Paul St Amand
Hard Winter Wheat Genetics Research
Geneticist Plants
Phone: (785) 532-7350
Fax: (785) 532-6167
USDA/ARS/CGAHR
3014D THROCKMORTON HALL - KSU
CGAHR
MANHATTAN, KS 66506
Publications
(Clicking on the reprint icon
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High resolution genome-wide association study identified genomic regions and candidate genes for important agronomic traits in wheat
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(Peer Reviewed Journal)
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Pang, Y., Liu, C., Wang, D., St Amand, P.C., Bernardo, A.E., Li, W., He, F., Li, L., Wang, L., Yuan, X., Bai, G. 2020. High resolution genome-wide association study identified genomic regions and candidate genes for important agronomic traits in wheat. Molecular Plant. https://doi.org/10.1016/j.molp.2020.07.008. 'et all'
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Discovery of Alpha Kafirin Alleles Associated with Protein Digestibility in Grain Sorghum
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(Peer Reviewed Journal)
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Rapid identification of a novel wheat leaf rust resistance gene by selective genotyping of F2 plants using next-generation-sequencing
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(Abstract Only)
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Multiplex Restriction Amplicon Sequencing (MRASeq), a novel next generation sequencing based marker platform for high-throughput genotyping
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(Peer Reviewed Journal)
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Bernardo, A., St Amand, P.C., Le, H., Su, Z., Bai, G. 2019. Multiplex Restriction Amplicon Sequencing (MRASeq), a novel next generation sequencing based marker platform for high-throughput genotyping. Nucleic Acids Research. https://doi.org/10.1111/pbi.13192.
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Genetic diversity, population structure, and linkage disequilibrium of pearl millet
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(Peer Reviewed Journal)
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Serba, D.D., Muleta, K., St Amand, P.C., Bernando, A., Bai, G., Perumal, R., Bashir, E., Morris, G. 2019. Genetic diversity, population structure, and linkage disequilibrium of pearl millet. The Plant Genome. https://doi.org/doi:10.3835/plantgenome2018.11.0091.
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A deletion mutation in TaHRC confers Fhb1 resistance to Fusarium head blight in wheat
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(Peer Reviewed Journal)
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Su, Z., Bernardo, A., Tian, B., Chen, H., Wang, S., Ma, H., Cai, S., Liu, D., Zhang, D., Li, T., Trick, H., St Amand, P.C., Yu, J., Zhang, Z., Bai, G. 2019. A deletion mutation in TaHRC confers Fhb1 resistance to Fusarium head blight in wheat. Nature Genetics. 51:1099-1105. https://doi.org/10.1038/s41588-019-0425-8.
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Biofortification of hard red winter wheat by genes conditioning low phytate and high grain protein concentration
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(Peer Reviewed Journal)
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Venegas, J.P., Graybosch, R.A., Wienhold, B.J., Rose, D.J., Waters, B.M., Baenziger, P.S., Eskridge, K., Bai, G., St Amand, P.C. 2018. Biofortification of hard red winter wheat (Triticum aestivum L.) by genes conditioning low phytate and high grain protein concentration. Crop Science. 58(5):1942-1953. https://doi.org/10.2135/cropsci2018.03.0175.
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Using next generation sequencing for multiplexed trait-linked markers in wheat
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(Peer Reviewed Journal)
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Bernardo, A., Wang, S., St Amand, P.C., Bai, G. 2015. Using Next Generation Sequencing for Multiplexed Trait-linked Markers in Wheat. PLoS One. 10(12):e0143890. doi:10.1371/journal.pone.0143890.
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Identification of markers linked to genes for sprouting tolerance (independent of grain color) in hard white winter wheat (HWWW)
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(Peer Reviewed Journal)
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Fakthongphan, J., Graybosch, R.A., Bai, G., St Amand, P., Baenziger, S.P. 2015. Identification of markers linked to genes for sprouting tolerance (independent of grain color) in hard white winter wheat (HWWW). Theoretical and Applied Genetics. PP 1-12.
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Registration of 'TAM 305' hard red winter Wheat
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(Peer Reviewed Journal)
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Ibrahim, A., Rudd, J., Devkota, R., Baker, J., Sutton, R., Simoneaux, B., Opena, G., Herrington, R., Rooney, L., Dykes, L., Awika, J., Nelson, L.R., Fritz, A., Bowden, R.L., Graybosch, R.A., Jin, Y., Seabourn, B.W., Chen, X., Kolmer, J.A., St Amand, P., Bai, G., Duncan, R. 2015. Registration of 'TAM 305' hard red winter Wheat. Journal of Plant Registrations. doi:10.3198/jpr2014.08.0054crc.
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Construction of dense linkage maps "on the fly" using early generation wheat breeding populations
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(Peer Reviewed Journal)
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Eckard, J., Gonzales-Hernandez, J., Chao, S., St Amand, P., Bai, G. 2014. Construction of dense linkage maps "on the fly" using early generation wheat breeding populations. Molecular Breeding. DOI:10.1007/s11032-014-0116-1.
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Molecular markers linked to genes important for Hard Winter Wheat production and marketing in the U.S. Great Plains
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(Peer Reviewed Journal)
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Liu, S., Rudd, J.C., Bai, G., Haley, S.D., Ibrahim, A., Xiu, Q., Hays, D.B., Graybosch, R.A., Devkota, R.N., St Amand, P. 2014. Molecular markers linked to genes important for Hard Winter Wheat production and marketing in the U.S. Great Plains. Crop Science. 54:1304-1321. DOI:10.2135/cropsci2013.08.0564.
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Release of ‘Mattern’ waxy (amylose-free) winter wheat
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(Peer Reviewed Journal)
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Graybosch, R.A., Baenziger, P.S., Dantra, D., Regassa, T., Jin, Y., Kolmer, J.A., Wegulo, S., Bai, G., St Amand, P., Chen, X., Seabourn, B.W., Dowell, F.E., Bowden, R.L., Marshall, D.S. 2014. Release of ‘Mattern’ waxy (amylose-free) winter wheat. Journal of Plant Registrations. 8:43-48.
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Application of genotyping-by-sequencing on semiconductor sequencing platforms: A comparison of genetic and reference-based marker ordering in barley
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(Peer Reviewed Journal)
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Mascher, M., Wu, S., St Amand, P., Rico, A., Sartori, A., Stein, N., Poland, J.A. 2013. Application of genotyping-by-sequencing on semiconductor sequencing platforms: A comparison of genetic and reference-based marker ordering in barley. PLoS One. DOI: 10.1371/journal.pone.0076925.
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Evaluation of genetic markers for prediction of pre-harvest sprouting tolerance in hard white winter wheats
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(Peer Reviewed Journal)
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Graybosch, R.A., St Amand, P., Bai, G. 2013. Evaluation of genetic markers for prediction of pre-harvest sprouting tolerance in hard white winter wheats. Plant Breeding. doi:10.1111/pbr.12071.
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Consensus mapping and identification of markers for marker-assisted selection of Wsm2 in wheat
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(Peer Reviewed Journal)
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Lu, H., Kottke, R., Devkota, R., St Amand, P., Bernardo, A., Bai, G., Byrne, P., Martin, T.J., Haley, S.D., Rudd, J. 2011. Consensus mapping and identification of markers for marker-assisted selection of Wsm2 in wheat. Crop Science. 52:720-728.
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Starch waxiness in hexaploid wheat (Triticum aestivum L.) by NIR reflectance spectroscopy
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(Peer Reviewed Journal)
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Delwiche, S.R., Graybosch, R.A., St Amand, P., Bai, G. 2011. Starch waxiness in hexaploid wheat (Triticum aestivum L.) by NIR reflectance spectroscopy. Journal of Agricultural and Food Chemistry. 59:4002-4008.
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