, H.E., Ali, M.L., Eizenga, G.C. 2020. Efficient accession management and characterization of the USDA-ARS rice germplasm collection through phenotyping and genotyping. Meeting Abstract.
Genetic loci and agronomic traits impacting grain-arsenic concentrations revealed by GWA and biparental QTL analyses - (Proceedings)
Pinson, S.R., Edwards, J., Jackson, A.K., Heuschele, D.J., Barnaby, J.Y., Tarpley, L., Green, C.E., Codling, E.E., Smith, A.P. 2020. Genetic loci and agronomic traits impacting grain-arsenic concentrations revealed by GWA and biparental QTL analyses. Rice Technical Working Group Meeting Proceedings.
Differentiating sub-population, production environment and grain chalk by hyperspectral imaging - (Abstract Only)
Barnaby, J.Y., Huggins, T.D., Lee, H., McClung, A.M., Pinson, S.R., Oh, M., Bauchan, G.R., Tarpley, L., Lee, K., Kim, M.S., Edwards, J. 2020. Differentiating sub-population, production environment and grain chalk by hyperspectral imaging. Rice Technical Working Group Meeting Proceedings.
GWA mapping of cold tolerance traits at the seedling stage and validation in two rice biparental mapping populations - (Proceedings)
Identification of GWA-QTLs and germplasm useful for enhancing sheath blight resistance - (Proceedings)
Ricebase: A BreedBase implementation for rice with tools for gene discovery and marker development. - (Abstract Only)
SNP markers for panicle architecture and grain traits based on RDP1 GWA-QTL and available for japonica rice improvement - (Abstract Only)
Eizenga, G.C., Jackson, A.K., Jia, M.H., Edwards, J., McClung, A.M. 2019. SNP markers for panicle architecture and grain traits based on RDP1 GWA-QTL and available for japonica rice improvement. Abstract, Plant and Animal Genome Conference XXVIII, San Diego, California, January 11-15, 2020.
SNP markers for panicle architecture and grain traits developed from GWA-QTL and available for japonica rice improvement - (Abstract Only)
Eizenga, G.C., Jackson, A.K., Jia, M.H., Edwards, J., McClung, A.M. 2019. SNP markers for panicle architecture and grain traits developed from GWA-QTL and available for japonica rice improvement. Abstract, Plant and Animal Genome Conference XXVIII, San Diego, California, January 11-15, 2020.
Rice seedling cold stress QTL revealed by genome-wide association mapping and biparental mapping - (Abstract Only)
Eizenga, G.C., Shimoyama, N.S., Jackson, A.K., Edwards, J., Jessel, A.R., Schlappi, M.R. 2019. Rice seedling cold stress QTL revealed by genome-wide association mapping and biparental mapping. Abstract, Plant and Animal Genome Conference XXVIII, San Diego, California, January 11-15, 2020.
Phylogenetic origin and dispersal pattern of Taiwan weedy rice. Reprint Icon - (Peer Reviewed Journal)
Wu, D., Gealy, D.R., Jia, M.H., Edwards, J., Lai, M., McClung, A.M. 2019. Phylogenetic origin and dispersal pattern of Taiwan weedy rice. Pest Management Science. https://doi.org/10.1002/ps.5683.
Identification of superior alleles for seedling stage salt tolerance in the USDA rice mini-core collection Reprint Icon - (Peer Reviewed Journal)
Rohila, J.S., Edwards, J., Tran, G.D., Jackson, A.K., McClung, A.M. 2019. Identification of superior alleles for seedling stage salt tolerance in the USDA rice mini-core collection. Plants. https://doi.org/10.3390/plants8110472.
The genetic basis of cold stress tolerance in rice at the seedling stage identified in two independent high resolution genome-wide association mapping studies - (Abstract Only)
Eizenga, G.C., Shimoyama, N., Jackson, A.K., Edwards, J., Schlappi, M.R. 2019. The genetic basis of cold stress tolerance in rice at the seedling stage identified in two independent high resolution genome-wide association mapping studies. Abstract, ASA-CSSA-SSSA Annual Meeting, San Antonio, Texas, November 10-13, 2019.
Registration of the ‘Estrela/NSFTV199’ Rice Recombinant Inbred Line Mapping Population - (Peer Reviewed Journal)
Eizenga, G.C., Chen, M., Jia, M.H., Jackson, A.K., Edwards, J. 2019. Registration of the ‘Estrela/NSFTV199’ Rice Recombinant Inbred Line Mapping Population. Journal of Plant Registrations. 13:469-478.
BrAPI - An application programming interface for plant breeding applications Reprint Icon - (Peer Reviewed Journal)
Abbeloos, R., Bauchet, G., Benites-Alfaro, O., Birkett, C.L., Carceller, P., Costa, B.V., Edwards, J., Finkers, R., Guignon, V., Hok, P., Kilian, A., Laporte, M., Lebauer, D., Lyon, D., Marshall, D., Matthews, D.E., Milne, I., Morales, N., Mueller, L., Papoutsoglou, E., Pearce, B., Perez-Masias, I., Ramirez-Gonzalez, R.H., Rauback, S., Rife, T., Robbins, K., Rouard, M., Selby, P., Sempere, G., Shaw, P., Gordon, S., Uszynski, G., Verouden, M., Backlund, J.E., Salido, M.B., Cornut, G., Gao, S.Y., Patrick, K., Lagare, J.E., Lange, M., Larmande, P., Neveu, P., Prommier, C., Tahore, A., Sarma, C., Scholz, U., Mistry, N., Simon, R., Soldevilla, N., Tovar, C. 2019. BrAPI - An application programming interface for plant breeding applications. Bioinformatics. https://doi.org/10.1093/bioinformatics/btz190.
Functional characterization of a new class of rice blast resistance gene Ptr - (Abstract Only)
Jia, Y., Zhao, H., Wang, X., Minkenberg, B., Wheatley, M., Fan, J., Jia, M.H., Famoso, A., Edwards, J., Wamishe, Y., Valent, B., Want, G., Yang, Y. 2019. Functional characterization of a new class of rice blast resistance gene Ptr. Plant and Animal Genome Conference.
Genes and physiological factors associated with natural variation in rice arsenic concentrations - (Abstract Only)
Pinson, S.R., Edwards, J., Heuschele, J.D., Tarpley, L., Green, C.E., Smith, A.P. 2018. Genes and physiological factors associated with natural variation in rice arsenic concentrations. Meeting Abstract. Available: http://ricecongress2018.irri.org/sites/default/files/Genes%20and%20Physiological%20Factors%20Associated%20With%20Natural%20Variation%20in%20Rice%20Arsenic%20Concentrations.pdf
Identification of genetic diversity in the USDA-minicore and among selected Vietnamese rice accessions for seedling stage salt tolerance - (Abstract Only)
Rohila, J.S., Edwards, J., Gioi, T.D., McClung, A.M. 2018. Identification of genetic diversity in the USDA-minicore and among selected Vietnamese rice accessions for seedling stage salt tolerance. Meeting Abstract. 5th International Rice Congress, October 14-17, 2018, Marina Bay Sands, Singapore.
Validation of yield component traits identified by GWA mapping in a tropical japonica x tropical japonica rice mapping population Reprint Icon - (Peer Reviewed Journal)
Eizenga, G.C., Jia, M.H., Jackson, A.K., Boykin, D.L., Liakat, A.M., Shakiba, E., Tran, N.T., McCouch, S.R., Edwards, J. 2018. Validation of yield component traits identified by GWA mapping in a tropical japonica x tropical japonica rice mapping population. The Plant Genome. https://doi.org/10.3835/plantgenome2018.04.0021.
Identifying panicle architecture traits for rice improvement: a treasure hunt from genome-wide association studies to QTL validation, marker development and germplasm release - (Abstract Only)
Eizenga, G.C., Jackson, A.K., Jia, M.H., Edwards, J., McClung, A.M. 2018. Identifying panicle architecture traits for rice improvement: a treasure hunt from genome-wide association studies to QTL validation, marker development and germplasm release. Available: http://ricecongress2018.irri.org/conference-program.
The rice blast resistance gene Ptr encodes an atypical protein required for broad spectrum disease resistance Reprint Icon - (Peer Reviewed Journal)
Zhao, H., Wang, X., Jia, Y., Minkenberg, B., Wheatley, M., Fan, J., Jia, M.H., Famoso, A., Edwards, J., Wamishe, Y., Valent, B., Wang, G., Yang, Y. 2018. The rice blast resistance gene Ptr encodes an atypical protein required for broad spectrum disease resistance. Nature Communications. https://doi.org:10.1038/s41467-018-04369-4.
Association analysis of three diverse rice (Oryza sativa L.) germplasm collections for loci regulating grain quality traits Reprint Icon - (Peer Reviewed Journal)
Huggins, T.D., Chen, M., Fjellstrom, R.G., Jackson, A.K., McClung, A.M., Edwards, J. 2018. Association analysis of three diverse rice (Oryza sativa L.) germplasm collections for loci regulating grain quality traits. The Plant Genome. https://doi:10.3835/plantgenome2017.09.0085.
Association analysis and marker development for grain quality traits using USDA diverse rice germplasm collections - (Proceedings)
Edwards, J., Huggins, T.D., Chen, M., Jackson, A.K., McClung, A.M. 2018. Association analysis and marker development for grain quality traits using USDA diverse rice germplasm collections. Rice Technical Working Group Meeting Proceedings, February 19-22, 2018, San Diego, California. Electronic Publication
Developing molecular markers for use in marker-assisted selection from rice genome-wide association studies - (Proceedings)
Eizenga, G.C., Edwards, J., Jackson, A.K., Jia, M.H., Boykin, D.L. 2018. Developing molecular markers for use in marker-assisted selection from rice genome-wide association studies. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. p. 71-72.
A Reference Genome for US Rice - (Abstract Only)
Scheffler, B.E., Edwards, J., Stein, J., Ware, D., Vaughn, J.N., Schmutz, J., Peterson, D., Youngblood, C., Duke, M.V., Grimwood, J., Simpson, S.A., Mcclung, A.M. 2018. A Reference Genome for US Rice. Meeting Abstract. 37th Rice Technical Working Group.p.50.
Genetic and physiological relationships between grain arsenic and resistance to straighthead - (Proceedings)
Pinson, S.R., Edwards, J., Hueschele, D.J., Tarpley, L., Isbell, C., Green, C.E., Smith, A.P. 2018. Genetic and physiological relationships between grain arsenic and resistance to straighthead. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. Electronic Publication.
Rice diversity panels available through the genetic stocks oryza collection - (Proceedings)
McClung, A.M., Bernhardt, L., Edwards, J., Eizenga, G.C. 2018. Rice diversity panels available through the genetic stocks oryza collection. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. p. 80.
Increasing the efficiency and effectiveness of curation of the USDA-ARS world rice collection - (Proceedings)
McClung, A.M., Bockelman, H.E., Jia, M.H., Edwards, J. 2018. Increasing the efficiency and effectiveness of curation of the USDA-ARS world rice collection. Proceedings of 37th Rice Technical Working Group Meeting, February 19-22, 2018, Long Beach, California. p 79. Electronic Publication.
Dissection of genetic architecture of grain chalk using NIR spectroscopy - (Proceedings)
Barnaby, J.Y., Huggins, T.D., Lee, H., Oh, M., McClung, A.M., Pinson, S.R., Tarpley, L., Kim, M.S., Edwards, J. 2018. Dissection of genetic architecture of grain chalk using NIR spectroscopy. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. Electronic Publication.
Association analysis for loci regulating grain quality traits and marker development in the USDA rice collection - (Abstract Only)
Huggins, T.D., Edwards, J., Chen, M., Jackson, A.K., McClung, A.M. 2018. Association analysis for loci regulating grain quality traits and marker development in the USDA rice collection. Meeting Abstract. Phenome 2018 Conference, Tucson Arizona. Poster Number 46.
Association analysis using USDA diverse rice (Oryza sativa L.) germplasm collections to identify loci influencing grain quality traits - (Abstract Only)
Edwards, J., Huggins, T.D., Chen, M., Jackson, A.K., McClung, A.M. 2018. Association analysis using USDA diverse rice (Oryza sativa L.) germplasm collections to identify loci influencing grain quality traits. Plant and Animal Genome Conference XXVI Proceedings. P0913.
Genetic variation for domestication related traits revealed in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) x ancestral rice, O. nivara, mapping population Reprint Icon - (Peer Reviewed Journal)
Eizenga, G.C., Sanchez, P., Jackson, A.K., Edwards, J., Hurwitz, B.L., Wing, R.A., Kudrna, D. 2017. Genetic variation for domestication related traits revealed in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) x ancestral rice, O. nivara, mapping population. Molecular Breeding. https://doi.org:10.1007/s11032-017-0734-5.
GENOME WIDE ASSOCIATION STUDY DISSECTING GENETIC ARCHITECTURE OF GRAIN PHYSICOCHEMICAL TRAITS IN RICE - (Abstract Only)
Barnaby, J.Y., Huggins, T.D., McClung, A.M., Pinson, S.R., Edwards, J., Tarpley, L., Kim, M.S., Lee, H., Oh, M. 2017. Genome wide association study dissecting genetic architecture of grain physicochemical traits in rice. 34th Annual Mid Atlantic Plant Molecular Biology Society Conference . p.15. Program Booklet. http://wp.towson.edu/mapmbs/files/2017/08/34th-MAPMBS-program-2017-26ysoam.pdf
Validation of yield component traits identified by GWA mapping in a rice tropical japonica x tropical japonica RIL mapping population - (Abstract Only)
Eizenga, G.C., Jia, M.H., Jackson, A.K., Boykin, D.L., Ali, L.M., Shakiba, E., McCouch, S.R., Edwards, J.D. 2017. Validation of yield component traits identified by GWA mapping in a rice tropical japonica x tropical japonica RIL mapping population. Crop Science Society of America. https://scisoc.confex.com/scisoc/2017am/webprogram/Paper106518.html.
Phenotypic Evaluation of Weed-competitive Traits and Yield of Rice RILs from an Indica x Tropical Japonica Mapping Population - (Abstract Only)
Gealy, D.R., Pinson, S.R., Edwards, J. 2018. Phenotypic evaluation of weed-competitive traits and yield of rice RILs from an Indica x Tropical Japonica mapping population. Proceedings, 8th World Congress of Alleopathy, July 24-28, Marseille, France pg 39.
Genetic Architecture of Cold Tolerance in Rice (Oryza sativa) Determined through High Resolution Genome-Wide Analysis - (Peer Reviewed Journal)
Shakiba, E., Edwards, J., Jodari, F., Duke, S.E., Baldo, A.M., Korniliev, P., Mccouch, S.R., Eizenga, G.C. 2017. Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis. PLoS One. doi:10.1371/journalpone.0172133.
Fine mapping and introgressing qFIS1-2, a major QTL for kernel fissure resistance in rice (Oryza sativa L.) - (Peer Reviewed Journal)
Sater, H.M., Pinson, S.R.M., Moldenhauer, K., Siebenmorgen, T.J., Mason, R.E., Boyett, V.A., Edwards, J. 2017. Fine mapping and introgressing qFIS1-2, a major QTL for kernel fissure resistance in rice (Oryza sativa L.). Crop Science. doi:10.2135/cropsci2016.09.08213.
Genetic Architecture of Grain Chalk in Rice and Interactions with a Low Phytic Acid Locus - (Peer Reviewed Journal)
Edwards, J., Jackson, A.K., Bryant, R.J., McClung, A.M. 2017. Genetic architecture of grain chalk in rice and interactions with a low phytic acid locus. Field Crops Research. doi:10.1016/jc.fcr.2017.01.015.
Genetic variation for traits associated with domestication identified in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) x ancestral rice, O. nivara, mapping population - (Abstract Only)
Eizenga, G.C., Sanchez, P.L., Jackson, A.K., Edwards, J., Hurwitz, B.L., Wing, R.A., Kudrna, D. 2017. Genetic variation for traits associated with domestication identified in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) x ancestral rice, O. nivara, mapping population. Meeting Abstract. https://pag.confex.com/pag/xxv/meetingapp.cgi/Paper/24453.
Agronomic and physiological performance of Teqing x Lemont introgression rice (Oryza sativa L.) lines under limited irrigation system - (Abstract Only)
Rohila, J.S., Edwards, J., Zhao, H., McClung, A.M. 2017. Agronomic and physiological performance of Teqing x Lemont introgression rice (Oryza sativa L.) lines under limited irrigation system. Meeting Abstract. Proc.InterDrought-V Abstracts. p. 142.
Ricebase - a resource for rice breeding - (Abstract Only)
Edwards, J. 2017. Ricebase - a resource for rice breeding. Plant and Animal Genome. doi:10.106/j.fcr.2017.01.015.
Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees, and whole-genome-based data - (Peer Reviewed Journal)
Edwards, J., Baldo, A.M., Mueller, L.A. 2016. Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees, and whole-genome-based data. Database: The Journal of Biological Databases and Curation. 2016:baw107.
Transgressive variation for yield components measured throughout the growth cycle of Jefferson rice (Oryza sativa) x O. rufipogon introgression lines - (Peer Reviewed Journal)
Eizenga, G.C., Edwards, J., Yeater, K.M., McCouch, S.R., McClung, A.M. 2016. Transgressive variation for yield components measured throughout the growth cycle of Jefferson rice (Oryza sativa) x O. rufipogon introgression lines. Crop Science 56:1-12. DOI: 10.2135/cropsci2015.10.0603.
Dissecting cold tolerance in rice as revealed by association mapping - (Proceedings)
Shakiba, E., Jodari, F., Edwards, J., Baldo, A.M., Duke, S.E., Korniliev, P., McCouch, S.R., Eizenga, G.C. 2017. Dissecting cold tolerance in rice as revealed by association mapping. Proc. 36th Rice Technical Working Group Meeting Proceedings. pp. 64-65. 1-4 March 2016. CDROM.
Assessing foliar ascorbate content in the rice diversity panel 1 - (Proceedings)
Castillo-Gonzalez, S.E., Tibbs, M., Wilkie, A., Yeater, K.M., Edwards, J., McClung, A.M., Eizenga, G.C., Mccouch, S.R., Lorence, A. 2017. Assessing foliar ascorbate content in the rice diversity panel 1. Proc. 36th Rice Technical Working Group Meeting, Galveston, TX, p. 77. March 1-4, 2016. CDROM.
Free and open source tools for high throughput rice phenotyping and data storage - (Proceedings)
Edwards, J. 2017. Free and open source tools for high throughput rice phenotyping and data storage. Rice Technical Working Group Meeting Proceedings. March 1-4, 2016, Galveston, Texas. CDROM.
Genetic and environmental effects in the TeQing-into-Lemont (TIL) population under flooded and alternating wet-dry conditions - (Proceedings)
Edwards, J., Teaster, N.D., Scheffler, B.E., McClung, A.M. 2017. Genetic and environmental effects in the TeQing-into-Lemont (TIL) population under flooded and alternating wet-dry conditions. Proc. 36th Rice Technical Working Group Meeting, Galveston, TX, p. 69-70. March 1-4, 2016. CDROM.
Transgressive variation for yield components and dynamic traits in Jefferson (Oryza sativa) x O. rufipogon introgression lines - (Abstract Only)
Edwards, J., Eizenga, G.C., Yeater, K.M., McCouch, S.R., McClung, A.M. 2016. Transgressive variation for yield components and dynamic traits in Jefferson (Oryza sativa) x O. rufipogon introgression lines. Plant and Animal Genome Conference Proceedings. W012.
Unlocking the variation hidden in rice germplasm collections with genomics - (Abstract Only)
Eizenga, G.C., Shakiba, E., Edwards, J., Baldo, A.M., Korniliev, P., Mccouch, S.R. 2015. Unlocking the variation hidden in rice germplasm collections with genomics. Agronomy Society of America, Crop Science Society of America, Soil Science Society of America Meeting. . In: Abstracts, Annual Meeting, ASA-CSSA-SSSA, Minneapolis, MN 15-18 November 2015. Available at: https://scisoc.confex.com/scisoc/2015am/webprogram/Paper92079.html Paper 92079.
Genetic architecture of grain chalk in rice and interactions with a low phytic acid locus - (Abstract Only)
Mcclung, A.M., Jackson, A.K., Bryant, R.J., Edwards, J. 2015. Genetic architecture of grain chalk in rice and interactions with a low phytic acid locus. Agronomy Abstracts, paper number 94185, Minneapolis, MN, Nov. 15-18, 2015. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper94185.html. ASA-CSSA-SSSA Annual Meeting Abstracts. Poster Number 1035.
Greenhouse validation of yield component transgressive variation effects of wild Oryza species introgressions in an elite US rice cultivar - (Abstract Only)
Mcclung, A.M., Eizenga, G.C., Mccouch, S.M., Edwards, J. 2015. Greenhouse validation of yield component transgressive variation effects of wild Oryza species introgressions in an elite US rice cultivar. Agronomy Abstracts, paper number 94223, Minneapolis, MN, Nov. 15-18, 2015. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper94223.html. ASA-CSSA-SSSA Annual Meeting Abstracts. Poster Number 1037.
Rice breeding trends over 30 years for predicting response to climate change - (Abstract Only)
Mcclung, A.M., Wang, D.R., Woodard, J.D., Mccouch, S.M., Edwards, J. 2015. Rice breeding trends over 30 years for predicting response to climate change. Agronomy Abstracts, paper number 95665, Minneapolis, MN, Nov. 15-18, 2015. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper95665.html. ASA-CSSA-SSSA Annual Meeting Abstracts. Poster Number 601.
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