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10x WGS of ISGC75 by mixed groups

To view DNA sequence data for an animal or a mixed group:


Breed group Animal ID Region of Prominance Public links .bam file ID
ISGC75_Group1_8tracks URL        
Afshari AFS32 NW Iran URL 7622068183
Afshari AFS33 NW Iran URL 7622068151
African White Dorper AW454 South Africa URL 7622068137
African White Dorper AWD1 South Africa URL 7622068184
African White Dorper AWD3 South Africa URL 7622068157
Awassi, Turkish AWT1 Turkey URL 7622068199
Awassi, Turkish AWT2 Turkey URL 7622068164
Brazilian Creole BCS1 Brazil URL 7622068154
ISGC75_Group2_8tracks URL        
Brazilian Creole BCS3 Brazil URL 7622068165
Bangladeshi BGE2 Bangladesh URL 7622068136
Bangladeshi BGE4 Bangladesh URL 7622068158
Morada Nova BMN3 Brazil URL 7622068200
Morada Nova BMN4 Brazil URL 7622068138
Santa Inês BSI3 Brazil URL 7622068159
Santa Inês BSI4 Brazil URL 7622068191
Castellana CAS1 Spain URL 7622068174
ISGC75_Group3_8tracks URL        
Castellana CAS3 Spain URL 7622068193
Cine Capari CC50 Turkey URL 7622068153
Changthangi CHA02 Jammu and Kashmir URL 7622068135
Changthangi CHA05 Jammu and Kashmir URL 7622068192
Churra CHU1 Spain URL 7622068180
Churra CHU2 Spain URL 7622068167
Cheviot CHVA1 England-Scotland URL 7622068172
Cheviot CHVC1 England-Scotland URL 7622068141
ISGC75_Group4_8tracks URL        
Welsh Mountain, Dolgellau DWM1 Wales URL 7622068187
Ethiopian Menz EMZ1 Ethiopia URL 7622068173
Finnsheep FIN1 Finland URL 7622068171
Finnsheep FIN4 Finland URL 7622068198
Garole, Banglegdeshi GAR14 Bangledesh URL 7622068139
Garole, Indian  GAR4 India URL 7622068140
Gulf Coast native GCN4 USA Gulf Coast URL 7622068207
Gulf Coast native GCN5 USA Gulf Coast URL 7622068166
ISGC75_Group5_8tracks URL        
Garut GUR4 Indonesia URL 7622068175
Garut GUR5 Indonesia URL 7622068177
Karya KR4 Turkey URL 7622068194
Karakas KRS3 Turkey URL 7622068160
Karakas KRS5 Turkey URL 7622068176
Lacaune, Meat LAC1 France URL 7622068178
Lacaune, Milk LAC84 France URL 7622068142
Merino MER454 Spain URL 7622068202
ISGC75_Group6_8tracks URL        
Merino MERA1 Spain URL 7622068179
Merino MERC1 Spain URL 7622068203
Norduz NDZ1 Turkey URL 7622068161
Norduz NDZ4 Turkey URL 7622068162
Afrikaner, Namaqua NQA11 South Africa URL 7622068143
Ovis canadensis OCAN1 Canada-USA URL 7622068201
Ovis canadensis OCAN2 Canada-USA URL 7622068186
Ovis canadensis OCAN3 Canada-USA URL 7622068147
ISGC75_Group7_9tracks URL        
Ovis dalli ODAL1 Canada-USA URL 7622068185
Ovis dalli ODAL2 Canada-USA URL 7622068144
Ojalada OJA4 Spain URL 7622068155
Ojalada OJA5 Spain URL 7622068152
Dorset, Poll PD454 USA URL 7622068181
Afrikaner, Ronderib RDA2 South Africa URL 7622068188
Afrikaner, Ronderib RDA4 South Africa URL 7622068168
Romney ROM454 England URL 7622068205
Salz SALA1 Spain URL 7622068169
ISGC75_Group8_9tracks URL        
Salz SALA2 Spain URL 7622068189
Salz SALC1 Spain URL 7622068206
Scottish Blackface SBF454 United Kingdom URL 7622068170
Sakiz SKZ1 Turkey URL 7622068190
Sakiz SKZ4 Turkey URL 7622068196
Swiss Mirror SMS2 Switzerland URL 7622068204
Sumatra SUM2 Sumatra URL 7622068146
Sumatra SUM7 Sumatra URL 7622068182
Swiss White Alpine SWAA27 Switzerland URL 7622068145
ISGC75_Group9_9tracks URL        
Swiss White Alpine SWAA29 Switzerland URL 7622068132
Swiss White Alpine SWAN3 Switzerland URL 7622068195
Swiss White Alpine SWAN4 Switzerland URL 7622068156
Texel TEX454 Netherlands URL 7622068148
Welsh Mountain, Tregaron TWM1 Wales URL 7622068149
Valais Blacknose VBS2 Switzerland URL 7622068197
Welsh Hardy Speckled Face WHSF1 Wales URL 7622068150
Tibetan, Northern ZB08 Tibet URL 7622068163
Tibetan, Eastern ZD11 Tibet URL 7622068129

A description of this ISGC panel from Heaton  et al. (2014) SNPs for Parentage Testing and Traceability in Globally Diverse Breeds of Sheep. PLoS ONE 9(4): e94851:

 "The ISGC had selected 75 animals for WGS to extend its investigation of genetic diversity and selection in the world’s sheep breeds [10]. The majority of animals (61%) were drawn from the previous study [10] to capture the diversity present across Ovis aries. Additional animals were recruited that either had previously been used in the construction of genomic resources for the sheep genome [26], carried disease genes, or were wild sheep sampled from the Bighorn (Ovis Canadensis) and Thinhorn (Ovis dalli) populations of North America. Each genome was sequenced to a depth of approximately 10-fold mapped read coverage with Illumina GAII (unpublished). Prepublication access to the .bam files was provided under the Toronto guidelines for data users [27]. In total, 70 domestic sheep from 43 breed groups were used to derive genotypes for the candidate SNPs and their nearby genomic regions. These data were combined with Sanger sequence data from a U.S. panel of 96 sheep (described below) to comprise a data set from 166 sheep totaling 54 breed groups."