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United States Department of Agriculture

Agricultural Research Service


Location: Small Grains and Potato Germplasm Research

Project Number: 5366-21000-027-00-D
Project Type: In-House Appropriated

Start Date: Mar 21, 2008
End Date: Feb 19, 2013

Conserve and distribute a wide range of small grains genetic diversity and associated information to researchers and breeders worldwide. Strategically evaluate (phenotype) small grains genetic resources for priority biotic and abiotic stress resistance, quality factors, and other priority agronomic traits, and incorporate phenotypic data into the Germplasm Resources Information Network (GRIN) and/or other databases. Make newly-found major genes and adult-plant genes for Ug99 stem rust resistance available to breeders for incorporation into adapted germplasm for the United States. Characterize the genetic variability in small grain genebank collections via genotyping with leading edge genetic marker technology and geographic information systems.

Acquisition priorities include the wild relatives of Triticum, Hordeum, Avena, and Oryza to fill species and ecogeographic gaps in the crop collections. Geographic regions of special interest are the Caucasus and Central Asia. These gaps will be primarily addressed by collection expeditions and exchanges with other genebanks. All acquisitions will follow USDA-APHIS protocols to avoid the introduction of harmful diseases and insects. Mapping populations and other genetic resources developed in the Barley and Wheat Coordinated Agricultural Projects (CAP) will be stored and distributed as part of National Small Grains Collection (NSGC) genetic stock collections. Established procedures will be used to maintain and regenerate all NSGC germplasm accessions, with special attention to seed preparation and planting, plant pathogen monitoring, harvest, and laboratory processing. Seed will be provided to the National Center for Genetic Resources Preservation for safety back up. New information technology will be identified to increase the quality, accessibility, and value of the data collected. The project will either conduct or coordinate systematic evaluations of important traits. The small grains Crop Germplasm Committees (CGC) have previously developed lists of descriptors for evaluation and are consulted regularly for evaluation priorities. Several evaluations, ongoing for a number of years and considered high priority by the CGC, will be continued. Ug99 stem rust resistance research will focus on identifying new major and adult-plant genes in wheat landraces and making the new sources of resistance available to breeders for transfer to adapted germplasm for all regions of the U.S. Evaluation of rice germplasm will be coordinated at the USDA-ARS Dale Bumpers National Rice Research Center, Stuttgart, Arkansas and data will be returned to Aberdeen for inclusion in GRIN. SSR markers will be employed to genotype the NSGC core subsets of wheat and barley, totaling 5,500 and 2,577 accessions, respectively. To eliminate variation due to heterogeneity within accessions, single-plant-selections for each core accession will be generated for genotyping. Resulting data will be analyzed to better understand genetic variation within the collection, including the relationship between variation and geographic origin of accessions. Country, state/province, locality, and latitude/longitude data for NSGC accessions are maintained in GRIN. Traits of interest will be mapped and analyzed using GIS software and appropriate statistical techniques. Because stem and stripe rust of wheat and barley are of current concern worldwide, priority will be given to mapping the geographic origin of resistance. Accession genetic diversity in the core collections, based on molecular marker data will be mapped to better understand its relationship to accession geographic origin, to elucidate relations between geographic patterns of molecular diversity and trait diversity, and to do gap analysis to identify priority areas for future collection. Replacing 5366-21000-022-00D (3/08). FY09 Program Increase $175,000 FY10 Program Increase $37,200

Last Modified: 10/19/2017
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