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ARS Home » Southeast Area » Stuttgart, Arkansas » Dale Bumpers National Rice Research Center » People & Locations » Jinyoung Barnaby

Jinyoung Barnaby
Dale Bumpers National Rice Research Center
Research Plant Physiologist

Phone: (301) 504-8436
Fax:

Room 124
10300 Baltimore Avenue
BLDG 001 BARC-WEST
BELTSVILLE, MD 207050000
Projects
Gene Discovery and Crop Design for Current and New Rice Management Practices and Market Opportunities
In-House Appropriated (D)
  Accession Number: 434318

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Early growth phase and caffeine content response to recent and projected increases in atmospheric carbon dioxide in coffee (Coffea arabica and C. canephora) - (Peer Reviewed Journal)
Vega, F.E., Ziska, L.H., Simpkins, A., Infante, F., Davis, A., Rivera, J., Barnaby, J.Y., Wolf, J.E. 2020. Early growth phase and caffeine content response to recent and projected increases in atmospheric carbon dioxide in coffee (Coffea arabica and C. canephora). Scientific Reports. 10:5875.
Vis/NIR hyperspectral imaging distinguishes sub-population, production environment, and physicochemical properties in rice. Reprint Icon - (Peer Reviewed Journal)
Barnaby, J.Y., Huggins, T.D., Lee, H., McClung, A.M., Pinson, S.R., Oh, M., Bauchan, G.R., Tarpley, L., Lee, K., Kim, M.S., Edwards, J. 2020. Vis/NIR hyperspectral imaging distinguishes sub-population, production environment, and physicochemical properties in rice.. Scientific Reports. https://doi.org/10.1038/s41598-020-65999-7.
Differentiating sub-population, production environment and grain chalk by hyperspectral imaging - (Abstract Only)
Barnaby, J.Y., Huggins, T.D., Lee, H., McClung, A.M., Pinson, S.R., Oh, M., Bauchan, G.R., Tarpley, L., Lee, K., Kim, M.S., Edwards, J. 2020. Differentiating sub-population, production environment and grain chalk by hyperspectral imaging. Rice Technical Working Group Meeting Proceedings.
Exploring naturally existing genetic variation in grain chalk formation in response to temperature and carbon dioxide - (Abstract Only)
Barnaby, J.Y., McClung, A.M., Kim, W., Ziska, L.H., Fleisher, D.H., Reddy, V. 2020. Exploring naturally existing genetic variation in grain chalk formation in response to temperature and carbon dioxide. Rice Technical Working Group Meeting Proceedings.
Genetic loci and agronomic traits impacting grain-arsenic concentrations revealed by GWA and biparental QTL analyses - (Proceedings)
Pinson, S.R., Edwards, J., Jackson, A.K., Heuschele, D.J., Barnaby, J.Y., Tarpley, L., Green, C.E., Codling, E.E., Smith, A.P. 2020. Genetic loci and agronomic traits impacting grain-arsenic concentrations revealed by GWA and biparental QTL analyses. Rice Technical Working Group Meeting Proceedings.
Rice plant biomass traits influencing rhizosphere soil microbial community composition - (Abstract Only)
Fernandez-Baca, C., Rivers, A.R., Maul, J.E., Kim, W., McClung, A.M., Roberts, D.P., Barnaby, J.Y. 2020. Rice plant biomass traits influencing rhizosphere soil microbial community composition. Rice Technical Working Group Meeting Proceedings.
Potassium deficiency influences soybean seed mineral compositions and metabolic profiles across CO2 Reprint Icon - (Peer Reviewed Journal)
Sing, S., Barnaby, J.Y., Reddy, V., Sicher, R.C. 2019. Potassium deficiency influences soybean seed mineral compositions and metabolic profiles across CO2. Journal of Soil Science and Plant Nutrition. 10(12):2113-2133.
The need for geospatial rice modeling assessments in an uncertain climate – a U.S. perspective - (Abstract Only)
Exploring naturally exisiting genetic variation in grain chalk formation in response to changing climate - (Abstract Only)
Barnaby, J.Y., Kim, W., Ziska, L.H., Fleisher, D.H., Reddy, V., McClung, A.M. 2019. Exploring naturally exisiting genetic variation in grain chalk formation in response to changing climate. Mid Atlantic Plant and Molecular Biology Proceedings.
Exploring naturally existing genetic variation in grain chalk formation in response to changing climate - (Abstract Only)
Barnaby, J.Y., Kim, W., Ziska, L.H., Fleisher, D.H., Reddy, V., McClung, A.M. 2019. Exploring naturally existing genetic variation in grain chalk formation in response to changing climate. 36th Annual Mid Atlantic Plant and Molecular Biology Society. Poster #2.
Identifying genomic regions influencing variations in inorganic arsenic accumulation in rice cultivars - (Abstract Only)
Fernandez-Baca, C.P., Codling, E.E., Reddy, V., Pinson, S.R., McClung, A.M., Barnaby, J.Y. 2019. Identifying genomic regions influencing variations in inorganic arsenic accumulation in rice cultivars. 36th Annual Mid Atlantic Plant and Molecular Biology Society. Poster #3.
Cultivar variation in brown rice inorganic arsenic accumulation - (Abstract Only)
Fernandez-Baca, C.P., Codling, E.E., Reddy, V., McClung, A.M., Barnaby, J.Y. 2019. Cultivar variation in brown rice inorganic arsenic accumulation [abstract]. 30th Annual Beltsville Poster Day.
Physiological and metabolic responses of rice to reduced soil moisture: Relationship of water stress tolerance and grain production Reprint Icon - (Peer Reviewed Journal)
Barnaby, J.Y., Rohila, J.S., Henry, C.G., Sicher Jr, R.C., Reddy, V., McClung, A.M. 2019. Physiological and metabolic responses of rice to reduced soil moisture: Relationship of water stress tolerance and grain production. International Journal of Molecular Sciences. https://doi.org/10.3390/ijms20081846.
Rice soil microbiome interactions with plant growth characteristics and methane emissions - (Abstract Only)
Fernandez-Baca, C.P., Rivers, A.R., Maul, J.E., Kim, W., Yarwood, S.A., Roberts, D.P., McClung, A.M., Barnaby, J.Y. 2019. Rice soil microbiome interactions with plant growth characteristics and methane emissions. American Society for Microbiology.
Selection of optimal hyperspectral wavebands for detection of discolored, diseased rice seeds Reprint Icon - (Peer Reviewed Journal)
Baek, I., Kim, M.S., Cho, B., Mo, C., Barnaby, J.Y., McClung, A.M., Oh, M. 2019. Selection of optimal hyperspectral wavebands for detection of discolored, diseased rice seeds. Applied Sciences. 9:1027. https://doi.org/10.3390/app9051027.
Covariation among root biomass, shoot biomass, and tiller number in three rice populations Reprint Icon - (Peer Reviewed Journal)
Barnaby, J.Y., Pinson, S.R., Chun, J., Bui, L.T. 2019. Covariation among root biomass, shoot biomass, and tiller number in three rice populations. Crop Science. 59:1516-1530. https://doi.org/10.2135/cropsci2018.09.0595.
Combined effects of drought and CO2 enrichment on foliar metabolites of potato (Solanum tuberosum L.) cultivars Reprint Icon - (Peer Reviewed Journal)
Barnaby, J.Y., Fleisher, D.H., Sicher Jr, R.C., Reddy, V. 2018. Combined effects of drought and CO2 enrichment on foliar metabolites of potato (Solanum tuberosum L.) cultivars. Journal of Plant Interactions. https://doi.org/10.1080/17429145.2018.1562110.
Correlation between methane (CH4) emissions and root aerenchyma of rice varieties - (Peer Reviewed Journal)
Kim, W., Bui, L., Chun, J., McClung, A.M., Barnaby, J.Y. 2018. Correlation between methane (CH4) emissions and root aerenchyma of rice varieties. Plant Breeding and Biotechnology. 6:381-390.
Using high-throughput genotyping and phenotyping to dissect rice-soil microbiome interactions affecting GHG emissions and identify candidate genes affecting rice grain quality - (Abstract Only)
Barnaby, J.Y., McClung, A.M., Kim, W. 2018. Using high-throughput genotyping and phenotyping to dissect rice-soil microbiome interactions affecting GHG emissions and identify candidate genes affecting rice grain quality [abstract].RDA-USDA Collaborative Meeting.
Profiles of rhizosphere soil microbial composition affecting methane emissions - (Abstract Only)
Barnaby, J.Y., Kim, W., Rivers, A.R., McClung, A.M., Maul, J.E. 2018. Profiles of rhizosphere soil microbial composition affecting methane emissions. 5th International Rice Conference Abstract. Available: http://ricecongress2018.irri.org/sites/default/files/Profiles%20of%20Rhizosphere%20soil%20microbial%20composition%20affecting%20methane%20emmissions.pdf.
Understanding the physiological and molecular mechanisms of rice-microbial interactions that produce methane - (Abstract Only)
Woojae, K., Liem, B., Chun, J., McClung, A.M., Adviento-Borbe, A.A., Rivers, A.R., Pinson, S.R., Maul, J.E., Reddy, V., Barnaby, J.Y. 2018. Understanding the physiological and molecular mechanisms of rice-microbial interactions that produce methane. 29th Annual Beltsville Poster Day Book, pg 33.
Dissection of genetic architecture of grain chalk using NIR spectroscopy - (Proceedings)
Barnaby, J.Y., Huggins, T.D., Lee, H., Oh, M., McClung, A.M., Pinson, S.R., Tarpley, L., Kim, M.S., Edwards, J. 2018. Dissection of genetic architecture of grain chalk using NIR spectroscopy. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. Electronic Publication.
Interspecific variation in physiological and foliar metabolic responses to reduced soil water availability - (Proceedings)
Barnaby, J.Y., McClung, A.M., Rohila, J.S., Henry, C.G., Ziska, L.H., Sicher Jr, R.C. 2018. Interspecific variation in physiological and foliar metabolic responses to reduced soil water availability. In: Proceedings of the 37th Rice Technical Working Group Meeting, February 19-22, 2018, Long Beach, California. p 77.
Root biomass as a major means of affecting methane emissions - (Proceedings)
Kim, W., Barnaby, J.Y., Liem, B., Chun, J., McClung, A.M., Adviento-Borbe, A.A., Pinson, S.R. 2018. Root biomass as a major means of affecting methane emissions. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. Electronic Publication.
Relationships between shoot and root growth support indirect selection for increased root biomass - (Proceedings)
Pinson, S.R., Barnaby, J.Y., Bui, L.T., Chun, J. 2018. Relationships between shoot and root growth support indirect selection for increased root biomass. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. Electronic Publication.
The effect of elevated CO2 on arsenic accumulation in diverse ecotypes of Arabidopsis thaliana - (Peer Reviewed Journal)
Fernandez, V., Barnaby, J.Y., Tomecek, M.B., Codling, E.E., Ziska, L.H. 2017. The effect of elevated CO2 on arsenic accumulation in diverse ecotypes of Arabidopsis thaliana. Journal of Plant Nutrition. 41:645-653.
Differing drought effects on potato genotypes grown in naturally sunlit Soil-Plant Atmosphere-Research (SPAR) chambers - (Abstract Only)
GENOME WIDE ASSOCIATION STUDY DISSECTING GENETIC ARCHITECTURE OF GRAIN PHYSICOCHEMICAL TRAITS IN RICE - (Abstract Only)
Barnaby, J.Y., Huggins, T.D., McClung, A.M., Pinson, S.R., Edwards, J., Tarpley, L., Kim, M.S., Lee, H., Oh, M. 2017. Genome wide association study dissecting genetic architecture of grain physicochemical traits in rice. 34th Annual Mid Atlantic Plant Molecular Biology Society Conference . p.15. Program Booklet. http://wp.towson.edu/mapmbs/files/2017/08/34th-MAPMBS-program-2017-26ysoam.pdf
Research perspectives overview at DBNRRC to maintain sustainable food security - (Abstract Only)
Barnaby, J.Y., Mcclung, A.M. 2017. Research perspectives overview at DBNRRC to maintain sustainable food security. Meeting Abstract. 6th RAVL Partnership Workshop and 1st Meeting for Korea-American ARS Scientists. Beltsville, MD, June19-22, 2017. Page 15.
Evaluation of Genetic Variation in Rice to Mitigate Methane Emissions - (Abstract Only)
Barnaby, J.Y., McClung, A.M., Adviento-Borbe, A.A., Pinson, S.R.M., Kim, W., Jun, J., Kim, H. 2017. Evaluation of Genetic Variation in Rice to Mitigate Methane Emissions. Meeting Abstract. Joint Meeting of RDA and USDA, Jeollabuk-do, Republic of Korea, May 15-19, 2017. Pages 37-48.
Fluorescence hyperspectral imaging technique for the foreign substance detection on fresh-cut lettuce - (Peer Reviewed Journal)
Mo, C., Kim, G., Kim, M.S., Lim, J., Cho, H., Barnaby, J.Y., Cho, B. 2017. Fluorescence hyperspectral imaging technique for the foreign substance detection on fresh-cut lettuce. Journal of the Science of Food and Agriculture. 97(12):3985-3993.
Varying response of the concentration and content of soybean seed mineral elements, carbohydrates, organic acids, amino acids, protein, and oil to phosphorus starvation and CO2 enrichment - (Peer Reviewed Journal)
Singh, S.K., Barnaby, J.Y., Reddy, V., Sicher Jr, R.C. 2016. Varying response of the concentration and content of soybean seed mineral elements, carbohydrates, organic acids, amino acids, protein, and oil to phosphorus starvation and CO2 enrichment. Frontiers in Plant Science. 7(1967):1-13. doi: 10.3389/fpls.2016-01967.
Using rice genetic diversity for adaptions to and mitigation of changing environments - (Abstract Only)
Barnaby, J.Y., McClung, A.M., Adviento-Borbe, A.A., Pinson, S.R.M., Ziska, L.H. 2017. Using rice genetic diversity for adaptions to and mitigation of changing environments. Meeting Abstract. 2nd Agriculture and Climate Change Conference March 26-28, 2017, Melia Sitges, Spain. page 19.
Soybean grown under elevated CO2 benefits the most at low temperature than at high temperature stress: varying response of photosynthetic limitations, leaf metabolites, growth, and seed yield - (Peer Reviewed Journal)
Xu, G., Singh, S., Reddy, V., Barnaby, J.Y., Sicher Jr, R.C., Li, T. 2016. Soybean grown under elevated CO2 benefits the most at low temperature than at high temperature stress: varying response of photosynthetic limitations, leaf metabolites, growth, and seed yield. Journal of Plant Physiology. 205:20-32. doi: 10.1016j.jplph.2016.08.003.
Effects of growth temperature and carbon dioxide enrichment on soybean seed components at different stages of development - (Peer Reviewed Journal)
Xu, G., Singh, S., Barnaby, J.Y., Buyer, J.S., Reddy, V., Sicher Jr, R.C. 2016. Effects of growth temperature and carbon dioxide enrichment on soybean seed components at different stages of development. Plant Physiology and Biochemistry. 108: 313-322.
Transcriptome analysis of soybean leaf abscission identifies transcriptional regulators of organ polarity and cell fate - (Peer Reviewed Journal)
Kim, J., Barnaby, J.Y., Yang, R., Sicher Jr, R.C., Chang, C., Tucker, M.L. 2016. Transcriptome analysis of soybean leaf abscission identifies transcriptional regulators of organ polarity and cell fate. Frontiers in Plant Science. 7:125.
Effects of CO2 enrichment and drought pretreatment on metabolite responses to water stress and subsequent rehydration using potato tubers from plants grown in sunlit SPAR chambers Reprint Icon - (Peer Reviewed Journal)
Barnaby, J.Y., Fleisher, D.H., Baligar, V.C., Reddy, V., Sicher Jr, R.C. 2015. Effects of CO2 enrichment and drought pretreatment on metabolite responses to water stress and subsequent rehydration using potato tubers from plants grown in sunlit SPAR chambers. Journal of Plant Physiology. 189:126-136.
Growth and physiological responses of Chinese cabbage cv. 'Chungwang' to different irradiances during early-to-middle growth stages - (Peer Reviewed Journal)
Carbon dioxide enrichment restrains the impact of drought on three maize hybrids differing in water stress tolerance in water stressed environments - (Peer Reviewed Journal)
Barnaby, J.Y., Sicher Jr, R.C., Kim, M.S., Reddy, V. 2014. Carbon dioxide enrichment restrains the impact of drought on three maize hybrids differing in water stress tolerance in water stressed environments. International Journal of Plant Biology. 5:5535.
Potato gas exchange response to drought cycles under varying radiation environment and CO2 - (Peer Reviewed Journal)
Fleisher, D.H., Barnaby, J.Y., Sicher Jr, R.C., Resop, J., Timlin, D.J., Reddy, V. 2014. Potato gas exchange response to drought cycles under varying radiation environment and CO2. Agronomy Journal. 106:2024-2034. DOI: 10.2134/AGRONJ.14.0220.
Combined effects of CO2 enrichment, changes in diurnal light level and water stress on foliar metabolites of potato plants grown in naturally sunlit controlled environment chambers - (Peer Reviewed Journal)
Barnaby, J.Y., Fleisher, D.H., Reddy, V., Sicher Jr, R.C. 2015. Combined effects of CO2 enrichment, changes in diurnal light level and water stress on foliar metabolites of potato plants grown in naturally sunlit controlled environment chambers. Physiologia Plantarium. 153:243-252.
Water-deficiency effects on single leaf gas exchange and on C4 pathway enzymes of maize genotypes with differing abiotic stress tolerance - (Peer Reviewed Journal)
Sicher, Jr., R.C., Bunce, J.A., Barnaby, J.Y., Bailey, B.A. 2015. Water-deficiency effects on single leaf gas exchange and on C4 pathway enzymes of maize genotypes with differing abiotic stress tolerance. Photosynthetica. 53:3-10.
Drought responses of foliar metabolites in three maize hybrids differing in water stress tolerance - (Peer Reviewed Journal)
Barnaby, J.Y., Kim, M.S., Bauchan, G.R., Bunce, J.A., Reddy, V., Sicher Jr, R.C. 2013. Drought responses of foliar metabolites in three maize hybrids differing in water stress tolerance. PLoS One. 8(10):1-10.
Effects of elevated CO2 and cyclic drought on potato under varying radiation regimes - (Peer Reviewed Journal)
Fleisher, D.H., Barnaby, J.Y., Sicher, Jr., R.C., Resop, J.P., Timlin, D.J., Reddy, V. 2013. Effects of elevated CO2 and cyclic drought on potato under varying radiation regimes. Agricultural and Forest Meteorology. 171-172:270-280.
Effects of ambient and elevated carbon dioxide on the responses of leaf gas exchange, multispectral imaging and primary metabolism of water-stress resistant transgenic maize to drought - (Abstract Only)
Barnaby, J.Y., Kim, M.S., Cho, B., Reddy, V., Sicher Jr, R.C. 2012. Effects of ambient and elevated carbon dioxide on the responses of leaf gas exchange, multispectral imaging and primary metabolism of water-stress resistant transgenic maize to drought. BARC Poster Day.
Comparison of periodic drought on potato at two different CO2 levels - (Abstract Only)
Plant response to elevated C02 ()
Barnaby, J.Y., Ziska, L.H. 2012. Plant response to elevated C02. Encyclopedia of Life Sciences. DOI: 10.1002/9780470015902.a0023718.
Impact of carbon dioxide enrichment on the responses of maize leaf transcripts and metabolites to water stress - (Peer Reviewed Journal)
Sicher Jr, R.C., Barnaby, J.Y. 2012. Impact of carbon dioxide enrichment on the responses of maize leaf transcripts and metabolites to water stress. Physiologia Plantarum. 144:238-253.