Location: Crop Improvement and Genetics ResearchTitle: Draft genome sequence of Agrobacterium fabrum strain 1D1104
|ALABED, DIAA - Former ARS Employee|
|Thomson, James - Jim|
Submitted to: Microbiology Resource Announcements
Publication Type: Peer Reviewed Journal
Publication Acceptance Date: 11/5/2021
Publication Date: 12/2/2021
Citation: Huo, N., Gu, Y.Q., McCue, K.F., Alabed, D., Thomson, J.G. 2021. Draft genome sequence of Agrobacterium fabrum strain 1D1104. Microbiology Resource Announcements. 10(48). Article e00996-21. https://doi.org/10.1128/MRA.00996-21.
Interpretive Summary: This work reports the draft genome of Agrobacterium tumefaciens str. The assembled genome is composed of a 2,774,783 bp circular chromosome, 2,110,112 bp linear chromosome, 133,577 bp AT plasmid, and four unincorporated DNA fragments were observed and determined to be 53,895 bp, 42,391 bp, 41,768 bp and 35,476 bp. The wild non-disarmed strain 1D1104 does not appear competent to form gall on citrus tissue, which is consistent with the absence of a Ti virulence plasmid from the genome.
Technical Abstract: This work reports the draft genome sequence of Agrobacterium fabrum strain 1D1104. The assembled genome is composed of a 2,774,783-bp circular chromosome, a 2,110,112-bp linear chromosome, an AT plasmid of 133,577 bp, and four unassembled contigs of 5,389,544 bp, 42,391 bp, 41,768 bp, and 35,476 bp.