Long-Xi Yu
Plant Germplasm Introduction and Testing Research
Research Geneticist (Plants)
Phone: (509) 786-9259
Fax:
WASHINGTON STATE UNIV
PULLMAN,
WA
993500000
(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
Publications
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Bulked target capture sequencing identified numerous genetic loci associated with alfalfa growth vigor during inbreeding
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Identification of genetic loci associated with five agronomic traits in alfalfa using multi-environment trials
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Lin, S., Medina, C., Wang, G., Combs, D., Shewmaker, G., Fransen, S., Llewellyn, D., Norberg, S., Yu, L. 2023. Identification of genetic loci associated with five agronomic traits in alfalfa using multi-environment trials. Journal of Theoretical and Applied Genetics. 136. Article 121. https://doi.org/10.1007/s00122-023-04364-4.
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Mapping disease resistance genes in alfalfa
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Samac, D.A., Medina, C.A., Yu, L., Sierra-Moya, Y., Zhao, D., Lin, M., Mejia-Guerra, K., Beil, C., Sheehan, M. 2023. Mapping disease resistance genes in alfalfa. Plant and Animal Genome. January 13-18, 2023. San Diego, California.
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Accuracy of genomic selection for alfalfa biomass yield in two full-sib populations
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He, X., Zhang, F., He, F., Shen, Y., Yu, L., Zhang, T., Kang, J. 2022. Accuracy of genomic selection for alfalfa biomass yield in two full-sib populations. Frontiers in Plant Science. 13. Article 1037272. https://doi.org/10.3389/fpls.2022.1037272.
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Identification of QTL and candidate genes associated with biomass yield and feed quality in response to water deficit in alfalfa (Medicago sativa L.) using linkage mapping and RNA-Seq
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Jiang, X., Yu, A., Zhang, F., Yang, T., Wang, C., Gao, T., Yang, Q., Yu, L., Wang, Z., Kang, J. 2022. Identification of QTL and candidate genes associated with biomass yield and feed quality in response to water deficit in alfalfa (Medicago sativa L.) using linkage mapping and RNA-Seq. Frontiers in Plant Science. 13. Article 996672. https://doi.org/10.3389/fpls.2022.996672.
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Recent structural variations in the Medicago chloroplast genomes and their horizontal transfer into nuclear chromosomes
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Jiao, Y., He, X., Song, R., Wang, X., Zhang, H., Aili, R., Chao, Y., Shen, Y., Yu, L., Zhang, T., Jia, S. 2022. Recent structural variations in the Medicago chloroplast genomes and their horizontal transfer into nuclear chromosomes. Journal of Systematics and Evolution. 61(4):627-642. https://doi.org/10.1111/jse.12900.
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Two linked resistance genes function divergently in defence against Verticillium wilt in alfalfa
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Lin, S., Niu, Y., Medina, C., Yu, L. 2022. Two linked resistance genes function divergently in defence against Verticillium wilt in alfalfa. Plant Biotechnology Journal. 20(4):619-621. https://doi.org/10.1111/pbi.13779.
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Genome assembly of alfalfa cultivar Zhongmu-4 and identification of SNPs associated with agronomic traits
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Long, R., Zhang, F., Zhang, Z., Li, M., Chen, L., Wang, X., Liu, W., Zhang, T., Yu, L., He, F., Jiang, X., Yang, X., Yang, C., Wang, Z., Kang, J., Yang, Q. 2022. Genome assembly of alfalfa cultivar Zhongmu-4 and identification of SNPs associated with agronomic traits. Genomics, Proteomics and Bioinformatics. 20(1):14-28. https://doi.org/10.1016/j.gpb.2022.01.002.
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Strategies to increase prediction accuracy in genomic selection of complex traits in alfalfa (Medicago sativa L.)
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Medina, C., Kaur, H., Ray, I., Yu, L. 2021. Strategies to increase prediction accuracy in genomic selection of complex traits in alfalfa (Medicago sativa L.). Cells. 10(12). Article 3372. https://doi.org/10.3390/cells10123372.
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Pan-transcriptome identifying master genes and regulation network in response to drought and salt stresses in alfalfa (Medicago sativa L.)
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Medina, C., Samac, D.A., Yu, L. 2021. Pan-transcriptome identifying master genes and regulation network in response to drought and salt stresses in alfalfa (Medicago sativa L.). Scientific Reports. 11. Article 17203. https://doi.org/10.1038/s41598-021-96712-x.
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Genetic and genomic assessments for improving drought resilience in alfalfa
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Yu, L., Medina, C., Peel, M. 2021. Genetic and genomic assessments for improving drought resilience in alfalfa. In: Yu LX., Kole C., editors. The Alfalfa Genome. Compendium of Plant Genomes. Springer. Cham, Switzerland. p.235-253. https://doi.org/10.1007/978-3-030-74466-3_14.
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Developing SNPs and strategies for genomic analysis in alfalfa
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Medina, C., Yu, L. 2021. Developing SNPs and strategies for genomic analysis in alfalfa. In: Yu LX., Kole C., editors. The Alfalfa Genome. Compendium of Plant Genomes. Springer. Cham, Switzerland. pp.159-175. https://doi.org/10.1007/978-3-030-74466-3_10.
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Self-incompatibility, inbreeding depression, and potential to develop inbred lines in alfalfa
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Parajuli, A., Yu, L., Peel, M., See, D.R., Wager, S., Norberg, S., Zhang, Z. 2021. Self-incompatibility, inbreeding depression, and potential to develop inbred lines in alfalfa. In: Yu LX., Kole C., editors. The Alfalfa Genome. Compendium of Plant Genomes. Springer. Cham, Switzerland. p.255-269. https://doi.org/10.1007/978-3-030-74466-3_15.
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Identification and characterization of disease resistance genes in alfalfa and Medicago truncatula for breeding improved cultivars
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Samac, D.A., Yu, L., Missaoui, A.M. 2021. Identification and characterization of disease resistance genes in alfalfa and Medicago truncatula for breeding improved cultivars. In: Yu,X. and Kole, C., editors. The Alfalfa Genome, Compendium of Plant Genomics. Springer, Cham:Switzerland. p. 211-233. https://doi.org/10.1007/978-3-030-74466-3_13.
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Genome-wide association studies identifying multiple loci associated with alfalfa forage quality
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Lin, S., Medina, C., Norberg, S., Combs, D., Wang, G., Shewmaker, G., Fransen, S., Llewellyn, D., Yu, L. 2021. Genome-wide association studies identifying multiple loci associated with alfalfa forage quality. Journal of Genetics and Genomics. 12. Article 648192. https://doi.org/10.3389/fpls.2021.648192.
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Validation of UAV-based alfalfa biomass predictability using photogrammetry with fully automatic plot segmentation
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Tang, Z., Parajuli, A., Chen, C., Hu, Y., Revolinski, S., Medina, C., Lin, S., Zhang, Z., Yu, L. 2021. Validation of UAV-based alfalfa biomass predictability using photogrammetry with fully automatic plot segmentation. Scientific Reports. 11(1). Article 3336. https://doi.org/10.1038/s41598-021-82797-x.
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Alfalfa (Medicago sativa L.) crop vigor and yield characterization using high resolution aerial multispectral and thermal infrared imaging technique
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Chandel, A., Khot, L., Yu, L. 2021. Alfalfa (Medicago sativa L.) crop vigor and yield characterization using high resolution aerial multispectral and thermal infrared imaging technique. Computers and Electronics in Agriculture. 182. Article 105999. https://doi.org/10.1016/j.compag.2021.105999.
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Self-incompatibility, inbreeding depression, and potential to develop inbred lines in alfalfa: A review
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Parajuli, A., Yu, L., Peel, M., See, D.R., Wager, S., Norberg, S., Zhang, Z. 2020. Self-incompatibility, inbreeding depression, and potential to develop inbred lines in alfalfa: A review. Preprints. 1-18. https://doi.org/10.20944/preprints202011.0390.v1.
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Identification of genetic loci associated with forage quality in response to water deficit in autotetraploid alfalfa (Medicago sativa L.)
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Lin, S., Medina, C., Boge, B., Hu, J., Fransen, S., Norberg, S., Yu, L. 2020. Identification of genetic loci associated with forage quality in response to water deficit in autotetraploid alfalfa (Medicago sativa L.). Biomed Central (BMC) Plant Biology. 20. https://doi.org/10.1186/s12870-020-02520-2.
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Construction of high-density genetic linkage map and mapping quantitative trait loci (QTL) for flowering time in autotetraploid alfalfa (Medicago sativa L.) using genotyping by sequencing
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Zhang, F., Kang, J., Long, R., Yu, L., Sun, Y., Wang, Z., Zhao, Z., Zhang, T., Yang, Q. 2020. Construction of high-density genetic linkage map and mapping quantitative trait loci (QTL) for flowering time in autotetraploid alfalfa (Medicago sativa L.) using genotyping by sequencing. The Plant Genome. 13(3). Article e20045. https://doi.org/10.1002/tpg2.20045.
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Quantitative trait locus mapping of yield and plant height in autotetraploid alfalfa (Medicago sativa L.)
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He, F., Long, R., Zhang, T., Zhang, F., Wang, Z., Yang, X., Jiang, X., Yang, C., Zhi, X., Li, M., Yu, L., Kang, J., Yang, Q. 2020. Quantitative trait locus mapping of yield and plant height in autotetraploid alfalfa (Medicago sativa L.). The Crop Journal. 8(5):812-818. https://doi.org/10.1016/j.cj.2020.05.003.
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Genome-wide association and prediction of traits related to salt tolerance in autotetraploid alfalfa (Medicago sativa L.)
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Medina, C., Hawkins, C., Liu, X., Peel, M., Yu, L. 2020. Genome-wide association and prediction of traits related to salt tolerance in autotetraploid alfalfa (Medicago sativa L.). International Journal of Molecular Sciences. 21:3361. https://doi.org/10.3390/ijms21093361.
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Construction of high-density linkage maps and identification of quantitative trait loci associated with verticillium wilt resistance in autotetraploid alfalfa (Medicago sativa L.)
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Yu, L., Zhang, F., Culma, C., Lin, S., Niu, Y., Zhang, T., Yang, Q., Smith, M., Hu, J. 2020. Construction of high-density linkage maps and identification of quantitative trait loci associated with verticillium wilt resistance in autotetraploid alfalfa (Medicago sativa L.). Plant Disease. 104(5):1439-1444. https://doi.org/10.1094/PDIS-08-19-1718-RE.
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Genetic mapping of leaf-related traits in autotetraploid alfalfa (Medicago sativa L.)
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He, F., Kang, J., Zhang, F., Long, R., Yu, L., Wang, Z., Zhao, Z., Zhang, T., Yang, Q. 2019. Genetic mapping of leaf-related traits in autotetraploid alfalfa (Medicago sativa L.). Molecular Breeding. 39. https://doi.org/10.1007/s11032-019-1046-8.
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High-density linkage map construction and mapping QTLs for yield and yield components in autotetraploid alfalfa using RAD-seq
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Zhang, F., Kang, J., Long, R., Yu, L., Wang, Z., Zhao, Z., Zhang, T., Yang, Q. 2019. High-density linkage map construction and mapping QTLs for yield and yield components in autotetraploid alfalfa using RAD-seq. Biomed Central (BMC) Plant Biology. 19(165):1-12. https://doi.org/10.1186/s12870-019-1770-6.
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Mark E. Sorrells: Plant breeder, geneticist, innovator, mentor
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Gul, A., Diepenbock, C., Munkvold, J., Paterson, A., Kucek, L.K., Souze, E., La Rota, M., Yu, L. 2019. Mark E. Sorrells: Plant breeder, geneticist, innovator, mentor. In: Goldman, I., editor. Plant Breeding Reviews, Volume 42. Hoboken, NJ: John Wiley & Sons, Inc. p. 1-38. https://doi.org/10.1002/9781119521358.ch1.
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Genetic loci associated with salt tolerance in advanced breeding populations of tetraploid alfalfa using genome-wide association studies
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Liu, X., Hawkins, C., Peel, M., Yu, L. 2019. Genetic loci associated with salt tolerance in advanced breeding populations of tetraploid alfalfa using genome-wide association studies. The Plant Genome. 12:180026. https://doi.org/10.3835/plantgenome2018.05.0026.
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Genetic mapping of resistance to Aphanomyces root rot in alfalfa
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Genetic mapping of resistance to Aphanomyces root rot in alfalfa
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Samac, D.A., Dornbusch, M.R., Bucciarelli, B., Miller, S.S., Yu, L. 2018. Genetic mapping of resistance to Aphanomyces root rot in alfalfa. North American Alfalfa Improvement Conference. June 4-6, 2018, Logan, Utah.
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Enhancing faba bean (Vicia faba L.) germplasm for resilience to temperature extremes
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Recent progress in alfalfa (Medicago sative L.) genomics and genomic selection
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Hawkins, C., Yu, L. 2018. Recent progress in alfalfa (Medicago sative L.) genomics and genomic selection. The Crop Journal. https://doi.org/10.1016/j.cj.2018.01.006.
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Genomic Architecture and Phenotypic Plasticity of Forage Quality in Response to Water Deficit in Alfalfa (Medicago sativa L.)
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Yu, L., Boge, W.L., Hawkins, C., Fransen, S. 2018. Genomic Architecture and Phenotypic Plasticity of Forage Quality in Response to Water Deficit in Alfalfa (Medicago sativa L.). Meeting Abstract. https://pag.confex.com/pag/xxvi/meetingapp.cgi/Person/38114.
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Genetic diversity and phenotypic variation for drought resistance in alfalfa (Medicago sativa L.) germplasm collected for drought tolerance
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Zhang, T., Kesoju, S., Greene, S.L., Frasen, S., Hu, J., Yu, L. 2017. Genetic diversity and phenotypic variation for drought resistance in alfalfa (Medicago sativa L.) germplasm collected for drought tolerance. Genetic Resources and Crop Evolution. 65(2):471-484. https://doi.org/10.1007/s10722-017-0546-9.
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Identification of single-nucleotide polymorphic loci associated with biomass yield under water deficit in alfalfa (Medicago sativa L.) using genome-wide sequencing and association mapping
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Yu, L. 2017. Identification of single-nucleotide polymorphic loci associated with biomass yield under water deficit in alfalfa (Medicago sativa L.) using genome-wide sequencing and association mapping. Frontiers in Plant Science. 8:1152. https://doi.org/10.3389/fpls.2017.01152.
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Identification of loci Associated with Resistance to Root-Rot Diseases in Autotetraploid Alfalfa using Genome-Wide Sequencing and Association Mapping
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Identification of markers associated with race-specific resistance to Aphanomyces root rot in alfalfa
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Samac, D.A., Bucciarelli, B., Dornbusch, M.R., Miller, S.S., Yu, L. 2017. Identification of markers associated with race-specific resistance to Aphanomyces root rot in alfalfa. American Phytopathological Society. August 5-9, 2017. San Antonio, Texas.
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Genome-wide association mapping of loci associated with plant growth and forage production under salt stress in alfalfa (Medicago sativa L.)
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Liu, X., Yu, L. 2017. Genome-wide association mapping of loci associated with plant growth and forage production under salt stress in alfalfa (Medicago sativa L.). Frontiers in Plant Science. 8:853. https://doi.org/10.3389/fpls.2017.00853.
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The impact of genotyping-by-sequencing pipelines on SNP discovery and identification of markers associated verticillium wilt resistance in autotetraploid alfalfa (Medicago sativa l.)
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Yu, L., Zheng, P., Bhamidimarri, S., Liu, X., Main, D. 2017. The impact of genotyping-by-sequencing pipelines on SNP discovery and identification of markers associated verticillium wilt resistance in autotetraploid alfalfa (Medicago sativa l.). Frontiers in Plant Science. 8:89. https://doi.org/10.3389/fpls.2017.00089.
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Identification and validation of single nucleotide polymorphic markers linked to Ug99 stem rust resistance in spring wheat
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Yu, L., Chao, S., Singh, R., Sorrells, M. 2017. Identification and validation of single nucleotide polymorphic markers linked to Ug99 stem rust resistance in spring wheat. PLoS One. doi: 10.1371/journal.pone.0171963.
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Genome-wide association study identifies loci for salt tolerance during germination in autotetraploid alfalfa (Medicago sativa L.) using genotyping-by-sequencing
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Yu, L., Liu, X., Boge, W.L., Liu, X. 2016. Genome-wide association study identifies loci for salt tolerance during germination in autotetraploid alfalfa (Medicago sativa L.) using genotyping-by-sequencing. Frontiers in Plant Science. 7:956. https://doi.org/10.3389/fpls.2016.00956.
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Genomic Analysis of Verticillium Wilt Resistance and Drought Tolerance in Alfalfa
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Genotyping-by-sequencing based genome-wide association studies on Verticillium wilt resistance in heterozygous autotetraploid alfalfa (Medicago sativa L.)
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Yu, L., Zheng, P., Zhang, T., Rodriguez, J., Main, D. 2016. Genotyping-by-sequencing based genome-wide association studies on Verticillium wilt resistance in heterozygous autotetraploid alfalfa (Medicago sativa L.). Molecular Plant Pathology. 18(2):187-194. https://doi.org/10.1111/mpp.12389.
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Comparative transcriptomes between viviparous1 and wildtype maize developing endosperms in response to water deficit
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Yu, L., Setter, T. 2015. Comparative transcriptomes between viviparous1 and wildtype maize developing endosperms in response to water deficit. Environmental and Experimental Botany. 123:116–124.
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Identification of loci associated with drought resistance traits in heterozygous autotetraploid alfalfa (Medicago sativa L.) using genome-wide association studies with genotyping by sequencing
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Zhang, T., Yu, L., Zheng, P., Li, Y., Rivera, M.C., Main, D., Greene, S.L. 2015. Identification of loci associated with drought resistance traits in heterozygous autotetraploid alfalfa (Medicago sativa L.) using genome-wide association studies with genotyping by sequencing. PLoS One. 1-17. https://doi.org/10.1371/journal.pone.0138931.
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Identification of molecular markers associated with verticillium wilt resistance in alfalfa (Medicago sativa l.) using high-resolution melting
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Zhang, T., Yu, L., Mccord, P.H., Miller, D., Bhamidimarri, S., Johnson, D., Monteros, M., Ho, J., Reisen, P., Samac, D.A. 2014. Identification of molecular markers associated with verticillium wilt resistance in alfalfa (Medicago sativa l.) using high-resolution melting. PLoS One. 1-18. https://doi.org/10.1371/journal.pone.0115953.
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Molecular and functional characterization of two drought-induced zinc finger proteins, ZmZnF1 and ZmZnF2 from maize kernels
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Yu, L., Shen, X., Setter, T. 2014. Molecular and functional characterization of two drought-induced zinc finger proteins, ZmZnF1 and ZmZnF2 from maize kernels. Environmental and Experimental Botany. 111:13-20.
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Conserving plants in gene banks and nature: Investigating complementarity with Trifolium thompsonii Morton
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Greene, S.L., Kisha, T.J., Yu, L., Parra-Quijano, M. 2014. Conserving plants in gene banks and nature: Investigating complementarity with Trifolium thompsonii Morton. PLoS One. 9(8):e105145.
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A consensus map for Ug99 stem rust resistance loci in wheat
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Yu, L., Hugues, B., Rouse, M.N., Singh, S., Singh, R.P., Bhavani, S., Huerta-Espino, J., Sorrells, M.E. 2014. A Consensus Map for Ug99 Stem Rust Resistance Loci in Wheat. Theoretical and Applied Genetics. Available: http://link.springer.com/article/10.1007%2Fs00122-014-2326-7.
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Molecular and cellular characterization of the tomato pollen profilin, LePro1
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Yu, L., Parthasarathy, M. 2014. Molecular and cellular characterization of the tomato pollen profilin, LePro1. PLoS One. DOI:10.1371/journal.pone.0086505.
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