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ARS Home » Plains Area » Manhattan, Kansas » Center for Grain and Animal Health Research » Hard Winter Wheat Genetics Research » People & Locations » Paul St Amand

Paul St Amand
Hard Winter Wheat Genetics Research
Geneticist Plants

Phone: (785) 532-7350
Fax: (785) 532-6167

USDA/ARS/CGAHR
3014D THROCKMORTON HALL - KSU
CGAHR
MANHATTAN, KS 66506

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Characterization of PmBN418, a wheat powdery mildew resistance gene on the rye 1RS chromosome arm Reprint Icon - (Peer Reviewed Journal)
Xu, X., Bai, G., Li, G., Cowger, C., Bernardo, A., Carver, B.F., St Amand, P., Bian, R. 2021. Characterization of PmBN418, a wheat powdery mildew resistance gene on the rye 1RS chromosome arm. Crop Science. 1-8. http://doi.org/10.1002/csc2.20637.
Characterization of the genetic basis of local adaptation of wheat landraces from Iran and Pakistan using GWAS Reprint Icon - (Peer Reviewed Journal)
Hanif, U., Alipour, H., Gul, A., Li, J., Bihamta, R., Mohammadi, V., Peyghambari, S., Amir, R., Munir, F., Llyas, M., St Amand, P.C., Bernardo, A.E., Bai, G. 2021. Characterization of the genetic basis of local adaptation of wheat landraces from Iran and Pakistan using GWAS. The Plant Genome. https://doi.org/10.1002/tpg2.20096.
Characterization of an incomplete leaf rust resistance gene and development of KASP markers for the leaf rust resistance gene Lr47 in wheat Reprint Icon - (Peer Reviewed Journal)
Xu, X., Li, G., Bai, G., Bernardo, A.E., Carver, B.F., St Amand, P.C., Bian, R. 2021. Characterization of an incomplete leaf rust resistance gene and development of KASP markers for the leaf rust resistance gene Lr47 in wheat. Phytopathology. https://doi.org/10.1094/PHYTO-07-20-0308-R.
Development of KASP markers for wheat greenbug resistance gene Gb5 Reprint Icon - (Peer Reviewed Journal)
Xu, X., Li, G., Bai, G., Bernardo, A., Carver, B.F., St Amand, P., Armstrong, S. 2020. Development of KASP markers for wheat greenbug resistance gene Gb5. Crop Science. 61(1):490–499. https://doi.org/10.1002/csc2.20339.
High resolution genome-wide association study identified genomic regions and candidate genes for important agronomic traits in wheat Reprint Icon - (Peer Reviewed Journal)
Pang, Y., Liu, C., Wang, D., St Amand, P.C., Bernardo, A.E., Li, W., He, F., Li, L., Wang, L., Yuan, X., Bai, G., et al. 2020. High resolution genome-wide association study identified genomic regions and candidate genes for important agronomic traits in wheat. Molecular Plant. https://doi.org/10.1016/j.molp.2020.07.008.
Discovery of Alpha Kafirin Alleles Associated with Protein Digestibility in Grain Sorghum Reprint Icon - (Peer Reviewed Journal)
Understanding the Genetic Basis of Spike Fertility to Improve Grain Number, Harvest Index, and Grain Yield in Wheat Under High Temperature Stress Environments Reprint Icon - (Peer Reviewed Journal)
Pradhan, S., Babar, M., Robbins, K., Bai, G., Mason, R., Khan, J., Dipendra, S., Avci, M., Guo, J., Mohammad, H., Bhatta, M., Mergoum, M., Asseng, S., St Amand, P.C., Gezan, S., Baik, B.V., Blount, A., Bernardo, A.E. 2019. Understanding the Genetic Basis of Spike Fertility to Improve Grain Number, Harvest Index, and Grain Yield in Wheat Under High Temperature Stress Environments. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2019.01481.
Rapid identification of a novel wheat leaf rust resistance gene by selective genotyping of F2 plants using next-generation-sequencing - (Abstract Only)
Multiplex Restriction Amplicon Sequencing (MRASeq), a novel next generation sequencing based marker platform for high-throughput genotyping Reprint Icon - (Peer Reviewed Journal)
Bernardo, A., St Amand, P.C., Le, H., Su, Z., Bai, G. 2019. Multiplex Restriction Amplicon Sequencing (MRASeq), a novel next generation sequencing based marker platform for high-throughput genotyping. Nucleic Acids Research. https://doi.org/10.1111/pbi.13192.
Genetic diversity, population structure, and linkage disequilibrium of pearl millet Reprint Icon - (Peer Reviewed Journal)
Serba, D.D., Muleta, K., St Amand, P.C., Bernando, A., Bai, G., Perumal, R., Bashir, E., Morris, G. 2019. Genetic diversity, population structure, and linkage disequilibrium of pearl millet. The Plant Genome. https://doi.org/doi:10.3835/plantgenome2018.11.0091.
A deletion mutation in TaHRC confers Fhb1 resistance to Fusarium head blight in wheat Reprint Icon - (Peer Reviewed Journal)
Su, Z., Bernardo, A., Tian, B., Chen, H., Wang, S., Ma, H., Cai, S., Liu, D., Zhang, D., Li, T., Trick, H., St Amand, P.C., Yu, J., Zhang, Z., Bai, G. 2019. A deletion mutation in TaHRC confers Fhb1 resistance to Fusarium head blight in wheat. Nature Genetics. 51:1099-1105. https://doi.org/10.1038/s41588-019-0425-8.
Persistence of rye (secale cereale L.) chromosome arm 1RS in wheat (triticum aestivum L.) breeding programs of the great plains of north america Reprint Icon - (Peer Reviewed Journal)
Graybosch, R.A., Bai, G., St Amand, P.C., Sarath, G. 2020. Persistence of rye (secale cereale L.) chromosome arm 1RS in wheat (triticum aestivum L.) breeding programs of the great plains of north america. Genetic Resources and Crop Evolution. 66:941-950. https://doi.org/10.1007/s10722-019-00742-4.
Biofortification of hard red winter wheat by genes conditioning low phytate and high grain protein concentration Reprint Icon - (Peer Reviewed Journal)
Venegas, J.P., Graybosch, R.A., Wienhold, B.J., Rose, D.J., Waters, B.M., Baenziger, P.S., Eskridge, K., Bai, G., St Amand, P.C. 2018. Biofortification of hard red winter wheat (Triticum aestivum L.) by genes conditioning low phytate and high grain protein concentration. Crop Science. 58(5):1942-1953. https://doi.org/10.2135/cropsci2018.03.0175.
Using next generation sequencing for multiplexed trait-linked markers in wheat Reprint Icon - (Peer Reviewed Journal)
Bernardo, A., Wang, S., St Amand, P.C., Bai, G. 2015. Using Next Generation Sequencing for Multiplexed Trait-linked Markers in Wheat. PLoS One. 10(12):e0143890. doi:10.1371/journal.pone.0143890.
Identification of markers linked to genes for sprouting tolerance (independent of grain color) in hard white winter wheat (HWWW) Reprint Icon - (Peer Reviewed Journal)
Fakthongphan, J., Graybosch, R.A., Bai, G., St Amand, P., Baenziger, S.P. 2015. Identification of markers linked to genes for sprouting tolerance (independent of grain color) in hard white winter wheat (HWWW). Theoretical and Applied Genetics. PP 1-12.
Registration of 'TAM 305' hard red winter Wheat - (Peer Reviewed Journal)
Ibrahim, A., Rudd, J., Devkota, R., Baker, J., Sutton, R., Simoneaux, B., Opena, G., Herrington, R., Rooney, L., Dykes, L., Awika, J., Nelson, L.R., Fritz, A., Bowden, R.L., Graybosch, R.A., Jin, Y., Seabourn, B.W., Chen, X., Kolmer, J.A., St Amand, P., Bai, G., Duncan, R. 2015. Registration of 'TAM 305' hard red winter Wheat. Journal of Plant Registrations. doi:10.3198/jpr2014.08.0054crc.
Construction of dense linkage maps "on the fly" using early generation wheat breeding populations - (Peer Reviewed Journal)
Eckard, J., Gonzales-Hernandez, J., Chao, S., St Amand, P., Bai, G. 2014. Construction of dense linkage maps "on the fly" using early generation wheat breeding populations. Molecular Breeding. DOI:10.1007/s11032-014-0116-1.
Molecular markers linked to genes important for Hard Winter Wheat production and marketing in the U.S. Great Plains - (Peer Reviewed Journal)
Liu, S., Rudd, J.C., Bai, G., Haley, S.D., Ibrahim, A., Xiu, Q., Hays, D.B., Graybosch, R.A., Devkota, R.N., St Amand, P. 2014. Molecular markers linked to genes important for Hard Winter Wheat production and marketing in the U.S. Great Plains. Crop Science. 54:1304-1321. DOI:10.2135/cropsci2013.08.0564.
Release of ‘Mattern’ waxy (amylose-free) winter wheat Reprint Icon - (Peer Reviewed Journal)
Graybosch, R.A., Baenziger, P.S., Dantra, D., Regassa, T., Jin, Y., Kolmer, J.A., Wegulo, S., Bai, G., St Amand, P., Chen, X., Seabourn, B.W., Dowell, F.E., Bowden, R.L., Marshall, D.S. 2014. Release of ‘Mattern’ waxy (amylose-free) winter wheat. Journal of Plant Registrations. 8:43-48.
Application of genotyping-by-sequencing on semiconductor sequencing platforms: A comparison of genetic and reference-based marker ordering in barley Reprint Icon - (Peer Reviewed Journal)
Mascher, M., Wu, S., St Amand, P., Rico, A., Sartori, A., Stein, N., Poland, J.A. 2013. Application of genotyping-by-sequencing on semiconductor sequencing platforms: A comparison of genetic and reference-based marker ordering in barley. PLoS One. DOI: 10.1371/journal.pone.0076925.
Evaluation of genetic markers for prediction of pre-harvest sprouting tolerance in hard white winter wheats Reprint Icon - (Peer Reviewed Journal)
Graybosch, R.A., St Amand, P., Bai, G. 2013. Evaluation of genetic markers for prediction of pre-harvest sprouting tolerance in hard white winter wheats. Plant Breeding. doi:10.1111/pbr.12071.
Consensus mapping and identification of markers for marker-assisted selection of Wsm2 in wheat Reprint Icon - (Peer Reviewed Journal)
Lu, H., Kottke, R., Devkota, R., St Amand, P., Bernardo, A., Bai, G., Byrne, P., Martin, T.J., Haley, S.D., Rudd, J. 2011. Consensus mapping and identification of markers for marker-assisted selection of Wsm2 in wheat. Crop Science. 52:720-728.
Starch waxiness in hexaploid wheat (Triticum aestivum L.) by NIR reflectance spectroscopy - (Peer Reviewed Journal)
Delwiche, S.R., Graybosch, R.A., St Amand, P., Bai, G. 2011. Starch waxiness in hexaploid wheat (Triticum aestivum L.) by NIR reflectance spectroscopy. Journal of Agricultural and Food Chemistry. 59:4002-4008.