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ARS Home » Midwest Area » Columbia, Missouri » Plant Genetics Research » People & Locations » Yong-Qiang An (Charles)

Yong-Qiang An (Charles)
Plant Genetics Research
Research Molecular Biologist

Phone: (314) 587-1669
Fax: (314) 587-1769

975 N WARSON RD
St. Louis, MO 63132
Projects
Discovery of Trait Genes, Alleles, Germplasm and Functional Markers for Soybean Seed Quality Improvement
Cooperative Agreement (A)
  Accession Number: 437812
Soybean Seed Quality Improvement through Translational Genomics
In-House Appropriated (D)
  Accession Number: 434365
Discovery of Trait Genes, Alleles, Germplasm and Functional Markers for Soybean Seed Quality Using a Big-Data Driven Technology Platform
Reimbursable Cooperative Agreement (R)
  Accession Number: 437387

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Selection of GmSWEET39 for oil and protein improvement in soybean - (Peer Reviewed Journal)
Thermal-responsive genetic and epigenetic regulation of DAM cluster controlling dormancy and chilling requirement in peach floral buds - (Peer Reviewed Journal)
Epigenetics regulates reproductive development in plants Reprint Icon ()
Han, Q., Bartels, A., Cheng, X., Meyer, A., An, Y., Hsieh, T., Xiao, W. 2019. Epigenetics regulates reproductive development in plants. Plants. 8(12):564. https://doi.org/10.3390/plants8120564.
Artificial selection on GmOLEO1 contributes to the increase in seed oil during soybean domestication Reprint Icon - (Peer Reviewed Journal)
Zhang, D., Zhang, H., Hu, Z., Chu, S., Yu, K., Lv, L., Yang, Y., Zhang, X., Chen, X., Kan, G., Tang, Y., An, Y., Yu, D. 2019. Artificial selection on GmOLEO1 contributes to the increase in seed oil during soybean domestication. PLoS Genetics. 15(7):e1008267. https://doi.org/10.1371/journal.pgen.1008267.
Genetic architecture of soybean yield and agronomic traits Reprint Icon - (Peer Reviewed Journal)
Diers, B.W., Specht, J., Rainey, K., Cregan, P., Song, Q., Ramasubramanian, V., Graef, G., Nelson, R., Schapaugh, W., Wang, E., Shannon, G., McHale, L., Kantartzi, S., Xavier, A., Mian, R.M., Stupar, R., Michno, J., An, Y., Goettel, W., Ward, R., Fox, C., Lipka, A.E., Hyten, D., Cary, T., Beavis, W.D. 2018. Genetic architecture of soybean yield and agronomic traits. G3, Genes/Genomes/Genetics. 8(10):3367-3375. https://doi.org/10.1534/g3.118.200332.
Dynamic DNA methylation in plant growth and development Reprint Icon ()
Bartels, A., Han, Q., Nair, P., Stacey, L., Gaynier, H., Mosley, M., Huang, Q., Pearson, J., Hsieh, T., An, Y., Xiao, W. 2018. Dynamic DNA methylation in plant growth and development. International Journal of Molecular Sciences. 19(7):2144. https://doi.org/10.3390/ijms19072144.
Changes of seed weight, fatty acid composition, oil and protein contents from different peanut FAD2 genotypes at different seed developmental and maturation stages Reprint Icon - (Peer Reviewed Journal)
Wang, M.L., Chen, C.Y., Tonnis, B.D., Pinnow, D.L., Davis, J., An, Y., Dang, P.M. 2018. Changes of seed weight, fatty acid composition, oil and protein contents from different peanut FAD2 genotypes at different seed developmental and maturation stages. Journal of Agricultural and Food Chemistry. 66(14):3658-3665. DOI: 10.1021/acs.jafc.8b01238.
Integrating GWAS and gene expression data for functional characterization of resistance to white mould in soya bean Reprint Icon - (Peer Reviewed Journal)
Wen, Z., Tan, R., Zhang, S., Collins, P.J., Yuan, J., Du, W., Gu, C., Ou, S., Song, Q., An, Y., Boyse, J.F., Chilvers, M.I., Wang, D. 2018. Integrating GWAS and gene expression data for functional characterization of resistance to white mould in soya bean. Plant Biotechnology. https://doi.org/10.1111/pbi.12918.
Dynamic changes of genome-wide DNA methylation during soybean seed development Reprint Icon - (Peer Reviewed Journal)
An, Y., Goettel, H.W., Han, Q., Bartels, A., Liu, Z., Xiao, W. 2017. Dynamic changes of genome-wide DNA methylation during soybean seed development. Scientific Reports. 7:12263. https://doi.org/10.1038/s41598-017-12510-4.
Fine mapping of the soybean aphid-resistance genes Rag6 and Rag3c from Glycine soja 85-32 Reprint Icon - (Peer Reviewed Journal)
Zhang, S., Zhang, Z., Wen, Z., Gu, C., An, Y., Bales, C., DiFonzo, C., Song, Q., Wang, D. 2017. Fine mapping of the soybean aphid-resistance genes Rag6 and Rag3c from Glycine soja 85-32. Theoretical and Applied Genetics. 130(12):2601-2615. https://doi.org/10.1007/s00122-017-2979-0.
Genetic characterization of the soybean Nested Association Mapping (NAM) population - (Peer Reviewed Journal)
Song, Q., Yan, L., Quigley, C.V., Jordan, B.D., Fickus, E.W., Schroeder, S.G., Song, B., An, Y., Hyten, D., Nelson, R.L., Rainey, K., Beavis, W.D., Specht, J., Diers, B., Cregan, P. 2017. Genetic characterization of the soybean Nested Association Mapping (NAM) population. The Plant Genome. 10(2). doi: 10.3835/plantgenome2016.10.0109.
Validation of the quantitative trait locus underlying soybean plant height using residual heterozygous lines and near isogenic lines across multi-environments - (Peer Reviewed Journal)
Yan, L., Zhang, Y., Song, Q., Cregan, P., Yang, C., An, Y., Wu, C., Chen, Q., Liu, B., Di, R., Zhang, M. 2017. Validation of the quantitative trait locus underlying soybean plant height using residual heterozygous lines and near isogenic lines across multi-environments. Euphytica. 213:32. doi:10.1007/s10681-016-1833.
Genetic separation of southern and northern soybean breeding programs in North America and their associated allelic variation at four maturity loci Reprint Icon - (Peer Reviewed Journal)
Goettel, H.W., An, Y. 2017. Genetic separation of southern and northern soybean breeding programs in North America and their associated allelic variation at four maturity loci. Molecular Breeding. 37(1):8. doi:10.1007/s11032-016-0611-7.
Identification and comparative analysis of differential gene expression in soybean leaf tissue under drought and flooding stress revealed by RNA-Seq Reprint Icon - (Peer Reviewed Journal)
Chen, W., Yao, Q., Patil, G., Agarwal, G., Deshmukh, R.K., Lin, L., Wang, B., Wang, Y., Prince, S.J., Song, L., Xu, D., An, Y., Valliyodan, B., Varshney, R.K., Nguyen, H.T. 2016. Identification and comparative analysis of differential gene expression in soybean leaf tissue under drought and flooding stress revealed by RNA-Seq. Frontiers in Plant Science. 7:1044. doi:10.3389/fpls.2016.01044.
Identification and characterization of large DNA deletions affecting oil quality traits in soybean seeds through transcriptome sequencing analysis Reprint Icon - (Peer Reviewed Journal)
Goettel, H.W., Ramirez, M.E., Upchurch, R.G., An, Y. 2016. Identification and characterization of large DNA deletions affecting oil quality traits in soybean seeds through transcriptome sequencing analysis. Theoretical and Applied Genetics. 129(8):1577-1593. doi:10.1007/s00122-016-2725-z.
Characterization of newly identified natural high-oleate mutant from the USDA cultivated peanut germplasm collection - (Abstract Only)
Wang, M.L., Tonnis, B.D., An, Y., Pinnow, D.L., Chen, C.Y., Pederson, G.A. 2016. Characterization of newly identified natural high-oleate mutant from the USDA cultivated peanut germplasm collection.[Abstract] Plant and Animal Genome Conference. Paper No. P1033.
Newly identified natural high-oleate mutant from Arachis hypogaea L. subsp. Hypogaea - (Peer Reviewed Journal)
Wang, M.L., Tonnis, B.D., An, Y., Pinnow, D.L., Tishchenko, V., Pederson, G.A. 2015. Newly identified natural high-oleate mutant from Arachis hypogaea L. subsp. Hypogaea. Molecular Breeding. 35:186. doi: 10.1007/s11032-015-0377-3.
Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content Reprint Icon - (Peer Reviewed Journal)
Goettel, H.W., Xia, E., Upchurch, R.G., Wang, M.L., Chen, P., An, Y. 2014. Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content. Biomed Central (BMC) Genomics. 15:299.
Differential expression of proteins in response to molybdenum deficiency in winter wheat leaves under low-temperature stress Reprint Icon - (Peer Reviewed Journal)
Sun, X., Tan, Q., Nie, Z., Hu, C., An, Y. 2014. Differential expression of proteins in response to molybdenum deficiency in winter wheat leaves under low-temperature stress. Plant Molecular Biology Reporter. 32(2):1057-1069.
Conserved transcriptional regulatory programs underlying rice and barley germination Reprint Icon - (Peer Reviewed Journal)
Lin, L., Tian, S., Kaeppler, S., Liu, Z., An, Y. 2014. Conserved transcriptional regulatory programs underlying rice and barley germination. PLoS One. 9(2):e87261.doi:10.1371/journal.pone.0087261.
Identification of transcript polymorphisms for seed quality improvement by exploring soybean genetic diversity Reprint Icon - (Abstract Only)
An, Y., Goettel, H.W., Upchurch, R.G., Wang, M.L., Xia, E., Liu, Z., Chen, P. 2014. Identification of transcript polymorphisms for seed quality improvement by exploring soybean genetic diversity (abstract). Plant & Animal Genome. Paper No. 036.
Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons Reprint Icon - (Peer Reviewed Journal)
Goettel, H.W., Liu, Z., Xia, J., Zhang, W., Zhao, P.X., An, Y. 2014. Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons. PLoS One. doi: 10.1371/journal.pone.0086153.
Two tobacco AP1-like gene promoters with highly specific, tightly regulated and uniquely expressed activity during floral transition, initiation and development - (Peer Reviewed Journal)
Zhang, J., Yan, G., Wen, Z., An, Y., Singer, S., Liu, Z. 2013. Two tobacco AP1-like gene promoters with highly specific, tightly regulated and uniquely expressed activity during floral transition, initiation and development. Planta. 239:469-478.
Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs - (Peer Reviewed Journal)
Zhu, H., Xia, R., Zhao, B., An, Y., Dardick, C.D., Callahan, A.M., Liu, Z. 2012. Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs. Biomed Central (BMC) Plant Biology. DOI: 10.1186/1471-2229-12-149.
Apple miRNAs and tasiRNAs with novel regulatory networks Reprint Icon - (Peer Reviewed Journal)
Xia, R., Zhu, H., An, Y., Beers, E., Liu, Z. 2012. Apple miRNAs and tasiRNAs with novel regulatory networks. Genome Biology. 13(6):R47.
Identification of genes/loci and functional markers for seed oil quality improvement by exploring soybean genetic diversity - (Abstract Only)
Chen, P., Upchurch, R.G., An, Y. 2012. Identification of genes/loci and functional markers for seed oil quality improvement by exploring soybean genetic diversity [abstract]. Cellular and Molecular Biology of Soybean Biennial Conference. Available: http://www.osc.iastate.edu/mnet/soybean/level7.html.
Transcriptional regulatory programs underlying barley germination and regulatory functions of Gibberellin and abscisic acid - (Peer Reviewed Journal)
An, Y., Lin, L. 2011. Transcriptional regulatory programs underlying barley germination and regulatory functions of Gibberellin and abscisic acid. Biomed Central (BMC) Plant Biology. 11:105.
Whole genome co-expression analysis of soybean cytochrome P450 genes identifies nodulation-specific P450 monooxygenases - (Peer Reviewed Journal)
Guttikonda, S.K., Joshi, T., Bisht, N., Chen, H., An, Y., Pandey, S., Xu, D., Yu, O. 2010. Whole genome co-expression analysis of soybean cytochrome P450 genes identifies nodulation-specific P450 monooxygenases. Biomed Central (BMC) Plant Biology. 10:243.
Gene Expression Browser: Large-Scale and Cross-Experiment Microarray Data Management, Search & Visualization - (Peer Reviewed Journal)
Zhang, M., Zhang, Y., Liu, L., Yu, L., Tsang, S., Tan, J., Yao, W., Kang, M., An, Y., Fan, X. Gene Expression Browser: Large-Scale and Cross-Experiment Microarray Data Management, Search & Visualization. BMC Bioinformatics.11(433)1471-2105.
Systems Characterization of Gene Reuglatory Networks Underlying Seed Maturation for Soybean Oil Improvement. - (Abstract Only)
Loss-of-function of DELLA protein SLN1 activates GA signaling in barley aleurone - (Peer Reviewed Journal)
The Strong Expression and Conserved Regulation of ACT2 in Arabidopsis and Physcomitrella Patens - (Peer Reviewed Journal)
An, Y., Meagher, R.B. 2010. The Strong Expression and Conserved Regulation of ACT2 in Arabidopsis and Physcomitrella Patens. Plant Molecular Biology Reporter. 28:481-490.
Biological Networks Underlying Soybean Seed Oil Composition and Content - (Abstract Only)
An, Y. 2009. Biological Networks Underlying Soybean Seed Oil Composition and Content. Soybean Research World Conference Proceedings. p. 373
TRANSCRIPTIONAL RESPONSE TO GIBBERELLIN AND ABSCISIC ACID IN BARLEY ALEURONE - (Peer Reviewed Journal)
An, Y., Chen, K. 2006. Transcriptional response to gibberellin and abscisic acid in barley aleurone. Journal of Integrative Plant Biology. 48:591-612.
CONSERVED AND DIVERGENT TRANSCRIPTIONAL REGULATION OF SEED GERMINATION, AND THE REGULATORY ROLES OF GIBBERELLIN AND ABSCISIC ACID IN BARLEY GERMINATION - (Abstract Only)
An, Y., Lin, L., Chen, K., Tian, S., Kaeppler, S. Conserved and divergent transcriptional regulation of seed germination, and the regulatory roles of gibberellin and abscisic acid in barley germination. Plant Biology 2005 Meeting. Paper No. 33005.
GENETIC DISSECTION OF GIBBERELLIN SIGNAL TRANSDUCTION PATHWAY IN BARLEY ALEURONE - (Abstract Only)
An, Y., Chen, K., Kaeppler, S. Genetic dissection of gibberellin signal transduction pathway in barley aleurone. XIII International Plant & Animal Genome Conference. p. P770.
CONSERVED AND DIVERGENT TRANSCRIPTIONAL REGULATION OF SEED GERMINATION AND SEEDLING GROWTH IN BARLEY AND ARABIDOPSIS - (Abstract Only)
An, Y., Lin, L., Tian, S., Kaeppler, S. Conserved and divergent transcriptional regulation of seed germination and seedling growth in barley and arabidopsis. XIII International Plant & Animal Genome Conference. p. P663.
GLOBAL GENE EXPRESSION IN SEED GERMINATION AND SEEDLING GROWTH - (Abstract Only)
An, Y. 2004. Global gene expression in seed germination and seedling growth. Czech Journal of Genetics and Plant Breeding, Book of abstracts, 9th International Barley Genetics Symposium. p. 61.