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ARS Home » Pacific West Area » Corvallis, Oregon » National Clonal Germplasm Repository » People & Locations » Jill Bushakra

Jill Bushakra
National Clonal Germplasm Repository
Biological Science Technician (Plants)

Phone: (541) 738-4219
Fax: (541) 738-4205

33447 PEORIA RD
CORVALLIS , OR 973332521

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome -
Vanburen, R., Man Wai, C., Colle, M., Wang, J., Sullivan, S., Bushakra, J., Liachko, I., Vining, K., Dossett, M., Finn, C.E., Jibran, R., Chagne, D., Childs, K., Edger, P., Mockler, T., Bassil, N.V. 2018. A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome. Gigascience. 7:1-9. https://doi.org/10.1093/gigascience/giy094.
Characterization of aphid resistance loci in black raspberry (Rubus occidentalis L.) -
Bushakra, J., Dossett, M., Carter, K., Vining, K., Lee, J.C., Bryant, D., Vanburen, R., Lee, J., Mockler, T., Finn, C.E., Bassil, N.V. 2018. Characterization of aphid resistance loci in black raspberry (Rubus occidentalis L.). Molecular Breeding. 38:83. https://doi.org/10.1007/s11032-018-0839-5.
Repository contributions to Rubus research -
Bushakra, J., Alice, L., Carter, K., Dossett, M., Liston, A., Meiers, R., Mulch, C., Peterson, M.E., Vining, K., Zurn, J.D., Finn, C.E., Bassil, N.V., Hummer, K.E. 2018. Repository contributions to Rubus research. North American Raspberry & Blackberry Association Meeting. North American Raspberry & Blackberry Association Meeting.
Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data -
Jibran, R., Dzierzon, H., Bassil, N.V., Bushakra, J., Edger, P.P., Sullivan, S., Finn, C.E., Dossett, M., Vining, K.J., Vanburen, R., Mockler, T.C., Liachko, I., Davies, K.M., Foster, T.M., Chagne, D. 2017. Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data. Horticulture Research. 5:8. https://doi.org/10.1038/s41438-017-0013-y.
Increased phylogenetic resolution using target enrichment in Rubus -
Carter, K., Alice, L., Bryant, D., Bushakra, J., Liston, A., Mockler, T., Bassil, N.V., Hummer, K.E. 2017. Increased phylogenetic resolution using target enrichment in Rubus. HortScience. Available: https://ashs.confex.com/ashs/2017/meetingapp.cgi/Paper/26717.
Toward understanding genotype x environment interactions on flowering and fruiting in black raspberry (Rubus occidentalis L.) -
Bushakra, J., Bradish, C., Weber, C., Scheerens, J.C., Robbins, L., Dossett, M., Peterson, M.E., Fernandez, G., Bassil, N.V., Finn, C.E. 2017. Toward understanding genotype x environment interactions on flowering and fruiting in black raspberry (Rubus occidentalis L.). Acta Horticulturae. 1117:25-30.
North American crop wild relatives of temperate berries (Fragaria L., Ribes L., Rubus L., and Vaccinium L.) -
Genotyping and phenotyping heat tolerance in black raspberry (Rubus occidentalis L.) -
Bradish, C.M., Fernandez, G.E., Dossett, M., Bushakra, J., Bassil, N.V., Finn, C.E. 2016. Genotyping and phenotyping heat tolerance in black raspberry (Rubus occidentalis L.). Acta Horticulturae. 1127:321-324. doi: 10.17660/ActaHortic.2016.1127.50.
Sequence and analysis of the black raspberry (Rubus occidentalis) genome -
Vanburen, R., Bryant, D., Bushakra, J., Vining, K.J., Filichkin, S., Edger, P.P., Rowley, E.R., Priest, H.D., Michael, T.P., Dossett, M., Finn, C.E., Bassil, N.V., Mockler, T.C. 2018. Sequence and analysis of the black raspberry (Rubus occidentalis) genome. In: Hytönen T., Graham J., Harrison R., editors. The Genomes of Rosaceous Berries and their Wild Relatives. Compendium of Plant Genomes. Basel, Switzerland: Springer International Publishing. p. 185-197. doi:10.1007/978-3-319-76020-9
Molecular characterization of aphid resistance in black raspberry germplasm -
Bushakra, J., Armes, K.A., Vining, K.J., Dossett, M., Lee, J.C., Bradish, C., Fernandez, G., Lee, J., Finn, C.E., Bassil, N.V. 2016. Molecular characterization of aphid resistance in black raspberry germplasm. Acta Horticulture Proceedings. American Society for Horticultural Science (ASHS), Atlanta, GA, August 2016.
The genome of black raspberry (Rubus occidentalis) -
Vanburen, R., Bryant, D., Bushakra, J., Vining, K.J., Edger, P.P., Rowley, E.R., Priest, H.D., Michael, T.P., Lyons, E., Filichkin, S., Dossett, M., Finn, C.E., Bassil, N.V., Mockler, T.C. 2016. The genome of black raspberry (Rubus occidentalis). Plant Journal. 87(6):535-547. doi: 10.1111/tpj.13215.
Evaluations of sustained vigor and winter hardiness of black raspberry (Rubus occidentalis) grown in the Southeastern U.S -
Bradish, C.M., Fernandez, G., Bushakra, J., Bassil, N.V., Finn, C.E., Dossett, M. 2016. Evaluations of sustained vigor and winter hardiness of black raspberry (Rubus occidentalis) grown in the Southeastern U.S. Acta Horticulturae. 1133:129-134.
Black raspberry fruit composition over two years from seedling populations grown at four U.S. geographic locations -
Perkins-Veazie, P., Ma, G., Fernandez, G., Bradish, C.M., Bushakra, J., Bassil, N.V., Weber, C.A., Scheerens, J.C. 2016. Black raspberry fruit composition over two years from seedling populations grown at four U.S. geographic locations. Acta Horticulturae. 1133:335-338.
The genome of black raspberry (Rubus occidentalis) -
Vanburen, R., Bryant, D.W., Bushakra, J., Vining, K.J., Edger, P.P., Rowley, E.R., Priest, H.D., Michael, T.P., Lyons, E., Filichkin, S.A., Dossett, M., Finn, C.E., Bassil, N.V., Mockler, T.C. 2016. The genome of black raspberry (Rubus occidentalis). Plant Journal. 87(6):535-547. doi: 10.1111/tpj.13215.
Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.) Reprint Icon -
Bushakra, J., Lewers, K.S., Staton, M.E., Zhebentyaeva, T., Saski, C.A. 2015. Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.). Biomed Central (BMC) Plant Biology. 15:258-269.
Comparative RNA-seq for the investigation of tolerance to Verticillium wilt in black raspberry -
Bushakra, J., Bassil, N.V., Weiland, G.E., Finn, C.E., Vining, K., Filichkin, S., Dossett, M., Bryant, D., Mockler, T. 2016. Comparative RNA-seq for the investigation of tolerance to Verticillium wilt in black raspberry. Acta Horticulture Proceedings. 1133:103-114. doi: 10.17660/ActaHortic.2016.1133.16.
Molecular evaluation of aphid-resistant black raspberry germplasm for improved durability in black and red raspberry -
Bushakra, J., Dossett, M., Lee, J.C., Lee, J., Bassil, N.V., Finn, C.E. 2015. Molecular evaluation of aphid-resistant black raspberry germplasm for improved durability in black and red raspberry [abstract]. American Society of Horticulture Science Meeting. 2015 American Society for Horticultural Science Annual Conference.
Black raspberry genomic and genetic resource development to enable cultivar improvement -
Bushakra, J., Bassil, N.V., Bryan, D., Mockler, T., Dossett, M., Gilmore, B.S., Peterson, M.E., Bradish, C., Fernandex, G., Lee, J., Finn, C.E. 2015. Black raspberry genomic and genetic resource development to enable cultivar improvement[abstract]. Plant and Animal Genome XXIII Conference.
A genetic linkage map of black raspberry (Rubus occidentalis) and the mapping of Ag4 conferring resistance to the aphid Amphorophora agathonica Reprint Icon -
Bushakra, J., Bryant, D.W., Dossett, M., Vining, K.J., Vanburen, R., Gilmore, B.S., Lee, J., Mockler, T.C., Finn, C.E., Bassil, N.V. 2015. A genetic linkage map of black raspberry (Rubus occidentalis) and the mapping of Ag4 conferring resistance to the aphid Amphorophora agathonica. Theoretical and Applied Genetics. 128:1631-1646.
Identification of QTL associated with flower and runner production in octoploid strawberry (Fragaria × ananassa) Reprint Icon -
Sooriyapathirana, S., Mookerjee, S., Weebadde, C.K., Finn, C.E., Lewers, K.S., Bushakra, J., Luby, J.J., Stewart, P., Neils, S., Hancock, J.F. 2015. Identification of QTL associated with flower and runner production in octoploid strawberry (Fragaria × ananassa). Journal of Berry Research. 5:107-116. doi: 10.3233/JBR-150095.
Developing black raspberry genetic and genomic resources -
Bushakra, J., Bryant, D., Dossett, M., Vining, K., Vanburen, R., Gilmore, B.S., Filichkin, S., Weiland, G.E., Peterson, M.E., Bradish, C.M., Fernandez, G., Lewers, K.S., Graham, J., Lee, J., Mockler, T., Bassil, N.V., Finn, C.E. 2015. Developing black raspberry genetic and genomic resources [abstract]. International Rubus and Ribes Symposium.
Development and transferability of black and red raspberry microsatellite markers from short-read sequences -
Dossett, M., Bushakra, J., Gilmore, B.S., Koch, C., Kemplar, C., Finn, C.E., Bassil, N.V. 2015. Development and transferability of black and red raspberry microsatellite markers from short-read sequences. Journal of the American Society for Horticultural Science. 140(3):243–252.
Toward understanding genotype x environment interactions in black raspberry (Rubus occidentalis L.) -
Bushakra, J., Bradish, C., Weber, C.A., Dossett, M., Fernandez, G., Weiland, G.E., Peterson, M.E., Scheerens, J.C., Robbins, L., Serce, S., Finn, C.E., Bassil, N.V. 2016. Toward understanding genotype x environment interactions in black raspberry (Rubus occidentalis L.). Acta Horticulturae. 1117:25-30. doi: 10.17660/ActaHortic.2016.1117.5.
Genetic mapping of day-neutrality in cultivated strawberry Reprint Icon -
Castro, P., Lewers, K.S., Weebadde, C., Wang, D., Hancock, J., Stewart, P., Bushakra, J., Finn, C.E., Luby, J. 2015. Genetic mapping of day-neutrality in cultivated strawberry. Molecular Breeding. 35(2):79-94.
Sambucus genetic resources at the U.S.D.A. National Clonal Germplasm Repository, Corvallis, Oregon -
Bushakra, J., Bassil, N.V., Finn, C.E., Hummer, K.E. 2015. Sambucus genetic resources at the USDA. National Clonal Germplasm Repository, Corvallis, Oregon. Acta Horticulture Proceedings. 1061:135-14.
Building the genomic infrastructure in black raspberry -
Bryant, D., Bushakra, J., Dossett, M., Vining, K., Filichkin, S., Weiland, G.E., Lee, J., Finn, C.E., Bassil, N.V., Mockler, T. 2014. Building the genomic infrastructure in black raspberry [abstract]. American Society for Horticultural Science Annual Conference.
Toward understanding genotype x environment interactions in black raspberry (Rubus occidentalis L.) -
Bushakra, J., Bradish, C.M., Weber, C.A., Scheerens, J., Dossett, M., Peterson, M.E., Fernandez, G., Lee, J., Bassil, N.V., Finn, C.E. 2014. Toward understanding genotype x environment interactions in black raspberry (Rubus occidentalis L.) [abstract]. American Society for Horticultural Science Annual Conference.
Black raspberry genetic and genomic resources development -
Bushakra, J., Bryant, D., Dossett, M., Gilmore, B.S., Filichkin, S., Weiland, G.E., Peterson, M.E., Bradish, C.M., Fernandez, G., Lewers, K.S., Graham, J., Lee, J., Mockler, T., Bassil, N.V., Finn, C.E. 2014. Black raspberry genetic and genomic resources development [abstract]. Annual Scientific Meeting of the American Society of Plant Biologists.
Sambucus genetic resources at the U.S. National Clonal Germplasm Repository [Abstract] -
Bushakra, J., Bassil, N.V., Finn, C.E., Hummer, K.E. 2013. Sambucus genetic resources at the U.S. National Clonal Germplasm Repository [Abstract]. Symposium Proceedings. 1061:135-145.
Developing a genotyping by sequencing protocol for linkage map construction in black raspberry -