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ARS Home » Plains Area » College Station, Texas » Southern Plains Agricultural Research Center » Crop Germplasm Research » People & Locations » Joshua Udall (Josh)
Joshua A Udall (Josh)
Crop Germplasm Research
Research Geneticist (Plants)

Phone: (979) 260-9311
Fax: (979) 260-9333

2881 F&B ROAD
COLLEGE STATION, TX 77845

(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)

Projects
Pecan Breeding, Genomics, and Genetic Resource Management
In-House Appropriated (D)
  Accession Number: 434151
Cotton Genetic Resource Management and Genetic Improvement
In-House Appropriated (D)
  Accession Number: 434259
Pecan Breeding and Management of the National Collection of Carya Genetic Resources
In-House Appropriated (D)
  Accession Number: 443446
Exploiting Genetic Variation of Australian and African Diploid Accessions for American Tetraploid Cotton
Non-Funded Cooperative Agreement (N)
  Accession Number: 440883
Developing Genome Editing Resources for Modifying Genes to Improve Priority Traits in Cotton
Non-Funded Cooperative Agreement (N)
  Accession Number: 436913
Exploring the Genetics of Drought Resistance with Field-based Phenomics and Biophysical Process-based Modeling
Reimbursable Cooperative Agreement (R)
  Accession Number: 441631
Renewal and Advance of Cotton Genetic Resources Through Use of a Costa Rican Counter Season Nursery
Non-Assistance Cooperative Agreement (S)
  Accession Number: 442355
Developing Pecan Database Resources
Non-Assistance Cooperative Agreement (S)
  Accession Number: 440120
Continued Development of a Publicly Accessible Comprehensive Cotton Database
Non-Assistance Cooperative Agreement (S)
  Accession Number: 440329

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Comparative analysis of genome sequences of the two cultivated tetraploid cottons, Gossypium hirsutum (L. )and G. barbadense (L.) Reprint Icon - (Peer Reviewed Journal)
Meng, Q., Gu, J., Xu, Z., Zhang, J., Tang, J., Wang, A., Wang, P., Liu, Z., Rong, Y., Xie, P., Hui, L., Udall, J.A., Grover, C.E., Wendell, J.C. 2023. Comparative analysis of genome sequences of the two cultivated tetraploid cottons, Gossypium hirsutum (L.)and G. barbadense (L.). Industrial Crops and Products. https://doi.org/10.1016/j.indcrop.2023.116471. Article e116471.
Homology-based identification of candidate genes for male sterility editing in Upland cotton (Gossypium hirsutum L.) Reprint Icon - (Peer Reviewed Journal)
Morales, K., Bridgeland, A.H., Kater, H., Udall, J.A., Yu, J., Thompson, M. 2022. Homology-based identification of candidate genes for male sterility editing in Upland cotton (Gossypium hirsutum L.). Frontiers in Plant Science. Article e2022.1006264. https://doi.org/10.3389/fpls.2022.1006264.
The Gossypium herbaceum L. Wagad genome as a resource for understanding cotton domestication - (Peer Reviewed Journal)
CottonGen: The community database for cotton genomics, genetics, and breeding research Reprint Icon - (Peer Reviewed Journal)
Yu, J., Jung, S., Cheng, C., Lee, T., Zheng, P., Buble, K., Crabb, J., Humann, J., Hough, H., Jones, D., Campbell, B.T., Udall, J.A., Main, D. 2021. CottonGen: The community database for cotton genomics, genetics, and breeding research. International Journal of Molecular Sciences. 10(12):2805. https://doi.org/10.3390/plants10122805.
The Gossypium anomalum genome as a resource for cotton improvement and evolutionary analysis of hybrid incompatibility Reprint Icon - (Peer Reviewed Journal)
Grover, C.E., Yuan, D., Arick, M.A., Miller, E.R., Hu, G., Peterson, D.G., Wendel, J.F., Udall, J.A. 2021. The Gossypium anomalum genome as a resource for cotton improvement and evolutionary analysis of hybrid incompatibility. Genes, Genomes, Genetics. Article jkab319. https://doi.org/10.1093/g3journal/jkab319.
CottonGen: the community database for cotton genomics, genetics, and breeding research Reprint Icon - (Peer Reviewed Journal)
Yu, J., Jung, S., Cheng, C., Lee, T., Zheng, P., Buble, K., Crabb, J., Humann, J., Hough, H., Jones, D., Campbell, B.T., Udall, J.A., Main, D. 2021. CottonGen: the community database for cotton genomics, genetics, and breeding research . Plants. 10(12):2805. https://doi.org/10.3390/plants10122805.
Genome assembly of two nematode-resistant cotton lines (Gossypium hirsutum L.) Reprint Icon - (Peer Reviewed Journal)
Perkin, L.C., Bell, A.A., Hinze, L.L., Suh, C.P., Arick II, M.A., Peterson, D., Udall, J.A. 2021. Genome assembly of two nematode-resistant cotton lines (Gossypium hirsutum L.). G3, Genes/Genomes/Genetics. 11(11). Article jkab276. https://doi.org/10.1093/g3journal/jkab276.
The Gossypium stocksii genome as a novel resource for cotton improvement Reprint Icon - (Peer Reviewed Journal)
Grover, C.E., Yuan, D., Arick, M.A., Miller, E.R., Hu, G., Peterson, D.G., Wendel, J.F., Udall, J.A. 2021. The Gossypium stocksii genome as a novel resource for cotton improvement. G3, Genes/Genomes/Genetics. 11(7). Article jkab125. https://doi.org/10.1093/g3journal/jkab125.
Parallel and intertwining threads of domestication in allopolyploid cotton Reprint Icon - (Peer Reviewed Journal)
Yuan, D., Grover, C.E., Hu, G., Pan, M., Miller, E., Conover, J.L., Hunt, S., Udall, J.A., Wendel, J.F. 2021. Parallel and intertwining threads of domestication in allopolyploid cotton. Advanced Science. Article 2003634. https://doi.org/10.1002/advs.202003634.
Status of the National Cotton Germplasm Collection - (Abstract Only)
The Gossypium longicalyx genome as a resource for cotton breeding and evolution Reprint Icon - (Peer Reviewed Journal)
Grover, C.E., Pan, M., Yuan, D., Arick, M.A., Hu, G., Brase, L., Stelly, D.M., Lu, Z., Schmitz, R.J., Peterson, D.G., Wendel, J.F., Udall, J.A. 2020. The Gossypium longicalyx genome as a resource for cotton breeding and evolution. Genes, Genomes, Genetics. 10:1457-1467. https://doi.org/10.1534/g3.120.401050.
Exploiting genetic variation of Gossypium gene pools for cotton improvement - (Abstract Only)
Yu, J., Frelichowski, J.E., Hinze, L.L., Udall, J.A. 2020. Exploiting genetic variation of Gossypium gene pools for cotton improvement [abstract]. Plant and Animal Genome Conference, January 11-15, 2020, San Diego, California. W820.
Genetic analysis of the transition from wild to domesticated cotton (G. hirsutum L.) Reprint Icon - (Peer Reviewed Journal)
Grover, C.E., Yoo, M., Lin, M., Murphy, M.D., Harker, D.B., Byers, R.L., Lipka, A.E., Hu, G., Yuan, D., Conover, J., Udall, J.A., Paterson, A.H., Gore, M.A., Wendel, J. 2020. Genetic analysis of the transition from wild to domesticated cotton (G. hirsutum L.). G3, Genes/Genomes/Genetics. 10(2):731-754. https://doi.org/10.1534/g3.119.400909.
The genome sequence of Gossypioides kirkii illustrates a descending dysploidy in plants Reprint Icon - (Peer Reviewed Journal)
Udall, J.A., Long, E., Ramaraj, T., Conover, J.L., Yuan, D., Grover, C.E., Gong, L., Arick, M.A., Masonbrink, R.E., Peterson, D.G., Wendel, J.F. 2019. The genome sequence of Gossypioides kirkii illustrates a descending dysploidy in plants. Frontiers in Plant Science. 10:1541. https://doi.org/10.3389/fpls.2019.01541.
De novo genome assemblies of Gossypium raimondii and G. turneri Reprint Icon - (Peer Reviewed Journal)
Udall, J.A., Long, E., Hanson, C., Yuan, D., Ramaraj, T., Conover, J.L., Gong, L., Arick, M.A., Grover, C.E., Peterson, D.G., Wendel, J.F. 2019. De novo genome assemblies of Gossypium raimondii and G. turneri. G3, Genes/Genomes/Genetics. 9(10):3079-3085. https://doi.org/10.1534/g3.119.400392.
The first genetic map for yellow lupin enables genetic dissection of adaptation traits in an orphan grain legume crop Reprint Icon - (Peer Reviewed Journal)
Munir Iqbal, M., Huynh, M., Udall, J.A., Kilian, A., Adhikari, K.N., Berger, J.D., Erskine, W., Nelson, M.N. 2019. The first genetic map for yellow lupin enables genetic dissection of adaptation traits in an orphan grain legume crop. BioMed Central (BMC) Genetics. 20:68. https://doi.org/10.1186/s12863-019-0767-3.