Cell Lines |
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10x WGS of Livestock Cell Lines Mapped to Cattle
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To view DNA sequence data for a cell line:
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Download and install a desktop version of IGV
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Download the ARS-UCD1.2 genome files from Ensemble or here: [.fa, .gtf, .fai]
- Use these files to create a .genome file named "ARS-UCD1.2" in IGV
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Copy a URL link address (right-click) and paste into IGV: File> "Load from URL..."
- Note: left-clicking on a URL will start a 30GB .bam file download
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Madin-Darby Bovine Kidney Cells (MDBK) mapped to ARS-UCD1.2: URL link
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Cells Resistant to Infection with Bovine viral diarrhea virus (CRIB cell line, derivative of MDBK) mapped to ARS-UCD1.2: URL link Workman et al. 2021
- Bovine Leukocyte 3 Cells (BL3), BioProject PRJNA325058, mapped to ARS-UCD1.2: URL link
* Requires Java Runtime Environment
Reads mapped to ARS-UCD1.2 bovine genome assembly of Hereford female L1 Dominette 01449