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ARS Home » Pacific West Area » Davis, California » Crops Pathology and Genetics Research » Research » Research Project #441857
Research Project: Improved Pest and Disease Control for Enhanced Woody Perennial Tree Crop and Grapevine Production

Location: Crops Pathology and Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

First report of tomato ringspot virus infection of Krymsk 86 (Prunus cerasifera x P. persica), a hybrid rootstock, in California Reprint Icon - (Peer Reviewed Journal)
Reddy, K., Ott, N.J., Chavira, S., Westphal, A., Sudarshana, M.R. 2024. First report of tomato ringspot virus infection of Krymsk 86 (Prunus cerasifera x P. persica), a hybrid rootstock, in California. Plant Disease. 108(12):3665. https://doi.org/10.1094/PDIS-09-24-1894-PDN.

Full-length ITS amplicon sequencing resolves Phytophthora species in surface waters used for orchard irrigation in California’s San Joaquin Valley Reprint Icon - (Peer Reviewed Journal)
Ott, N., Nouri, M., Browne, G.T. 2024. Full-length ITS amplicon sequencing resolves Phytophthora species in surface waters used for orchard irrigation in California’s San Joaquin Valley. Plant Disease. https://doi.org/10.1094/PDIS-09-23-1991-RE.

First complete genome sequence resource of a Potyvirus lactucae isolate from the United States of America Reprint Icon - (Peer Reviewed Journal)
Reddy, K., Kunda, D., Gilbertson, R.L., McDonald, K.A., Nandi, S., Sudarshana, M.R. 2024. First complete genome sequence resource of a Potyvirus lactucae isolate from the United States of America. PhytoFrontiers. 4(4):828-831. https://doi.org/10.1094/PHYTOFR-04-24-0043-A.

Cellobionate production from sodium hydroxide pretreated wheat straw by engineered Neurospora crassa HL10 Reprint Icon - (Peer Reviewed Journal)
Wang, J., Kasuga, T., Fan, Z. 2024. Cellobionate production from sodium hydroxide pretreated wheat straw by engineered Neurospora crassa HL10. Bioprocess and Biosystems Engineering. Volume 47, pages 1683–1690, (2024). https://doi.org/10.1007/s00449-024-03061-w.

Assembly and analysis of the genome of Notholithocarpus densiflorus Reprint Icon - (Peer Reviewed Journal)
Cai, Y., Anderson, E., Xue, W., Wong, S., Cui, L., Cheng, X., Wang, O., Mao, Q., Liu, S.J., Davis, J.T., Magalang, P.R., Schmidt, D., Kasuga, T., Garbelotto, M., Drmanac, R., Kua, C., Cannon, C., Maloof, J.N., Peters, B.A. 2024. Assembly and analysis of the genome of Notholithocarpus densiflorus. G3, Genes/Genomes/Genetics. 14(5). Article jkae043. https://doi.org/10.1093/g3journal/jkae043.

Identifying walnut rootstocks with resistance to multiple soil-borne plant pathogens Reprint Icon - (Peer Reviewed Journal)
Westphal, A., Maung, Z., Buzo, T., Brown, P., Leslie, C., Browne, G.T., Ott, N., McClean, A.E., Kluepfel, D.A. 2024. Identifying walnut rootstocks with resistance to multiple soil-borne plant pathogens. European Journal of Horticultural Science. 89(2):1-10. https://doi.org/10.17660/eJHS.2024/008.

Transcriptomic evidence of a link between cell wall biogenesis, pathogenesis, and vigor in walnut root and trunk diseases Reprint Icon - (Peer Reviewed Journal)
Saxe, H., Walawage, S., Balan, B., Leslie, C., Brown, P.J., Browne, G.T., Kluepfel, D.A., Westphal, A., Dandekar, A.M. 2024. Transcriptomic evidence of a link between cell wall biogenesis, pathogenesis, and vigor in walnut root and trunk diseases. International Journal of Molecular Sciences. 25(2). Article 931. https://doi.org/10.3390/ijms25020931.

A super-pangenome of the North American wild grape species Reprint Icon - (Peer Reviewed Journal)
Cochetel, N., Minio, A., Guaraccino, A., Garcia, J., Figueroa-Balderas, R., Massonnet, M., Kasuga, T., Londo, J., Garrison, E., Gaut, B., Cantu, D. 2023. A super-pangenome of the North American wild grape species. Genome Biology. 24. Article 290. https://doi.org/10.1186/s13059-023-03133-2.

Lineage-specific genes are clustered with HET-domain genes and respond to environmental and genetic manipulations regulating reproduction in Neurospora Reprint Icon - (Peer Reviewed Journal)
Wang, Z., Wang, Y., Kasuga, T., Lopez-Giraldez, F., Zhang, Y., Zhang, Z., Wang, Y., Dong, C., Sil, A., Trail, F., Yarden, O., Townsend, J. 2023. Lineage-specific genes are clustered with HET-domain genes and respond to environmental and genetic manipulations regulating reproduction in Neurospora. PLoS Genetics. 19(11). Article e1011019. https://doi.org/10.1371/journal.pgen.1011019.

Phosphorus fertilization can improve young almond tree growth in multiple replant settings Reprint Icon - (Peer Reviewed Journal)
Gordon, P.E., Ott, N.J., Brar, R.K., Holtz, B.A., Browne, G.T. 2024. Phosphorus fertilization can improve young almond tree growth in multiple replant settings. HortTechnology. 34(2):161-171. https://doi.org/10.21273/HORTTECH05143-22.

Origins of lineage-specific elements via gene duplication, relocation, and regional rearrangement in Neurospora crassa Reprint Icon - (Peer Reviewed Journal)
Wang, Z., Wang, Y., Kasuga, T., Hassler, H., Lopez-Giraldez, F., Dong, C., Yarden, O., Townsend, J. 2023. Origins of lineage-specific elements via gene duplication, relocation, and regional rearrangement in Neurospora crassa. Molecular Ecology. https://doi.org/10.1111/mec.17168.

Conversion of deproteinized cheese whey to lactobionate by an engineered Neurospora crassa strain F5 Reprint Icon - (Peer Reviewed Journal)
Poltorak, A., Zhou, X., Kasuga, T., Xu, Y., Zhiliang, F. 2023. Conversion of deproteinized cheese whey to lactobionate by an engineered Neurospora crassa strain F5. Applied Biochemistry and Biotechnology. https://doi.org/10.1007/s12010-023-04583-x.

Conversion of deproteinized cheese whey to lactobionic acid by an engineered Neurospora crassa - (Peer Reviewed Journal)