Publications
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Characterization of two novel Salmonella phages having biocontrol potential against Salmonella spp. in gastrointestinal conditions
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Zhang, Y., Chu, M., Liao, Y., Salvador, A., Wu, V.C. 2024. Characterization of two novel Salmonella phages having biocontrol potential against Salmonella spp. in gastrointestinal conditions. Scientific Reports. 14. Article 12294. https://doi.org/10.1038/s41598-024-59502-9.
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Transcriptional analysis of Escherichia coli O157:H7 and a non-pathogenic E. coli in response to the chlorine treatment regulated by the U.S. Environmental Protection Agency
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A new member of Tequintavirus bacteriophage isolated from sewage water with antimicrobial potential against multidrug-resistant Salmonella Infantis strains
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DeepPL: a deep-learning-based tool for the prediction of bacteriophage lifecycle
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A new Rogue-like Escherichia phage UDF157lw to control Escherichia coli O157:H7
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Liao, Y., Ho, K., Zhang, Y., Salvador, A., Wu, V.C. 2024. A new Rogue-like Escherichia phage UDF157lw to control Escherichia coli O157:H7. Frontiers in Microbiology. 14. Article 1302032. https://doi.org/10.3389/fmicb.2023.1302032.
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Gut phageome- an insight into the role and impact of the gut microbiome and their correlation with mammal health and diseases
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Zhang, Y.N., Sharma, S., Tom, L., Liao, Y., Wu, V.C. 2023. Gut phageome- an insight into the role and impact of the gut microbiome and their correlation with mammal health and diseases. Microorganisms. 11(10). Article 2454. https://doi.org/10.3390/microorganisms11102454.
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Metagenomic investigation reveals bacteriophage-mediated horizontal transfer of antibiotic resistance genes in microbial communities of an organic agricultural ecosystem
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Zhang, Y., Kitazumi, A., Liao, Y., De Los Reyes, B.G., Wu, V.C. 2023. Metagenomic investigation reveals bacteriophage-mediated horizontal transfer of antibiotic resistance genes in microbial communities of an organic agricultural ecosystem. Microbiology Spectrum. Article e00226-23. https://doi.org/10.1128/spectrum.00226-23.
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Antimicrobial potential of a new Rogue-like Escherichia coli phage UDF157lw against E. coli O157:H7 biofilm
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Comparative metagenomics reveal the effect of diet on the fecal virome and the associations with production traits of beef cattle
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Characterization and encapsulation of a Salmonella phage cocktail for the biocontrol potential of Salmonella spp. in gastrointestinal environments
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Microbiome profiles of an organic agricultural environment microcosm: A window to bacteriophage-bacterial population dynamics and the evolution of antibiotic resistance in the agricultural environment microbiome
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The role of temperate phages in bacterial pathogenicity
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Gummalla, V., Zhang, Y., Liao, Y., Wu, V.C. 2023. The role of temperate phages in bacterial pathogenicity. Microorganisms. 11(3). Article 541. https://doi.org/10.3390/microorganisms11030541.
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A new Kayfunavirus-like Escherichia phage vB_EcoP-Ro45lw with antimicrobial potential of Shiga toxin-producing Escherichia coli O45 strain
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Sun, X., Liao, Y., Zhang, Y., Salvador, A., Ho, K., Wu, V.C. 2022. A new Kayfunavirus-like Escherichia phage vB_EcoP-Ro45lw with antimicrobial potential of Shiga toxin-producing Escherichia coli O45 strain. Microorganisms. 11(1). Article 77. https://doi.org/10.3390/microorganisms11010077.
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Shiga toxin-producing Escherichia coli outbreaks in California’s leafy greens production continuum
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Lacombe, A.C., Quintela, I.A., Liao, Y., Wu, V.C. 2022. Shiga toxin-producing Escherichia coli outbreaks in California’s leafy greens production continuum. Frontiers In Food Science And Technology. 2. Article 1068690. https://doi.org/10.3389/frfst.2022.1068690.
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Characterization of polyvalent Escherichia phage Sa157lw for the biocontrol potential of Salmonella Typhimurium and Escherichia coli O157:H7 on contaminated mung bean seeds
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Liao, Y., Zhang, Y., Salvador, A., Ho, K., Cooley, M.B., Wu, V.C. 2022. Characterization of polyvalent Escherichia phage Sa157lw for the biocontrol potential of Salmonella Typhimurium and Escherichia coli O157:H7 on contaminated mung bean seeds. Frontiers in Microbiology. 13. Article 1053583. https://doi.org/10.3389/fmicb.2022.1053583.
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Whole-genome analysis of Escherichia phage vB_EcoM-S1P5QW, isolated from manures collected from cattle farms in Maine
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Quintela, I.A., Hwang, A., Vasse, T., Salvador, A., Zhang, Y., Liao, Y., Wu, V.C. 2022. Whole-genome analysis of Escherichia phage vB_EcoM-S1P5QW, isolated from manures collected from cattle farms in Maine. Microbiology Resource Announcements. 11(4). Article e00041-22. https://doi.org/10.1128/mra.00041-22.
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Characterization of a T4-like bacteriophage vB_EcoM-Sa45lw as a potential biocontrol agent for Shiga toxin-producing Escherichia coli O45 contaminated on Mung Bean seeds
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Liao, Y., Zhang, Y., Salvador, A., Harden, L.A., Wu, V.C. 2022. Characterization of a T4-like bacteriophage vB_EcoM-Sa45lw as a potential biocontrol agent for Shiga toxin-producing Escherichia coli O45 contaminated on Mung Bean seeds. Microbiology Spectrum. 10(1). Article e02220-21. https://doi.org/10.1128/spectrum.02220-21.
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Characterization of two new Shiga toxin-producing Escherichia coli O103-infecting phages isolated from an organic farm
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Zhang, Y., Liao, Y., Salvador, A., Lavenburg, M.V., Wu, V.C. 2021. Characterization of two new Shiga toxin-producing Escherichia coli O103-infecting phages isolated from an organic farm. Microorganisms. 9(7):1527. https://doi.org/10.3390/microorganisms9071527.
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Genomic characterization of two Shiga toxin-converting bacteriophages induced from environmental Shiga toxin-producing Escherichia coli.
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Zhang, Y., Liao, Y., Salvador, A., Wu, V.C. 2021. Genomic characterization of two Shiga toxin-converting bacteriophages induced from environmental Shiga toxin-producing Escherichia coli. Frontiers in Microbiology. 12. Article 587696. https://doi.org/10.3389/fmicb.2021.587696.
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Food safety lessons learned from the COVID-19 pandemic
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Lacombe, A.C., Quintela, I.A., Liao, Y., Wu, V.C. 2020. Food safety lessons learned from the COVID-19 pandemic. Journal of Food Safety. 41:2. https://doi.org/10.1111/jfs.12878.
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Whole-genome analysis of a Shiga toxin-producing Escherichia coli O103:H2 strain isolated from cattle feces
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Zhang, Y., Liao, Y., Wu, V.C. 2020. Whole-genome analysis of a Shiga toxin-producing Escherichia coli O103:H2 strain isolated from cattle feces. Microbiology Resource Announcements. 9:45. https://doi.org/10.1128/MRA.00896-20.
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The effects of environmental factors on the prevalence and diversity of bacteriophages lytic against top six non-O157 Shiga toxin-producing Escherichia coli on an organic farm
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Liao, Y., Lavenburg, V., Lennon, M., Salvador, A., Hsu, A.L., Wu, V.C.H. 2020. The effects of environmental factors on the prevalence and diversity of bacteriophages lytic against top 6 non-O157 Shiga toxin-producing Escherichia coli on an organic farm. Journal of Food Safety. https://doi.org/10.1111/jfs.12865.
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Use of lytic bacteriophages as an antimicrobial intervention to improve produce safety
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Effects of lyophilization on the stability of bacteriophages against different serogroups of Shiga toxin-producing Escherichia coli
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Lavenburg, V., Liao, Y., Salvador, A., Hsu, A.L., Harden, L.A., Wu, V.C. 2020. Effects of lyophilization on the stability of bacteriophages against different serogroups of Shiga toxin-producing Escherichia coli. Cryobiology. 96:85-91. https://doi.org/10.1016/j.cryobiol.2020.07.012.
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Bacteriophages specific to Shiga toxin-producing Escherichia coli exist in goat feces and associated environments on an organic produce farm in Northern California, USA
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Lennon, M., Liao, Y., Salvador, A., Lauzon, C.R., Wu, V.C. 2020. Bacteriophages specific to Shiga toxin-producing Escherichia coli exist in goat feces and associated environments on an organic produce farm in Northern California, USA. PLoS One. 15(6):0234488. https://doi.org/10.1371/journal.pone.0234438.
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Is Shiga toxin-producing Escherichia coli O45 no longer a food safety threat? The danger is still out there
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Zhang, Y., Liao, Y., Sun, X., Wu, V.C.H. 2020. Is Shiga toxin-producing Escherichia coli O45 no longer a food safety threat? The danger is still out there. Microorganisms. 8(5):782. https://doi.org/10.3390/microorganisms8050782.
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A lytic bacteriophage isolated from non-animal origin has better biocontrol features than a bacteriophage isolated from bovine feces to control Shiga toxin-producing Escherichia coli O157:H7
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Characterization of three lytic bacteriophages as an antimicrobial agent for biocontrol of Shiga toxin-producing Escherichia coli O145
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Is Shiga toxin-producing Escherichia coli O45 no longer a food safety threat? The danger is still out there
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Zhang, Y., Liao, Y., Salvador, A., Sun, X., Wu, V.C. 2020. Is Shiga toxin-producing Escherichia coli O45 no longer a food safety threat? The danger is still out there [abstract]. Meeting Abstract.
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Investigating the whole-genome sequences of a new locus of enterocyte effacement-positive Shiga toxin-producing Escherichia coli O157:H7 strain isolated from river water
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Zhang, Y., Liao, Y., Salvador, A., Sun, X., Wu, V.C. 2020. Investigating the whole-genome sequences of a new locus of enterocyte effacement-positive Shiga toxin-producing Escherichia coli O157:H7 strain isolated from river water. Microbiology Resource Announcements. 9(12):e00112-20. https://doi.org/10.1128/MRA.00112-20.
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Genomic characterization and potential pathogenetic analysis of Shiga toxin-converting bacteriophages induced from Shiga toxin-producing Escherichia coli strains.
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Prediction, diversity, and genomic analysis of temperate phages induced from Shiga toxin-producing Escherichia coli strains
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Zhang, Y., Liao, Y., Salvador, A., Sun, X., Wu, V.C. 2020. Prediction, diversity, and genomic analysis of temperate phages induced from Shiga toxin-producing Escherichia coli strains. Frontiers in Microbiology. 10:e3093. https://doi.org/10.3389/fmicb.2019.03093.
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Phage therapy for controlling Shiga toxin-producing Escherichia coli O103 using lytic bacteriophages
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Complete genome sequence of a Shiga toxin-converting bacteriophage, Escherichia phage Lys12581Vzw, induced from an outbreak Shiga toxin-producing Escherichia coli strain
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Zhang, Y., Liao, Y., Salvador, A., Sun, X., Wu, V.C. 2019. Complete genome sequence of a Shiga toxin-converting bacteriophage, Escherichia phage Lys12581Vzw, induced from an outbreak Shiga toxin-producing Escherichia coli strain. Microbiology Resource Announcements. 8:e00793-19. https://doi.org/10.1128/MRA.00793-19.
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Complete genome sequence of Escherichia coli phage vB_EcoM Sa157lw, isolated from surface water collected in Salinas, California
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Liu, F., Liao, Y., Li, R.W., Wu, V.C. 2019. Complete genome sequence of Escherichia coli phage vB_EcoM Sa157lw, isolated from surface water collected in Salinas, California. Microbiology Resource Announcements. 8:e00718-19. https://doi.org/10.1128/MRA.00718-19.
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Genome sequence of a T4-like phage, Escherichia phage vB_EcoM-Sa45lw, infecting Shiga toxin-producing Escherichia coli strains
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Liao, Y., Zhang, Y., Salvador, A., Wu, V.C. 2019. Genome sequence of a T4-like phage, Escherichia phage vB_EcoM-Sa45lw, infecting Shiga toxin-producing Escherichia coli strains. Microbiology Resource Announcements. 8:e00804-19. https://doi.org/10.1128/MRA.00804-19.
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Characterization of a lytic bacteriophage as an antimicrobial agent for biocontrol of Shiga toxin-producing Escherichia coli O145 strains
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Liao, Y., Salvador, A., Harden, L.A., Liu, F., Lavenburg, V.M., Li, R.W., Wu, V.C. 2019. Characterization of a lytic bacteriophage as an antimicrobial agent for biocontrol of Shiga toxin-producing Escherichia coli O145 strains. Antibiotics. 8(2):74. https://doi.org/10.3390/antibiotics8020074.
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The Prevalence of Bacteriophages Lytic against Shiga Toxin-Producing Escherichia coli (STEC) and its Correlation with STEC Bacterial Hosts in an Organic Farm
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Diverse Shiga toxin-producing Escherichia coli-specific bacteriophages exist in goat feces and the surrounding environments on an organic, produce-growing farm in Northern California, USA
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Discovery of novel shiga toxin-producing Escherichia coli (STEC)- specific bacteriophages from non-fecal composts using genomic characterization
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Liao, Y., Sun, X., Quintela, I.A., Bridges, D.F., Liu, F., Zhang, Y., Salvador, A., Wu, V.C. 2019. Discovery of novel shiga toxin-producing Escherichia coli (STEC)- specific bacteriophages from non-fecal composts using genomic characterization. Frontiers in Microbiology. 10:627. https://doi.org/10.3389/fmicb.2019.00627.
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Genomic Characterization of a T4-Like Bacteriophage Isolated from Surface Water in a Produce-Growing Area in Salinas, California as a Potential Biocontrol Agent for Shiga Toxin-Producing Escherichia coli
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Characterization of a Lytic Bacteriophage as an Antimicrobial Agent for Biocontrol of Shiga Toxin-Producing Escherichia coli O145 Strains
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Complete genome sequence of a lytic T7-like phage, Escherichia phage vB_EcoP-Ro45lw, isolated from non-fecal compost samples
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Liao, Y., Liu, F., Wu, V.C. 2019. Complete genome sequence of a lytic T7-like phage, Escherichia phage vB_EcoP-Ro45lw, isolated from non-fecal compost samples. Microbiology Resource Announcements. 8:e00036-19. https://doi.org/10.1128/MRA.00036-19.
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Effects of lyophilization on the stability of bacteriophages against different serogroups of Shiga toxin-producing Escherichia coli
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Prediction, diversity, and genomic analysis of temperate phages induced from Shiga toxin-producing Escherichia coli
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Complete genome sequence of Escherichia Phage vB_EcoM-Pr121LW isolated from soil in an organic farm
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Liao, Y., Liu, F., Wu, V.C. 2018. Complete genome sequence of Escherichia Phage vB_EcoM-Pr121LW isolated from soil in an organic farm. Microbiology Resource Announcements. 7:e01236-18. https://doi.org/10.1128/MRA.01236-18.
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Complete genome sequence of Escherichia coli Phage vB_EcoS Sa179lw isolated from surface water in a produce-growing area in northern california
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Liao, Y., Liu, F., Sun, X., Li, R.W., Wu, V.C. 2018. Complete genome sequence of Escherichia coli Phage vB_EcoS Sa179lw isolated from surface water in a produce-growing area in northern California. Genome Announcements. 6(27):e00337-18. https://doi.org/10.1128/genomeA.00337-18.
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Isolation of bacteriophages against non-O157 and O157 Shiga toxin-producing Escherichia coli (STEC) from composting of non-fecal materials and the potential impact on produce safety
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Characterization of free lytic bacteriophages isolated from compost against O145 Shiga toxin-producing Escherichia coli (STEC) as a potential biocontrol agent
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Identification of novel bacteriophage peptides using a combination of gene sequence LC-MS-MS analysis and BLASTP
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Investigation of prevalence of free Shiga toxin-producing Escherichia coli (STEC)-specific bacteriophages and the correlation with STEC bacterial hosts in produce-growing area in Salinas, California
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Liao, Y., Quintela, I., Nguyen, K.M., Salvador, A., Cooley, M.B., Wu, V.C. 2018. Investigation of prevalence of free Shiga toxin-producing Escherichia coli (STEC)-specific bacteriophages and the correlation with STEC bacterial hosts in produce-growing area in Salinas, California. PLoS One. 13(1):e0190534. https://doi.org/10.1371/journal.pone.0190534.
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Investigation of environmental factors on the prevalence of free bacteriophages against Shiga toxin-producing Escherichia coli strains in produce pre-harvest environment in Salinas, California
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Investigation of environmental factors on the prevalence of free bacteriophages against Shiga toxin-producing Escherichia coli strains in produce pre-harvest environment in Salinas, California
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Liao, Y., Quintela, I., Nguyen, K.M., Salvador, A., Cooley, M.B., Wu, V.C. 2017. Investigation of environmental factors on the prevalence of free bacteriophages against Shiga toxin-producing Escherichia coli strains in produce pre-harvest environment in Salinas, California. Meeting Proceedings. 2017 USDA-ARS/FSIS Annual Food Safety Meeting. NCTC, Shepherdstown, WV. Section Z, P13.
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Isolation and characterization of bacteriophages as potential agents against Shiga toxin – producing Escherichia coli (STEC) strains
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Quintela, I.A., Liao, Y., Valentine, D., Zhang, R., Anderson, G., Delos Reyes, B.G., Nguyen, K.M., Wu, V.C. 2017. Isolation and characterization of bacteriophages as potential agents against Shiga toxin – producing Escherichia coli (STEC) strains. Meeting Proceedings. . 2017 USDA-ARS/FSIS Annual Food Safety Meeting. NCTC, Shepherdstown, WV. Section Z, P12.
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