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ARS Home » Southeast Area » Stoneville, Mississippi » Genomics and Bioinformatics Research » Research » Research Project #444279
Research Project: Integrative Applied Agricultural Genomics and Bioinformatics Research

Location: Genomics and Bioinformatics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Genomic diversity and evolution of the Hawaiian Islands endemic Kokia (Malvaceae) Reprint Icon - (Peer Reviewed Journal)
Kayal, E., Arick Ii, M.A., Hsu, C., Thrash, A., Yorkston, M., Morden, C.W., Wendel, J.F., Peterson, D.G., Grover, C.E. 2024. Genomic diversity and evolution of the Hawaiian Islands endemic Kokia (Malvaceae). G3: Genes, genomics, genetics. https://doi.org/10.1093/g3journal/jkae180.

Little evidence for homoeologous gene conversion and homoeologous exchange events in Gossypium allopolyploids Reprint Icon - (Peer Reviewed Journal)
Conover, J.L., Grover, C.E., Sharbrough, J., Sloan, D.B., Peterson, D.G., Wendel, J.F. 2024. Little evidence for homoeologous gene conversion and homoeologous exchange events in Gossypium allopolyploids. American Journal of Botany. https://doi.org/10.1002/ajb2.16386.

agile genetics: single gene resolution without the fuss Reprint Icon - (Peer Reviewed Journal)
Vaughn, J.N., Korani, W., Clevenger, J., Ozias-Akins, P. 2024. agile genetics: single gene resolution without the fuss. Bioessays. https://doi.org/10.1002/bies.202300206.

A blueberry (Vaccinium spp.) crop ontology to enable standardized phenotyping for blueberry breeding and research Reprint Icon - (Peer Reviewed Journal)
Hilsop, L.M., Luby, C.H., Loarca, J., Humann, J., Hummer, K.E., Bassil, N.V., Zhao, D., Sheehan, M., Casa, A.M., Billings, G.T., Echeverria, D., Ashrafi, H., Babiker, E.M., Edger, P., Ehlenfeldt, M.K., Hancock, J., Finn, C.E., Iorizzo, M., Mackey, T.A., Munoz, P.R., Olmstead, J., Rowland, L.J., Sandefur, P., Spencer, J., Stringer, S.J., Vorsa, N., Wagner, A., Hulse-Kemp, A.M. 2024. A blueberry (Vaccinium spp.) crop ontology to enable standardized phenotyping for blueberry breeding and research. Journal of the American Pomological Society. 59:1433-1442. https://doi.org/10.21273/HORTSCI17676-23.

MicroMPN: methods and software for high-throughput screening of microbe suppression in mixed populations Reprint Icon - (Peer Reviewed Journal)
Franco Melendez, K.P., Schuster, L., Donahey, M.C., Kairalla, E., Jansen, M.A., Reisch, C., Rivers, A.R. 2024. MicroMPN: methods and software for high-throughput screening of microbe suppression in mixed populations. Microbiology Spectrum. https://doi.org/10.1128/spectrum.03578-23.

Transcriptome analysis of the 2,4-dichlorophenoxyacetic acid (2,4-D)-tolerant cotton chromosome substitution line CS-B15sh and its susceptible parental lines G. hirsutum L. cv. Texas Marker-1 and G. barbadense L. cv. Pima 379 Reprint Icon - (Peer Reviewed Journal)
Perez, L.M., Mauleon, R., Arick Ii, M.A., Magbanua, Z.V., Peterson, D.G., Dean, J.F., Tseng, T. 2022. Transcriptome analysis of the 2,4-dichlorophenoxyacetic acid (2,4-D)-tolerant cotton chromosome substitution line CS-B15sh and its susceptible parental lines G. hirsutum L. cv. Texas Marker-1 and G. barbadense L. cv. Pima 379. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2022.910369.

Organellar transcripts dominate the cellular mRNA pool across plants of varying ploidy levels Reprint Icon - (Peer Reviewed Journal)
Forsythe, E.S., Grover, C.E., Miller, E.R., Conover, J.L., Arick Ii, M.A., Chavarro, M.F., Leal-Bertioli, S.C., Peterson, D.G., Sharbrough, J., Wendel, J.F., Sloan, D.B. 2022. Organellar transcripts dominate the cellular mRNA pool across plants of varying ploidy levels. Proceedings of the National Academy of Sciences (PNAS). https://doi.org/10.1073/pnas.2204187119.