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United States Department of Agriculture

Agricultural Research Service

Jodi A Scheffler
Research Geneticist (Plants)


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Amplicon based RNA interference targeting V2 gene of cotton leaf curl Kokhran virus-Burewala strain can provide resistance in transgenic cotton plants -
Yasmeen, A., Kiani, S., Butt, A., Rao, A.Q., Akram, F., Ahmad, A., Nasir, I.A., Husnain, T., Mansoor, S., Amin, I., Zubair, M., Tahir, M.N., Akhtar, S., Scheffler, J.A., Scheffler, B.E. 2016. Amplicon based RNA interference targeting V2 gene of cotton leaf curl Kokhran virus-Burewala strain can provide resistance in transgenic cotton plants. Molecular Biotechnology. DOI 10.1007/s12033-016-9980-8.
Frequent Occurrence of Tomato Leaf Curl New Delhi Virus in Cotton Leaf Curl Disease Affected Cotton in Pakistan -
Zaidi, S.S., Shafiq, M., Amin, I., Scheffler, B.E., Scheffler, J.A., Briddon, R.W., Mansoor, S. 2016. Frequent Occurrence of Tomato Leaf Curl New Delhi Virus in Cotton Leaf Curl Disease Affected Cotton in Pakistan. PLoS One. DOI:10.1371/journal.pone.0155520.
Evaluating protective terpenoid aldehyde compounds in cotton (Gossypium hirsutum L.) roots -
Scheffler, J.A. 2016. Evaluating protective terpenoid aldehyde compounds in cotton (Gossypium hirsutum L.) roots. American Journal of Plant Sciences. 7:1086-1097.
RNA interference based approach to down regulate Osmoregulators of whitefly Bemisia tabaci: potential technology for the control of whitefly Reprint Icon -
Raza, A., Malik, H., Shafiq, M., Amin, I., Scheffler, J.A., Scheffler, B.E., Mansoor, S. 2016. RNA interference based approach to down regulate Osmoregulators of whitefly Bemisia tabaci: potential technology for the control of whitefly. PLoS One. 11:e0153883.
Measuring diversity in Gossypium hirsutum using the CottonSNP63K Array -
Hinze, L.L., Hulse-Kemp, A., Wilson, I., Zhu, Q., Llewellyn, D., Taylor, J., Spriggs, A., Fang, D.D., Ulloa, M., Burke, J.J., Giband, M., Lacape, J., Van Deynze, A., Udall, J., Scheffler, J.A., Hague, S., Pepper, A., Frelichowski, J.E., Lawley, C., Jones, D., Percy, R.G., Stelly, D. 2016. Measuring diversity in Gossypium hirsutum using the CottonSNP63K Array. In: Proceedings of the Beltwide Cotton Conferences, January 5-7, 2016, New Orleans, Louisiana. 2016 CDROM.
Virus-induced gene silencing (VIGS) in cultivated cotton (Gossypium spp.) using Tobacco rattle virus (TRV) Reprint Icon -
Mustafa, R., Shafiq, M., Mansoor, S., Briddon, R.W., Scheffler, B.E., Scheffler, J.A., Amin, I. 2016. Virus-induced gene silencing (VIGS) in cultivated cotton (Gossypium spp.) using Tobacco rattle virus (TRV). Molecular Biotechnology. 58:65–72, DOI 10.1007/s12033-015-9904-z.
Cotton half seed selection strategy for gossypol and its plus isomer -
Scheffler, J.A., Dowd, M.K., Romano, G.B., Pelitire, S.M. 2015. Cotton half seed selection strategy for gossypol and its plus isomer. Journal of Cotton Science. 19:279-289.
Development of a 63K SNP array for Gossypium and high-density mapping of intra- and inter-specific populations of cotton (G. hirsutum L.) -
Hulse-Kemp, A.M., Lemm, J., Plieske, J., Ashrafi, H., Buyyarapu, R., Fang, D.D., Frelichowski, J.E., Giband, M., Hague, S., Hinze, L.L., Kochan, K., Riggs, R., Scheffler, J.A., Udall, J.A., Ulloa, M., Wang, S., Zhu, Q., Bag, S.K., Bhardwaj, A., Burke, J.J., Byers, R.L., Claverie, M., Gore, M.A., Harker, D.B., Islam, M.S., Jenkins, J.N., Jones, D.C., Lacape, J., Llewellyn, D.J., Percy, R.G., Pepper, A.E., Poland, J.A., Rai, K., Sawant, S.V., Singh, S., Spriggs, A., Taylor, J.M., Wang, F., Yourstone, S.M., Zheng, X., Lawley, C.T., Ganal, M.W., Van Deynze, A., Wilson, L.W., Stelly, D.M. 2015. Development of a 63K SNP array for Gossypium and high-density mapping of intra- and inter-specific populations of cotton (G. hirsutum L.). Genes, Genomes, Genetics. 5:1187-1209. doi:10.1534/g3.115.018416.
Microscopic evaluation of gland initiation and development in cotton ovules -
Scheffler, J.A., Taliercio, E.W., Tonos, J.L., Romano, G.B. 2014. Microscopic evaluation of gland initiation and development in cotton ovules. Journal of Cotton Science. 18:420-429.
The U.S. National Cotton Germplasm Collection – its Contents, Preservation, Characterization, and Evaluation -
Percy, R.G., Frelichowski, J.E., Arnold, M., Campbell, B.T., Dever, J., Fang, D.D., Hinze, L.L., Main, D., Scheffler, J.A., Sheehan, M., Ulloa, M., Yu, J., Yu, J. 2014. The U.S. National Cotton Germplasm Collection – its Contents, Preservation, Characterization, and Evaluation. In: Abdurakhmonov, I. Editor. World Cotton Germplasm Resources. Rijeka, Croatia: InTech. 167-201. Available: http://www.intechopen.com/books/world-cotton-germplasm-resources/the-u-s-national-cotton-germplasm-collection-its-contents-preservation-characterization-and-evaluation.
Mining cotton germplasm resources to fight Cotton Leaf Curl Virus -
Scheffler, J.A., Frelichowski, J.E., Love, J., Malloy, W. 2014. Mining cotton germplasm resources to fight Cotton Leaf Curl Virus. National Cotton Council Beltwide Cotton Conference. Paper No. 15471.
Propects of glandless cotton production in New Mexico -
Odowu, J.O., Zhang, J., Flynn, R.P., Breen Pierce, J., Wedegaertner, T., Scheffler, J.A., Carrillo, T. 2014. Propects of glandless cotton production in New Mexico. National Cotton Council Beltwide Cotton Conference. Paper No. 15041.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres -
Paterson, A.H., Wendel, J.F., Gundlach, H., Guo, H., Jenkins, J., Jin, D., Llewellyn, D., Showmaker, K.C., Shu, S., Udall, J., Duke, M.V., Scheffler, B.E., Scheffler, J.A. 2012. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature. 492:423-428.
Registration of GVS1 GVS2 and GVS3 upland cotton lines with varying gland densities and two near isogenic lines GVS4 and GVS5 -
Scheffler, J.A., Romano, G.B. 2012. Registration of GVS1 GVS2 and GVS3 upland cotton lines with varying gland densities and two near isogenic lines GVS4 and GVS5. Journal of Plant Registrations. 6:190-194.
Evaluating host plant resistance in cotton (Gossypium hirsutum L.) with varying gland densities to tobacco budworm (heliothis virescens F.) and bollworm (Heliocoverpa zea Boddie) in the field and laboratory -
Scheffler, J.A., Romano, G.B., Blanco, C.A. 2012. Evaluating host plant resistance in cotton (Gossypium hirsutum L.) with varying gland densities to tobacco budworm (heliothis virescens F.) and bollworm (Heliocoverpa zea Boddie) in the field and laboratory. Acarology International Congress Proceedings. 3:14-23.
Fiber initiation in eighteen gossypium cultivars and experimental lines -
Romano, G.B., Taliercio, E.W., Turley, R.B., Scheffler, J.A. 2011. Fiber initiation in eighteen gossypium cultivars and experimental lines. Journal of Cotton Science. 15:61-72.
Development of Mississippi cotton breeding lines resistant to reniform and root-koot nematodes via marker assisted selection -
Wallace, T.P., Thaxton, P.S., Gutierrez, O.A., Scheffler, B.E., Stetina, S.R., Scheffler, J.A. 2011. Development of Mississippi cotton breeding lines resistant to reniform and root-koot nematodes via marker assisted selection. National Cotton Council Beltwide Cotton Conference. pp.742.
Nitrogen Metabolism in Cotton Stems and Roots during Reproductive Development -
Taliercio, E.W., Scheffler, J.A., and Kwanyuen, P. 2010. Nitrogen Metabolism in Cotton Stems and Roots during Reproductive. Journal of Cotton Science. 14:107–112.
Characterization of Two Cotton (Gossypium hirsutum) Invertase Genes Reprint Icon -
Taliercio, E.W., Scheffler, J.A., Scheffler, B.E. 2010. Characterization of Two Cotton (Gossypium hirsutum) Invertase Genes. Molecular Biology Reports. 37:3915-3920.
Microsatellites Reveal Genetic Diversity in Reniform Nematode Populations -
Arias De Ares, R.S., Stetina, S.R., Tonos, J.L., Scheffler, J.A., Scheffler, B.E. 2010. Microsatellites Reveal Genetic Diversity in Reniform Nematode Populations. National Cotton Council Beltwide Cotton Conference, New Orleans, Louisiana, January 4-7, 2010
Mapping a reniform nematode (Rotylenchulus reniformis) resistance locus introgressed from Gossypium aridum into upland cotton (G. hirsutum) -
Identification and Genomic Location of a Reniform Nematode (Rotylenchulus reniformis) Resistance locus (Ren_ari) Introgressed from Gossypium aridum into Upland Cotton (G. hirsutum) -
Romano, G.B., Sacks, E.J., Stetina, S.R., Robinson, A.F., Fang, D.D., Gutierrez, O., Scheffler, J.A. 2009. Identification and Genomic Location of a Reniform Nematode (Rotylenchulus reniformis) Resistance locus (Ren_ari) Introgressed from Gossypium aridum into Upland Cotton (G. hirsutum). Theoretical and Applied Genetics. 120:139-150
Reniform nematode (Rotylenchulus reniformis) resistance locus from Gossypium aridum identified and introgressed into upland cotton (G. hirsutum) -
Romano, G.B., Sacks, E.J., Stetina, S.R., Robinson, A.F., Fang, D.D., Gutierrez, O.A., Scheffler, J.A. 2009. Reniform nematode (Rotylenchulus reniformis) resistance locus from Gossypium aridum identified and introgressed into upland cotton (G. hirsutum). Journal of Nematology. 41(4):375-376.
Microsatellites Reveal Genetic Diversity in Rotylenchulus reniformis Populations -
Arias, R.S., Stetina, S.R., Tonos, J.L., Scheffler, J.A., Scheffler, B.E. 2009. Microsatellites Reveal Genetic Diversity in Rotylenchulus reniformis Populations. Journal of Nematology. 41(2): 146-156.
Isolation and characterization of a cotton cdh-like gene -
Taliercio, E.W., Ray, J.D., Scheffler, J.A. 2009. Isolation and characterization of a cotton cdh-like gene. Molecular Biology Reports.
Expression of genes associated with carbohydrate metabolism in cotton stems and roots -
Taliercio, E.W., Romano, G.B., Scheffler, J.A., Ayre, B. 2009. Expression of genes associated with carbohydrate metabolism in cotton stems and roots. Biomed Central (BMC) Plant Biology. 9:11-17.
Differential Gene Expression in Developing Cotton Stems and Roots -
Taliercio, E.W., Scheffler, J.A., Kwanyuen, P. 2009. Differential Gene Expression in Developing Cotton Stems and Roots. Plant and Animal Genome VX Conference Abstracts.
Modifying gossypol in cotton (Gossypium hirsutum L.): a cost effective method for small seed samples -
Scheffler, J.A., Romano, G.B. 2008. Modifying gossypol in cotton (Gossypium hirsutum L.): a cost effective method for small seed samples. Journal of Cotton Science. 12(3):202-209.
Expression of the "glanded-plant and glandless-seed" trait of Australian diploid cottons in different genetic backgrounds -
Benbouza, H., Lognay, G., Scheffler, J.A., Baudoin, J., Mergeai, G.G. 2009. Expression of the "glanded-plant and glandless-seed" trait of Australian diploid cottons in different genetic backgrounds. Euphytica. 165:211-221.
Lowering Seed Gossypol Content in Glanded Cotton (Gossypium hirsutum L.) Lines -
Romano, G.B., Scheffler, J.A. 2009. Lowering Seed Gossypol Content in Glanded Cotton (Gossypium hirsutum L.) Lines. Plant Breeding. 127(6):619-624
Non-GMO Low Seed Gossypol Lines with Glands-Improving Cottonseed for Animal Feed Rations -
SPS Over Expression in Cotton and Its Effect on Lint Yield and Fiber Quality -
Using Biotechnology to Accelerate Breeding of Improved Cotton Varieties -
Low Gossypol Doesn't Always Mean Low Yield and Low Quality -
Low Seed Gossypol Content in Glanted G. hirsutum Lines -
Lint Development and Properties of Fifteen Fuzzless Seed Lines of Upland Cotton (Gossypium hirsutum L.) -
Turley, R.B., Scheffler, J.A., Vaughn, K.C. 2007. Line Development and Properties of Fifteen Fuzzless Seed Lines of Upland Cotton (Gossypium hirsutum L.). Euphytica. (2007) 156:57-65
Analysis of ESTs from Multiple Gossypium hirsutum Tissues and Identification of SSRs -
Taliercio, E.W., Allen, R.D., Essenberg, M., Nguyen, H., Patil, M., Payton, P.R., Phillips, A., Pierce, M., Scheffler, B.E., Turley, R.B., Wang, J., Zhang, D., Scheffler, J.A. 2006. Analysis of ESTs from Multiple Gossypium hirsutum Tissues and Identification of SSRs. Genome. 49:306-319.
EVALUATION OF THE CMD PANEL -
Biotechnology of Accelerated Breeding and Improvement of Cotton Varieties -
New Low Gossypol Cotton Germplasm -
CMD: A Cotton Microsatellite Database Resource for Gossypium Genomics -
Blenda, A.V., Scheffler, J.A., Scheffler, B.E., Palmer, M., Lacape, J., Yu, J., Jesudraui, C., Jung, S., Muthukumar, S., Yellambalase, P., Ficklin, S., Staton, M., Eschelman, R., Ulloa, M., Saha, S., Burr, B., Lui, S., Zhang, T., Fang, D., Pepper, A.E., Kumpatla, S.P., Jacobs, J., Tomkins, J.P., Cantrell, R.G., Main, D. 2006. CMD: A Cotton Microsatellite Database Resource for Gossypium Genomics. Biomed Central (BMC) Genomics. 7:132.
ON THE HUNT FOR NEW MOLECULAR MARKERS: EVALUATING SOYBEAN (GLYCINE MAX) SSR'S FOR COTTON (GOSSYPIUM HIRSUTUM) -
Scheffler, J.A., Scheffler, B.E., Ray, J.D., Taliercio, E.W. 2006. On the hunt for new molecular markers: evaluating soybean (glycine max) ssr's for cotton (gossypium hirsutum). Indian Society for Cotton Improvement. Vol 31: 79-87
Gland Variation and Gossypol Content in Gossypium hirsutum -
Cotton Marker Database -
A Global Assembly of Cotton ESTs -
Udall, J.A., Taliercio, E.W., Turley, R.B., Payton, P.R., Scheffler, J.A., Wendel, J. 2006. A Global Assembly of Cotton ESTs. Genome Research. 16(3):441-450.
MOLECULAR MARKERS RUN ON A TEST PANEL: A DATA SOURCE FOR THE COTTON COMMUNITY -
Scheffler, B.E., Taliercio, E.W., Scheffler, J.A., Yu, J. 2004. Molecular markers run on a test panel: a data source for the cotton community. International Cotton Genome Initiative Workshop.
ON THE HUNT FOR NEW MOLECULAR MARKERS -
MOLECULAR MARKERS RUN ON A TEST PANEL: A DATA SOURCE FOR THE COTTON COMMUNITY -
Scheffler, B.E., Taliercio, E.W., Scheffler, J.A., Yu, J. 2004. Molecular markers run on a test panel: A data source for the cotton community [abstract]. International Cotton Genome Initiative Workshop. Paper No. 18-45.
MOLECULAR MARKER POSSIBILITIES - GOING BEYOND GOSSYPIUM -
Scheffler, J.A., Ray, J.D., Scheffler, B.E., Techan, N. 2004. Molecular marker possibilities - going beyond Gossypium [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1130.
ESTABLISHMENT OF THE STANDARDIZED COTTON MICROSATELLITE DATABASE (CMD) PANEL -
Yu, J., Kohel, R.J., Cantrell, R., Jones, D., Saha, S., Thomkins, J., Main, D., Palmer, M., Pepper, A., Stelly, D., Ulloa, M., Scheffler, J.A. 2004. Establishment of the standardized cotton microsatellite database (cmd) panel. In: Proceedings of the Beltwide Cotton Conferences, January 6-9, 2004, San Antonio, Texas. 2004 CDROM.
NEW POSSIBILITIES FOR SOME OLD GENES: IMPROVED HOST PLANT RESISTANCE IN COTTON -
Scheffler, J.A., Dowd, M.K., Meredith Jr, W.R., Scheffler, B.E. 2004. New possibilities for some old genes: improved host plant resistance in cotton. In: Proceedings of the World Cotton Research Conference III, March 9-13, 2003, Cape Town, South Africa. p. 175-182.
SPS Over Expression in Cotton and Its Effect on Lint Yield and Fiber Quality -
New possibilities for some old genes: improved host plant resistance in cotton -
EVALUATION OF PUTATIVE SEED-SPECIFIC PROMOTERS FOR LUNUM USITATISSIMUM -
DREXLER,H.H., SCHEFFLER,J.A., HEINZ,E., EVALUATION OF PUTATIVE SEED-SPECIFIC PROMOTERS FOR LUNUM USITATISSIMUM, MOLECULAR BREEDING, 2003.
MOLECULAR METHODS IN WEED SCIENCE -
Last Modified: 8/26/2016
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