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ARS Home » Midwest Area » St. Paul, Minnesota » Plant Science Research » Research » Publications at this Location » Publication #283084

Title: A novel red clover virus associated with root colonization by Olpidium sp.

item Samac, Deborah - Debby
item LOCKHART, BEN - University Of Minnesota
item Riday, Heathcliffe

Submitted to: North American Alfalfa Improvement Conference
Publication Type: Abstract Only
Publication Acceptance Date: 6/27/2012
Publication Date: 7/10/2012
Citation: Samac, D.A., Lockhart, B., Riday, H. 2012. A novel red clover virus associated with root colonization by Olpidium sp. [abstract]. 2012 Joint North American Alfalfa Improvement Conference, Trifolium, & Grass Breeders Conference, July 10-12, 2012, Ithaca, New York. Available:

Interpretive Summary:

Technical Abstract: Diseased red clover (Trifolium pratense) was observed in 2-year-old plants in a variety trial seeded at Prairie du Sac, WI. Similar symptoms were observed in space-plant nurseries at multiple disparate locations (Arlington, WI; Lancaster, WI; Marshfield, WI; Prairie du Sac, WI). Often healthy plants removed from the nurseries to the greenhouse developed disease symptoms. In the field, symptoms have appeared on 1- to 4-year-old plants, usually in late summer. Initial symptoms included yellowing of leaves (or sometimes reddening of leaves). Once discoloration began, younger leaves showed some stunting, malformation, and chlorosis. Symptoms were most severe in regrowth after forage harvests with complete plant death usually occurring within one to two forage harvests after symptom onset. This disease appears to be the primary agent of plant death in the U.S. Dairy Forage Research Center red clover breeding program. Diseased plants were assayed for viral, fungal, and bacterial pathogens to identify the cause of the disease symptoms. Two types of virus-like particles were observed by transmission electron microscopy in partially-purified extracts from symptomatic leaves. The first were 30 nm spherical particles resembling those of cryptic viruses. The second were rod-shaped particles 18 nm in diameter with a prominent central canal. These particles were of varying length and had a strong tendency to aggregate end-to-end. In appearance they resembled virions of varicosaviruses. There was no evidence for the presence of phytoplasmas using a PCR-based assay. Roots of diseased plants were infected with a chytrid fungus, Olpidium sp., and Thielaviopsis basicola, a fungus with a broad host range causing root rot. Olpidium is known to be a vector for varicosaviruses. It is unclear whether Olpidium infection causes significant direct damage to roots but may predispose roots to infection by other pathogens and pests. Attempts to mechanically transmit the virus have not been successful to date. Cloning and characterization of the rod-shaped virus is in progress.