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ARS Home » Northeast Area » Leetown, West Virginia » Cool and Cold Water Aquaculture Research » Research » Research Project #437699

Research Project: Integrated Research Approaches for Improving Production Efficiency in Rainbow Trout

Location: Cool and Cold Water Aquaculture Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Characteriztion of a leptin receptor paralog and its response to fasting in rainbow trout(Oncorhynchus mykiss) Reprint Icon - (Peer Reviewed Journal)
Mankiewicz, J.L., Cleveland, B.M. 2021. Characteriztion of a leptin receptor paralog and its response to fasting in rainbow trout(Oncorhynchus mykiss). International Journal of Molecular Sciences. 22: 7732. https://doi.org/10.3390/ijms22147732.

Comparisons among rainbow trout, Oncorhynchus mykiss, populations of maternal transcript profile associated with egg viability Reprint Icon - (Peer Reviewed Journal)
Weber, G.M., Birkett, J.E., Martin, K., Dixon, Ii, D., Gao, G., Leeds, T.D., Vallejo, R.L., Ma, H. 2021. Comparisons among rainbow trout, Oncorhynchus mykiss, populations of maternal transcript profile associated with egg viability. Biomed Central (BMC) Genomics. 22. Article 448. https://doi.org/10.1186/s12864-021-07773-1.

A long reads-based De novo assembly of the genome of the Arlee homozygous line reveals structural genome variance in rainbow trout Reprint Icon - (Peer Reviewed Journal)
Gao, G., Magadan, S., Waldbieser, G.C., Youngblood, R., Wheeler, P., Scheffler, B.E., Thorgaard, G., Palti, Y. 2021. A long reads-based De novo assembly of the genome of the Arlee homozygous line reveals structural genome variance in rainbow trout. Genes, Genomes, and Genomics. https://doi.org/10.1093/g3journal/jkab052.

Identification of high confidence structural variants in domesticated rainbow trout using whole-genome sequencing Reprint Icon - (Peer Reviewed Journal)
Liu, S., Gao, G., Layer, R.M., Thorgaard, G.H., Wiens, G.D., Leeds, T.D., Martin, K.E., Palti, Y. 2021. Identification of high confidence structural variants in domesticated rainbow trout using whole-genome sequencing. Frontiers in Genetics. 12:639355. https://doi.org/10.3389/fgene.2021.639355.

Genomic predictions for fillet yield and firmness in rainbow trout using reduced-density SNP panels Reprint Icon - (Peer Reviewed Journal)
Al-Tobasei, R., Ali, A., Garcia, A.L., Lourenco, D., Leeds, T.D., Salem, M. 2021. Genomic predictions for fillet yield and firmness in rainbow trout using reduced-density SNP panels. BMC Genomics. 22:92. https://doi.org/10.1186/s12864-021-07404-9.

Genomic analysis of a second rainbow trout line (Arlee) leads to an extended description of the IGH VDJ gene repertoire Reprint Icon - (Peer Reviewed Journal)
Magadan, S., Mondot, S., Palti, Y., Gao, G., Lefranc, M., Boudinot, P. 2021. Genomic analysis of a second rainbow trout line (Arlee) leads to an extended description of the IGH VDJ gene repertoire. Developmental and Comparative Immunology. 118: 103998. https://doi.org/10.1016/j.dci.2021.103998.

A long reads-based De novo assembly of the genome of the Arlee homozygous line reveals structural genome variance in rainbow trout Reprint Icon - (Pre-print Publication)
Gao, G., Magadan, S., Waldbieser, G.C., Youngblood, R., Wheeler, P., Scheffler, B.E., Thorgaard, G., Palti, Y. 2021. A long reads-based De novo assembly of the genome of the Arlee homozygous line reveals structural genome variance in rainbow trout. bioRxiv. https://doi.org/10.1101/2020.12.28.424581.

Molecular mechanisms regulating muscle plasticity in fish Reprint Icon - (Review Article)
Koganti, P., Yao, J., Cleveland, B.M. 2020. Molecular mechanisms regulating muscle plasticity in fish. Animals. 11(1):61. https://doi.org/10.3390/ani11010061.

Supplemental Microalgal DHA and Astaxanthin Affect Astaxanthin Metabolism and Redox Status of Juvenile Rainbow Trout Reprint Icon - (Peer Reviewed Journal)
Wu, K., Portman, M., Sealey, W., Cleveland, B.M., Lei, X. 2020. Supplemental Microalgal DHA and Astaxanthin Affect Astaxanthin Metabolism and Redox Status of Juvenile Rainbow Trout. Antioxidants. 10(1):16. https://doi.org/10.3390/antiox10010016.

Replacing fish oil and astaxanthin by microalgal sources produced different metabolic responses in juvenile rainbow trout fed 2 types of practical diets Reprint Icon - (Peer Reviewed Journal)
Zhu, S., Portman, M., Cleveland, B.M., Magnuson, A.D., Wu, K., Sealey, W., Lei, X. 2020. Replacing fish oil and astaxanthin by microalgal sources produced different metabolic responses in juvenile rainbow trout fed 2 types of practical diets. Journal of Animal Science. 99(1):1-14. https://doi.org/10.1093/jas/skaa403.

Compensatory response of the somatotropic axis from IGFBP-2b gene editing in rainbow trout (Oncorhynchus mykiss) Reprint Icon - (Peer Reviewed Journal)
Cleveland, B.M., Shiori, H., Jin, O., Radler, L.M., Munetaka, S. 2020. Compensatory response of the somatotropic axis from IGFBP-2b gene editing in rainbow trout (Oncorhynchus mykiss). Genes. 11, 1488. https://doi.org/10.3390/genes11121488.

Oxidative stress-related gene expression in diploid and triploid Rainbow Trout (Oncorhynchus mykiss) fed diets with organic and inorganic zinc Reprint Icon - (Peer Reviewed Journal)
Meiler, K., Cleveland, B.M., Radler, L.M., Kumar, V. 2020. Oxidative stress-related gene expression in diploid and triploid Rainbow Trout (Oncorhynchus mykiss) fed diets with organic and inorganic zinc. Aquaculture. 533: 736149. https://doi.org/10.1016/j.aquaculture.2020.736149.

Assessing accuracy of genomic predictions for resistance to infectious hematopoietic necrosis virus with progeny testing of selection candidates in a commercial rainbow trout breeding population Reprint Icon - (Peer Reviewed Journal)
Vallejo, R.L., Fragomeni, B.O., Cheng, H., Gao, G., Long, R., Shewbridge, K., Macmillan, J.R., Towner, R., Palti, Y. 2020. Assissing accuracy of genomic predictions for resistance to infectious hematopoietic necrosis virus with progeny testing of selection candidates in a commercial rainbow trout breeding population. Frontiers in Veterinary Science. 7:590048. https://doi.org/10.3389/fvets.2020.590048.

Analysis of the fecal microbiota of fast- and slow-growing rainbow trout (Oncorhynchus mykiss) Reprint Icon - (Peer Reviewed Journal)
Chapagain, P., Walker, D., Leeds, T.D., Cleveland, B.M., Salem, M. 2020. Analysis of the fecal microbiota of fast- and slow-growing rainbow trout (Oncorhynchus mykiss). Biomed Central (BMC) Genomics. 20:788. https://doi.org/10.1186/s12864-019-6175-2.

Hepatic fatty acid and transcriptome profiles during the transition from vegetable- to fish oil-based diets in rainbow trout (Oncorhynchus mykiss) Reprint Icon - (Peer Reviewed Journal)
Cleveland, B.M., Gao, G., Radler, L.M., Picklo, M.J. 2020. Hepatic fatty acid and transcriptome profiles during the transition from vegetable- to fish oil-based diets in rainbow trout (Oncorhynchus mykiss). Lipids. https://doi.org/10.1002/lipd.12287.