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ARS Home » Midwest Area » Columbia, Missouri » Plant Genetics Research » People & Locations » Yong-Qiang An (Charles)

Yong-Qiang An (Charles)
Plant Genetics Research
Research Molecular Biologist

Phone: (314) 587-1669
Fax: (314) 587-1769

975 N WARSON RD
St. Louis , MO 63132
Projects
Soybean Seed Quality Improvement through Translational Genomics
In-House Appropriated (D)
  Accession Number: 434365
Developing Soybean Cultivars and Germplasm with Increased Protein Quantity and Quality using Diversity in Cultivated and Wild Soybeans
Reimbursable Cooperative Agreement (R)
  Accession Number: 431955
Molecular and Genetic Characterization of Transcriptional Regulatory Program Underlying Seed Reserve Production
Non-Assistance Cooperative Agreement (S)
  Accession Number: 430762

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Genetic architecture of soybean yield and agronomic traits -
Diers, B.W., Specht, J., Rainey, K., Cregan, P., Song, Q., Ramasubramanian, V., Graef, G., Nelson, R., Schapaugh, W., Wang, E., Shannon, G., Mchale, L., Kantartzi, S., Xavier, A., Mian, R.M., Stupar, R., Michno, J., An, Y., Goettel, W., Lipka, A.E., Hyten, D., Cary, T., Beavis, W.D. 2018. Genetic architecture of soybean yield and agronomic traits. G3, Genes/Genomes/Genetics. 8(10):3367-3375. https://doi.org/10.1534/g3.118.200332.
Dynamic DNA methylation in plant growth and development -
Bartels, A., Han, Q., Nair, P., Stacey, L., Gaynier, H., Mosley, M., Huang, Q., Pearson, J., Hsieh, T., An, Y., Xiao, W. 2018. Dynamic DNA methylation in plant growth and development. International Journal of Molecular Sciences. 19(7):2144. https://doi.org/10.3390/ijms19072144.
Changes of seed weight, fatty acid composition, oil and protein contents from different peanut FAD2 genotypes at different seed developmental and maturation stages -
Wang, M.L., Chen, C.Y., Tonnis, B.D., Pinnow, D.L., Davis, J., An, Y., Dang, P.M. 2018. Changes of seed weight, fatty acid composition, oil and protein contents from different peanut FAD2 genotypes at different seed developmental and maturation stages. Journal of Agricultural and Food Chemistry. 66(14):3658-3665. DOI: 10.1021/acs.jafc.8b01238.
Integrating GWAS and gene expression data for functional characterization of resistance to white mould in soya bean -
Wen, Z., Tan, R., Zhang, S., Collins, P.J., Yuan, J., Du, W., Gu, C., Ou, S., Song, Q., An, Y., Boyse, J.F., Chilvers, M.I., Wang, D. 2018. Integrating GWAS and gene expression data for functional characterization of resistance to white mould in soya bean. Plant Biotechnology. https://doi.org/10.1111/pbi.12918.
Dynamic changes of genome-wide DNA methylation during soybean seed development Reprint Icon -
An, Y., Goettel, H.W., Han, Q., Bartels, A., Liu, Z., Xiao, W. 2017. Dynamic changes of genome-wide DNA methylation during soybean seed development. Scientific Reports. 7:12263. https://doi.org/10.1038/s41598-017-12510-4.
Fine mapping of the soybean aphid-resistance genes Rag6 and Rag3c from Glycine soja 85-32 Reprint Icon -
Zhang, S., Zhang, Z., Wen, Z., Gu, C., An, Y., Bales, C., DiFonzo, C., Song, Q., Wang, D. 2017. Fine mapping of the soybean aphid-resistance genes Rag6 and Rag3c from Glycine soja 85-32. Theoretical and Applied Genetics. 130(12):2601-2615. https://doi.org/10.1007/s00122-017-2979-0.
Genetic characterization of the soybean Nested Association Mapping (NAM) population -
Song, Q., Yan, L., Quigley, C.V., Jordan, B.D., Fickus, E.W., Schroeder, S.G., Song, B., An, Y., Hyten, D., Nelson, R.L., Rainey, K., Beavis, W.D., Specht, J., Diers, B., Cregan, P. 2017. Genetic characterization of the soybean Nested Association Mapping (NAM) population. The Plant Genome. 10(2). doi: 10.3835/plantgenome2016.10.0109.
Validation of the quantitative trait locus underlying soybean plant height using residual heterozygous lines and near isogenic lines across multi-environments -
Yan, L., Zhang, Y., Song, Q., Cregan, P., Yang, C., An, Y., Wu, C., Chen, Q., Liu, B., Di, R., Zhang, M. 2017. Validation of the quantitative trait locus underlying soybean plant height using residual heterozygous lines and near isogenic lines across multi-environments. Euphytica. 213:32. doi:10.1007/s10681-016-1833.
Genetic separation of southern and northern soybean breeding programs in North America and their associated allelic variation at four maturity loci Reprint Icon -
Goettel, H.W., An, Y. 2017. Genetic separation of southern and northern soybean breeding programs in North America and their associated allelic variation at four maturity loci. Molecular Breeding. 37(1):8. doi:10.1007/s11032-016-0611-7.
Identification and comparative analysis of differential gene expression in soybean leaf tissue under drought and flooding stress revealed by RNA-Seq Reprint Icon -
Chen, W., Yao, Q., Patil, G., Agarwal, G., Deshmukh, R.K., Lin, L., Wang, B., Wang, Y., Prince, S.J., Song, L., Xu, D., An, Y., Valliyodan, B., Varshney, R.K., Nguyen, H.T. 2016. Identification and comparative analysis of differential gene expression in soybean leaf tissue under drought and flooding stress revealed by RNA-Seq. Frontiers in Plant Science. 7:1044. doi:10.3389/fpls.2016.01044.
Identification and characterization of large DNA deletions affecting oil quality traits in soybean seeds through transcriptome sequencing analysis Reprint Icon -
Goettel, H.W., Ramirez, M.E., Upchurch, R.G., An, Y. 2016. Identification and characterization of large DNA deletions affecting oil quality traits in soybean seeds through transcriptome sequencing analysis. Theoretical and Applied Genetics. 129(8):1577-1593. doi:10.1007/s00122-016-2725-z.
Characterization of newly identified natural high-oleate mutant from the USDA cultivated peanut germplasm collection -
Wang, M.L., Tonnis, B.D., An, Y., Pinnow, D.L., Chen, C.Y., Pederson, G.A. 2016. Characterization of newly identified natural high-oleate mutant from the USDA cultivated peanut germplasm collection.[Abstract] Plant and Animal Genome Conference. Paper No. P1033.
Newly identified natural high-oleate mutant from Arachis hypogaea L. subsp. Hypogaea -
Wang, M.L., Tonnis, B.D., An, Y., Pinnow, D.L., Tishchenko, V., Pederson, G.A. 2015. Newly identified natural high-oleate mutant from Arachis hypogaea L. subsp. Hypogaea. Molecular Breeding. 35:186. doi: 10.1007/s11032-015-0377-3.
Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content Reprint Icon -
Goettel, H.W., Xia, E., Upchurch, R.G., Wang, M.L., Chen, P., An, Y. 2014. Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content. Biomed Central (BMC) Genomics. 15:299.
Differential expression of proteins in response to molybdenum deficiency in winter wheat leaves under low-temperature stress Reprint Icon -
Sun, X., Tan, Q., Nie, Z., Hu, C., An, Y. 2014. Differential expression of proteins in response to molybdenum deficiency in winter wheat leaves under low-temperature stress. Plant Molecular Biology Reporter. 32(2):1057-1069.
Conserved transcriptional regulatory programs underlying rice and barley germination Reprint Icon -
Lin, L., Tian, S., Kaeppler, S., Liu, Z., An, Y. 2014. Conserved transcriptional regulatory programs underlying rice and barley germination. PLoS One. 9(2):e87261.doi:10.1371/journal.pone.0087261.
Identification of transcript polymorphisms for seed quality improvement by exploring soybean genetic diversity Reprint Icon -
An, Y., Goettel, H.W., Upchurch, R.G., Wang, M.L., Xia, E., Liu, Z., Chen, P. 2014. Identification of transcript polymorphisms for seed quality improvement by exploring soybean genetic diversity (abstract). Plant & Animal Genome. Paper No. 036.
Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons Reprint Icon -
Goettel, H.W., Liu, Z., Xia, J., Zhang, W., Zhao, P.X., An, Y. 2014. Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons. PLoS One. doi: 10.1371/journal.pone.0086153.
Two tobacco AP1-like gene promoters with highly specific, tightly regulated and uniquely expressed activity during floral transition, initiation and development -
Zhang, J., Yan, G., Wen, Z., An, Y., Singer, S., Liu, Z. 2013. Two tobacco AP1-like gene promoters with highly specific, tightly regulated and uniquely expressed activity during floral transition, initiation and development. Planta. 239:469-478.
Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs -
Zhu, H., Xia, R., Zhao, B., An, Y., Dardick, C.D., Callahan, A.M., Liu, Z. 2012. Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs. Biomed Central (BMC) Plant Biology. DOI: 10.1186/1471-2229-12-149.
Apple miRNAs and tasiRNAs with novel regulatory networks Reprint Icon -
Xia, R., Zhu, H., An, Y., Beers, E., Liu, Z. 2012. Apple miRNAs and tasiRNAs with novel regulatory networks. Genome Biology. 13(6):R47.
Identification of genes/loci and functional markers for seed oil quality improvement by exploring soybean genetic diversity -
Chen, P., Upchurch, R.G., An, Y. 2012. Identification of genes/loci and functional markers for seed oil quality improvement by exploring soybean genetic diversity [abstract]. Cellular and Molecular Biology of Soybean Biennial Conference. Available: http://www.osc.iastate.edu/mnet/soybean/level7.html.
Transcriptional regulatory programs underlying barley germination and regulatory functions of Gibberellin and abscisic acid -
An, Y., Lin, L. 2011. Transcriptional regulatory programs underlying barley germination and regulatory functions of Gibberellin and abscisic acid. Biomed Central (BMC) Plant Biology. 11:105.
Whole genome co-expression analysis of soybean cytochrome P450 genes identifies nodulation-specific P450 monooxygenases -
Guttikonda, S.K., Joshi, T., Bisht, N., Chen, H., An, Y., Pandey, S., Xu, D., Yu, O. 2010. Whole genome co-expression analysis of soybean cytochrome P450 genes identifies nodulation-specific P450 monooxygenases. Biomed Central (BMC) Plant Biology. 10:243.
Gene Expression Browser: Large-Scale and Cross-Experiment Microarray Data Management, Search & Visualization -
Zhang, M., Zhang, Y., Liu, L., Yu, L., Tsang, S., Tan, J., Yao, W., Kang, M., An, Y., Fan, X. Gene Expression Browser: Large-Scale and Cross-Experiment Microarray Data Management, Search & Visualization. BMC Bioinformatics.11(433)1471-2105.
Systems Characterization of Gene Reuglatory Networks Underlying Seed Maturation for Soybean Oil Improvement. -
Loss-of-function of DELLA protein SLN1 activates GA signaling in barley aleurone -
The Strong Expression and Conserved Regulation of ACT2 in Arabidopsis and Physcomitrella Patens -
An, Y., Meagher, R.B. 2010. The Strong Expression and Conserved Regulation of ACT2 in Arabidopsis and Physcomitrella Patens. Plant Molecular Biology Reporter. 28:481-490.
Biological Networks Underlying Soybean Seed Oil Composition and Content -
An, Y. 2009. Biological Networks Underlying Soybean Seed Oil Composition and Content. Soybean Research World Conference Proceedings. p. 373
TRANSCRIPTIONAL RESPONSE TO GIBBERELLIN AND ABSCISIC ACID IN BARLEY ALEURONE -
An, Y., Chen, K. 2006. Transcriptional response to gibberellin and abscisic acid in barley aleurone. Journal of Integrative Plant Biology. 48:591-612.
CONSERVED AND DIVERGENT TRANSCRIPTIONAL REGULATION OF SEED GERMINATION, AND THE REGULATORY ROLES OF GIBBERELLIN AND ABSCISIC ACID IN BARLEY GERMINATION -
An, Y., Lin, L., Chen, K., Tian, S., Kaeppler, S. Conserved and divergent transcriptional regulation of seed germination, and the regulatory roles of gibberellin and abscisic acid in barley germination. Plant Biology 2005 Meeting. Paper No. 33005.
GENETIC DISSECTION OF GIBBERELLIN SIGNAL TRANSDUCTION PATHWAY IN BARLEY ALEURONE -
An, Y., Chen, K., Kaeppler, S. Genetic dissection of gibberellin signal transduction pathway in barley aleurone. XIII International Plant & Animal Genome Conference. p. P770.
CONSERVED AND DIVERGENT TRANSCRIPTIONAL REGULATION OF SEED GERMINATION AND SEEDLING GROWTH IN BARLEY AND ARABIDOPSIS -
An, Y., Lin, L., Tian, S., Kaeppler, S. Conserved and divergent transcriptional regulation of seed germination and seedling growth in barley and arabidopsis. XIII International Plant & Animal Genome Conference. p. P663.
GLOBAL GENE EXPRESSION IN SEED GERMINATION AND SEEDLING GROWTH -
An, Y. 2004. Global gene expression in seed germination and seedling growth. Czech Journal of Genetics and Plant Breeding, Book of abstracts, 9th International Barley Genetics Symposium. p. 61.