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ARS Home » Midwest Area » St. Paul, Minnesota » Plant Science Research » Research » Publications at this Location » Publication #166210


item Samac, Deborah - Debby

Submitted to: North American Alfalfa Improvement Conference
Publication Type: Abstract Only
Publication Acceptance Date: 7/25/2004
Publication Date: 7/25/2004
Citation: Gebeyaw, M.T., Samac, D.A., VandenBosch, K.A., Vance, C.P. 2004. Gene transcription profiling of Medicago truncatula due to changing nutrient nitrogen supply [abstract]. 19th North American Alfalfa Improvement Conference, July 19-21, 2004, Ste. Foy, Quebec, Canada. Available:

Interpretive Summary:

Technical Abstract: Barrel medic (Medicago truncatula) is an annual, self fertile, diploid, herbaceous legume cultivated as cover and pasture crop in many parts of the world. Because of the close relationship of Medicago truncatula (Mt) with the cultivated tetraploid alfalfa (Medicago sativa) and its importance as a feed and cover crop, Mt is being used as a model plant for legume biology and has been the subject of structural and functional genomics work. The international effort in Mt genomics has positioned Mt as resource plant for understanding agronomic traits of importance to forage and grain legumes. The mineral nutrient needed in greatest abundance by plants is nitrogen (N) and most plants can utilize nutrient N as nitrate and ammonium forms. But an important aspect of legumes including Mt is their unique ability to obtain N via microbial symbiosis with soil bacteria called rhizobia. One such rhizobia is Sinorhzobium meliloti strain 1021F that induces nitrogen-fixing nodules (Nod+Fix+) on both Mt and M. sativa. This extremely host-specific bacterial symbiosis allows the host plant to acquire biologically fixed nitrogen (BNF) from the atmosphere. The Mt expressed sequence tag (EST) collection at The Institute of Genomic Research contains some 190,000 EST sequences derived from more than 40 cDNA libraries representing different plant organs and tissues exposed to several treatments and conditions. Individual overlapping ESTs have been clustered into tentative consensus sequences (TCs) that represent putative genes. There are some 17,610 TCs in the release 7.0 of the MtGI, of which 8 cDNA libraries comprising 32,135 ESTs were prepared from mRNA extracted from S. meliloti-inoculated roots and nodules at different developmental stages. Besides, there are 13,513 ESTs prepared from roots of nitrate-starved plants, seedlings that received 5 mM nitrate or uninoculated plants. An in silico (electronic northern) analysis was applied to identify those TCs composed of ESTs derived exclusively from symbiotic roots, root nodules, or nitrate starved and/or nitrate limited roots. We identified more than 600 TCs containing 2,900 ESTs exclusively from S. meliloti inoculated root and nodule libraries. A further 297 TCs containing 740 ESTs were also found to be specific to nitrate starvation and/or nitrate limitation. About 70% of the symbiotic root- and nodule-specific TCs appear to be novel or showed similarity to proteins of unknown function. The transcription profiles of many of the novel TCs were evaluated in a macroarray analysis to determine if those genes were also expressed in nodules that are not fixing nitrogen (Nod+Fix-), or in plants that received nitrate and ammonium as fertilizers. Results from the macroarray analysis will be presented. Results obtained from applying genomics tools to identify genes associated with BNF and mineral N nutrition in Mt should be transferable to other herbaceous legume species.