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ARS Home » Pacific West Area » Albany, California » Plant Gene Expression Center » People & Locations » Devin Coleman-Derr
Devin Coleman-Derr
Plant Gene Expression Center
Research Molecular Biologist

Phone: (510) 559-5911
Fax: (510) 559-5678
Room 1026

USDA, ARS, PWA, PGEC
800 BUCHANAN STREET
ALBANY , CA 94710
Projects
Discovery of Plant Genetic Mechanisms Controlling Microbial Recruitment to the Root Microbiome
In-House Appropriated (D)
  Accession Number: 434454
Exploring the Role of Drought-induced Plant-associated Microbes in Promoting Plant Fitness in Sorghum Bicolor and Oryza sativa
Non-Funded Cooperative Agreement (N)
  Accession Number: 431931

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Exploring the root microbiome: extracting bacterial community data for the soil, rhizosphere, and root endosphere -
Simmons, T., Caddell, D., Deng, S., Coleman-Derr, D.A. 2018. Exploring the root microbiome: extracting bacterial community data for the soil, rhizosphere, and root endosphere. Journal of Visualized Experiments. 135:1-10.
Drought stress and root-associated bacterial communities -
Naylor, D., Coleman-Derr, D.A. 2018. Drought stress and root-associated bacterial communities. Frontiers in Plant Science. 8:1-16.
Insights into soybean transcriptome reconfiguration under hypoxic stress: Functionl, regulatory, structural, and compositional characterization -
Nakayama, T.J., Rodrigues, F.A., Neumaier, N., Marcolina-Gomes, J., Molinari, H.B., Santiago, T.R., Formighieri, E.F., Basso, M.F., Farias, J.R., Emygdio, B.M., De Oliveira, A.C., Campos, A.D., Borem, A., Coleman-Derr, D.A., Mertz-Henning, L.M., Nepomuceno, A. 2017. Insights into soybean transciptome reconfiguration under hypoxic stress: Functionl, regulatory, structral, and compisitional characterization. PLoS One. 12(11):e0187920. doi:10.1371/journal.pone.0187920.ecollection2017.
Drought and host selection influence microbial community dynamics in the grass root microbiome -
Naylor, D., Degraaf, S., Purdom, E., Coleman-Derr, D.A. 2017. Drought and host selection influence microbial community dynamics in the grass root microbiome. The ISME Journal: Multidisciplinary Journal of Microbial Ecology. doi:10.1093/nar/gkw935.
Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria -
Xu, L., Naylor, D., Dong, Z., Simmons, T., Pierroz, G., Hixson, K., Young, M., Zink, E.M., Engbrecht, K., Wang, Y., Gao, C., Degraff, S., Madera, M., Sievert, J.A., Hollingsworth, J., Birdseye, D., Scheller, H., Hutmacher, R., Dahlberg, J., Jansson, C., Taylor, J., Lemaux, P., Coleman-Derr, D.A. 2018. Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria. Proceedings of the National Academy of Sciences. 115(18):E4284-E4293.
PIECE 2.0: an update for the plant gene structure comparison and evolution database -
Wang, Y., Xu, L., Thilmony, R.L., You, F., Gu, Y.Q., Coleman-Derr, D.A. 2016. PIECE 2.0: an update for the plant gene structure comparison and evolution database. Nucleic Acids Research. 45(D1):1015-1020. https://doi.org/10.1093/nar/gkw935.
Piece2.0: an update for the pant gene structure comparison and evolution database -
Wang, Y., Ling, X., Thilmony, R., You, F., Gu, Y., Coleman-Derr, D.A. 2016. Piece2.0: an update for the pant gene structure comparison and evolution database. Nucleic Acids Research. 45:1015-1020.
Drought-induced shifts in the root microbiome -
Naylor, D., Deng, S., Xu, L., Coleman-Derr, D.A. 2016. Drought-induced shifts in the root microbiome. Meeting Abstract. Plant Microbial Interactions Symposium, Joint Genome Institute
GSP: A web-based platform for designing genome-specific primers in polyploids -
Wang, Y., Tiwari, T., Coleman-Derr, D.A., Rawda, N., Gill, B., Huo, N., You, F., Gu, Y.Q. 2016. GSP: A web-based platform for designing genome-specific primers in polyploids. Bioinformatics. doi: 10.1093/bioinformatics/btw/34.
MetaCoMET: a web platform for discovery and visualization of the core microbiome -
Wang, Y., Xu, L., Gu, Y.Q., Coleman-Derr, D.A. 2016. MetaCoMET: a web platform for discovery and visualization of the core microbiome. Bioinformatics. 32(22):3469-3470. doi:10.1093/bioinformatics/btw507.
GSP: a web-based platform for designing genome-specific primers in polyploids -
Wang, Y., Tiwari, V.K., Rawat, N., Gill, B.S., Huo, N., You, F.M., Coleman-Derr, D.A., Gu, Y.Q. 2016. GSP: a web-based platform for designing genome-specific primers in polyploids. Bioinformatics. 32(15):2382-2383.
The Cacti microbiome: interplay between habitat-filtering and host-specificity -
Fonseca-Garcia, C., Coleman-Derr, D.A., Garrido, E., Visel, A., Tringe, S., Partida-Martinez, L. 2016. The Cacti microbiome: interplay between habitat-filtering and host-specificity. Frontiers in Microbiology. 7:1-16.
High-resolution phylogenic microbial community profiling -
Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species. -
OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species -
Wang, Y., Coleman-Derr, D.A., Chen, G., Gu, Y.Q. 2015. OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species. Nucleic Acids Research. 43(W1):W78-W84. doi: 10.1093/nar/gkv487.
Inferring geographic origin of barley accessions using molecular markers -
Bonman, J.M., Gu, Y.Q., Coleman Derr, D., Jackson, E.W., Bockelman, H.E. 2010. Inferring geographic origin of barley accessions using molecular markers. Genetic Resources and Crop Evolution. DOI: 10.1007/s10722-010-9574-4.
Origin of barley accessions with multiple disease resistance determined by SSR analysis. -
Bonman, J.M., Gu, Y., Coleman Derr, D., Jackson, E.W., Chao, S., Bockelman, H.E. 2008. Origin of barley accessions with multiple disease resistance determined by SSR analysis.. International Congress of Plant Pathology Abstracts and Proceedings.
HYBSWEEPER: A RESOURCE FOR DETECTING HIGH-DENSITY PLATE COORDINATES -
Lazo, G.R., Lui, N., Gu, Y.Q., Kong, X., Coleman Derr, D., Anderson, O.D. 2005. Hybsweeper: a resource for detecting high-density plate coordinates. Biotechniques. 39:320-324.
GENOMIC ORGANIZATION OF THE COMPLEX A-GLIADIN GENE LOCI IN WHEAT -
Gu, Y.Q., Crossman, C.C., Kong, X., Luo, M., You, F.M., Coleman Derr, D., Dubcovsky, J., Anderson, O.D. 2004. Genomic organization of the complex a-gliadin gene loci in wheat. Theoretical and Applied Genetics. 109:648-657.
Rapid genome evolution as revealed by comparative sequence analysis of orthologous regions from four triticeae genomes -
Gu, Y.Q., Coleman-Derr, D., Kong, X., Anderson, O.D. 2004. Dynamics and rapid genome evolution in allopolyploid wheat as revealed by comparative sequence analysis of the complex hmw-glutenin locus regions. Plant Physiology. 135:459-470.
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