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United States Department of Agriculture

Agricultural Research Service

Related Topics

James Frelichowski (Jim)
Crop Germplasm Research
Genetics

Phone: (979) 260-9209
Fax: (979) 260-9333

2881 F&B ROAD
COLLEGE STATION , TX 77845

Projects
Conservation, Genetic Analyses, and Utilization of Cotton Genetic Resources
In-House Appropriated (D)
  Accession Number: 424619
Developing Genomic and Genetic Tools for Exploiting Cotton Genetic Variation
In-House Appropriated (D)
  Accession Number: 424746
Genotypic and Phenotypic Analysis and Digital Imaging of Accessions in the US National Cotton Germplasm Collection
Non-Funded Cooperative Agreement (N)
  Accession Number: 424895
Digitization of the US National Cotton Germplasm Collection
Reimbursable Cooperative Agreement (R)
  Accession Number: 429205
Expand the Functionality and Content of a Publicly Accessible Comprehensive Cotton Database
Non-Assistance Cooperative Agreement (S)
  Accession Number: 430803
Associating Genotype, Phenotype, and Digital Images for Cotton Genetic Resources
Non-Assistance Cooperative Agreement (S)
  Accession Number: 426035

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Comparative phenotypic analysis of Gossypium raimondii with Upland cotton. -
Kim, H.J., Liu, Y., Dowd, M.K., Frelichowski, J.E., Delhom, C.D., Rodgers Iii, J.E., Thibodeaux, D.P. 2016. Comparative phenotypic analysis of Gossypium raimondii with Upland cotton.. Journal of Cotton Science. 20:132-144.
Measuring diversity in Gossypium hirsutum using the CottonSNP63K Array -
Hinze, L.L., Hulse-Kemp, A., Wilson, I., Zhu, Q., Llewellyn, D., Taylor, J., Spriggs, A., Fang, D.D., Ulloa, M., Burke, J.J., Giband, M., Lacape, J., Van Deynze, A., Udall, J., Scheffler, J.A., Hague, S., Pepper, A., Frelichowski, J.E., Lawley, C., Jones, D., Percy, R.G., Stelly, D. 2016. Measuring diversity in Gossypium hirsutum using the CottonSNP63K Array. In: Proceedings of the Beltwide Cotton Conferences, January 5-7, 2016, New Orleans, Louisiana. 2016 CDROM.
Genetic diversity of the two commercial tetraploid cotton species in the Gossypium Diversity Reference Set -
Hinze, L.L., Gazave, E., Gore, M.A., Fang, D.D., Scheffler, B.E., Yu, J., Jones, D.C., Frelichowski, J.E., Percy, R.G. 2016. Genetic diversity of the two commercial tetraploid cotton species in the Gossypium Diversity Reference Set. Journal of Heredity. 107(3):274-286.
Gossypolhemiquinone, a dimeric sesquiterpenoid identified in cotton (Gossypium) -
Stipanovic, R.D., Puckhaber, L.S., Frelichowski, J.E., Esquivel, J.F., Westbrook, J.K., O Neil, T.M., Bell, A.A., Dowd, M.K., Hake, K., Duke, S.E. 2015. Gossypolhemiquinone, a dimeric sesquiterpenoid identified in cotton (Gossypium). Phytochemistry. 122:165-171.
Comparative analysis of genome-wide divergence, domestication footprints and genome-wide association study of root traits for Gossypium hirsutum and Gossypium barbadense -
Gossypolone and Gossypolhemiquinone: Biological activity of terpenoids found in cotton (Gossypium) -
Stipanovic, R.D., Puckhaber, L.S., Frelichowski, J.E., Esquivel, J.F., Westbrook, J.K., O Neil, T.M., Bell, A.A., Dowd, M.K., Duke, S.E. 2015. Gossypolone and gossypolhemiquinone: Biological activity of terpenoids found in cotton (Gossypium). [abstract]. American Chemical Society Abstracts. A#ORGN 504.
Development of a 63K SNP array for Gossypium and high-density mapping of intra- and inter-specific populations of cotton (G. hirsutum L.) -
Hulse-Kemp, A.M., Lemm, J., Plieske, J., Ashrafi, H., Buyyarapu, R., Fang, D.D., Frelichowski, J.E., Giband, M., Hague, S., Hinze, L.L., Kochan, K., Riggs, R., Scheffler, J.A., Udall, J.A., Ulloa, M., Wang, S., Zhu, Q., Bag, S.K., Bhardwaj, A., Burke, J.J., Byers, R.L., Claverie, M., Gore, M.A., Harker, D.B., Islam, M.S., Jenkins, J.N., Jones, D.C., Lacape, J., Llewellyn, D.J., Percy, R.G., Pepper, A.E., Poland, J.A., Rai, K., Sawant, S.V., Singh, S., Spriggs, A., Taylor, J.M., Wang, F., Yourstone, S.M., Zheng, X., Lawley, C.T., Ganal, M.W., Van Deynze, A., Wilson, L.W., Stelly, D.M. 2015. Development of a 63K SNP array for Gossypium and high-density mapping of intra- and inter-specific populations of cotton (G. hirsutum L.). Genes, Genomes, Genetics. 5:1187-1209. doi:10.1534/g3.115.018416.
Molecular characterization of the Gossypium diversity reference set of the US National Cotton Germplasm Collection -
Hinze, L.L., Fang, D.D., Gore, M.A., Scheffler, B.E., Yu, J., Frelichowski, J.E., Percy, R.G. 2015. Molecular characterization of the Gossypium diversity reference set of the US National Cotton Germplasm Collection. Theoretical and Applied Genetics. 128(2):313-327.
New HPLC methods to quantitate terpenoid aldehydes in foliage of cotton (Gossypium) -
Puckhaber, L.S., Frelichowski, J.E., Bell, A.A., Stipanovic, R.D. 2014. New HPLC methods to quantitate terpenoid aldehydes in foliage of cotton (Gossypium). Journal of Natural Products. 4(3):188-195.
Non-destructive measurements of cottonseed nutritional trait diversity in the US National Cotton Germplasm Collection -
Hinze, L.L., Horn, P.J., Kothari, N., Dever, J.K., Frelichowski, J.E., Chapman, K.D., Percy, R.G. 2015. Non-destructive measurements of cottonseed nutritional trait diversity in the US National Cotton Germplasm Collection. Crop Science. 55:770-782.
The U.S. National Cotton Germplasm Collection – its Contents, Preservation, Characterization, and Evaluation -
Percy, R.G., Frelichowski, J.E., Arnold, M., Campbell, B.T., Dever, J., Fang, D.D., Hinze, L.L., Main, D., Scheffler, J.A., Sheehan, M., Ulloa, M., Yu, J., Yu, J. 2014. The U.S. National Cotton Germplasm Collection – its Contents, Preservation, Characterization, and Evaluation. In: Abdurakhmonov, I. Editor. World Cotton Germplasm Resources. Rijeka, Croatia: InTech. 167-201. Available: http://www.intechopen.com/books/world-cotton-germplasm-resources/the-u-s-national-cotton-germplasm-collection-its-contents-preservation-characterization-and-evaluation.
Mining cotton germplasm resources to fight Cotton Leaf Curl Virus -
Scheffler, J.A., Frelichowski, J.E., Love, J., Malloy, W. 2014. Mining cotton germplasm resources to fight Cotton Leaf Curl Virus. National Cotton Council Beltwide Cotton Conference. Paper No. 15471.
Seed oil and protein diversity among Gossypium accessions in the U.S. National Cotton Germplasm Collection -
Molecular diversity among G. hirsutum accessions in the Gossypium Diversity Reference Set -
Genetic diversity in the U.S. Cotton Germplasm Collection as revealed by SSR markers -
International efforts to protect the global cotton genetic resources -
Campbell, B.T., Park, W., Percy, R.G., Frelichowski, J.E., Saha, S., Jenkins, J.N., Mayee, C., Gormare, V., Dessauw, D., Giband, M., Du, X., Jia, Y., Constable, G., Dillon, S., Abdurakhmonov, I.Y., Abdukarimov, A., Rizaeva, S.M., Adullaev, A., Barroso, P., Hoffmann, L.V., Padua, J.G., Podolnaya, L. 2011. International efforts to protect the global cotton genetic resources [Abstract]. In: Proceedings of the American Society of Agronomy, Crop Science Society of America, Soil Science Society of America International Annual Meeting, October 16-19, 2011, San Antonio, Texas. CDROM.
Preliminary assessment of the efficiency of a core marker set in revealing genetic diversity in the U.S. germplasm collection -
Percy, R.G., Fang, D.D., Hinze, L.L., Yu, J., Frelichowski, J.E., Scheffler, B.E., Gore, M.A. 2011. Preliminary assessment of the efficiency of a core marker set in revealing genetic diversity in the U.S. germplasm collection. In: Proceedings of the National Cotton Council Beltwide Cotton Conference, January 4-7, 2011, Atlanta, Georgia. 2011 CDROM.
Coordination and collaboration to document the global cotton germplasm resources -
Frelichowski, J.E., Campbell, B.T., Saha, S., Percy, R.G., Jenkins, J.N., Park, W., Mayee, C., Gotmare, V., Dessauw, D., Giband, M. 2010. Coordination and collaboration to document the global cotton germplasm resources. Proceedings of the International Cotton Genome Initiative Workshop, September 21-23, 2010, Canberra, Australia. p. 24.
Status of the global cotton germplasm resources Reprint Icon -
Campbell, B.T., Saha, S., Jenkins, J.N., Park, W., Percy, R.G., Frelichowski, J.E., Mayee, C., Gotmare, V., Dessauw, D., Giband, M., Du, X., Jia, Y., Constable, G., Dillon, S., Abdurakhmonov, I.Y., Abdukarimov, A., Rizaeva, S.M., Adullaev, A.A., Barroso, P.V., Padua, J.G., Hoffman, L.V., Podolnaya, L. 2010. Status of the global cotton germplasm resources. Crop Science. 50:1161-1179.
Development of core SSR markers for Gossypium germplasm characterization -
Yu, J., Fang, D.D., Ulloa, M., Percy, R.G., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Cho, J., Campbell, B.T., Chee, P., Zhang, J., Abdurakhmonov, I., Abdukarimov, A., Jones, D.C. 2010. Development of core SSR markers for Gossypium germplasm characterization [abstract]. In: Proceedings of the National Cotton Council Beltwide Cotton Conferences, January 4-7, 2010, New Orleans, Louisiana. p. 811. CDROM.
Portable DNA markers tailored for systematic characterization of Gossypium germplasm -
Yu, J., Fang, D.D., Ulloa, M., Percy, R.G., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Cho, J., Campbell, B.T., Chee, P., Abdurakhmonov, I., Abdukarimov, A., Jones, D.C. 2010. Portable DNA markers tailored for systematic characterization of Gossypium germplasm [abstract]. In: Plant and Animal Genome Conference Proceedings, January 9-13, 2010, San Diego, California. P149.
Global view of cotton germplasm resources -
Saha, S., Campbell, B.T., Jenkins, J.N., Park, W., Percy, R.G., Frelichowski, J.E., Mayee, C., Gotmare, V., Dessauw, D., Giband, M., Du, Y., Jia, Y., Constable, G., Dillon, S., Abdurakhmonov, A., Abdukarimov, A.A., Rizaeva, S., Adullaev, A.A., Barroso, P.A., Padua, J.G., Hoffmann, L.V. 2009. Global view of cotton germplasm resources. National Cotton Council Beltwide Cotton Conference. p. 658.
CottonDB: A resource for cotton genome research -
Yu, J., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Xu, Z., Yu, J., Percy, R.G. 2009. CottonDB: A resource for cotton genome research [abstract]. In: Proceedings of the Plant and Animal Genome Conference, January 10-14, 2009, San Diego, California. 2009 CDROM.
CottonDB: A database for cotton research -
Yu, J., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Xu, Z., Yu, J., Percy, R.G. 2009. CottonDB: A database for cotton research [abstract]. Proceedings of the Beltwide Cotton Conferences, January 5-8, 2009, San Antonio, TX. 2009 CDROM.
Cotton -
Hague, S., Hinze, L.L., Frelichowski, J.E. 2009. Cotton. In: Vollman, J., Rajcan, I., editors. Handbook of Plant Breeding. New York, NY: Springer-Verlag. p. 257-285.
CottonDB enhancement -
Yu, J., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Xu, Z., Yu, J., Percy, R.G. 2008. CottonDB enhancement [abstract]. In: Proceedings of the International Cotton Genome Initiative Workshop, July 8-11, 2008, Anyang, China. p. 120.
CottonDB: Cotton Genome Database -
Yu, J., Hinze, L.L., Frelichowski, J.E., Xu, Z., Yu, J., Kohel, R.J. 2008. CottonDB: Cotton Genome Database [abstract]. In: Proceedings of Plant and Animal Genome Conference XVI, January 12-16, 2007, San Diego, California. Paper No. W253.
International Genetic, Cytogenetic and Germplasm Resources for Cotton Genomics and Genetic Improvement -
Stelly, D.M., Lacape, J., Dessauw, E.G.A.D., Kohel, R.J., Mergeai, G., Sanamyan, M., Adburakhmonov, I.Y., Zhang, T., Wang, K., Saha, S., Frelichowski, J.E. 2007. International genetic, cytogenetic and germplasm resources for cotton genomics and genetic improvement. In: Proceedings of International Cotton Advisory Committee World Cotton Research Conference, September 10-14, 2007, Lubbock, Texas.
Survey of 42,000 Gossypium hirsutum cv. Maxxa BAC-End Sequences and Frequency, Type, and Annotation of BAC-derived SSRs. -
Palmer, M.B., Frelichowski, J., Main, D., Ulloa, M., Cantrell, R., Ficklin, S., Tomkins, J.P. 2007. Survey of 42,000 Gossypium hirsutum cv. Maxxa BAC-End Sequences and Frequency, Type, and Annotation of BAC-derived SSRs. National Cotton Council Beltwide Cotton Conference. p. 2107.
Diversity Among Landraces of Gossypium hirsutum and D-genome Species Determined by SSR Markers. -
Ulloa, M., Frelichowski, J.E., Stewart, J.M. 2006. Diversity among Landraces of Gossypium hirsutum and D-genome Species Determined by SSR Markers. International Cotton Genome Initiative Workshop. Brasilia DF, Brazil. p. 13-14.
DIVERSITY ASSESSMENT IN COTTON WITH NEW GENETICALLY MAPPED MICROSATELLITE MARKERS. -
Frelichowski, J.E., Ulloa, M. 2006. Diversity assessment in cotton with new genetically mapped microsatellite markers. Plant and Animal Genome XIV Conference Proceedings. p. 136.
DEVELOPMENT OF PCR-BASED MARKERS FROM FIBER ESTS AND BAC-END SEQUENCES FOR THE CONSTRUCTION OF A CONSENSUS COTTON GENETIC MAP. -
Ulloa, M., Frelichowski, J.E., Palmer, M., Park, Y.h., Alabady, M.S., Wilkins, T.A., Yu, J., Kohel, R., Cantrell, R., Main, D., Tomkins, J.P., Stelly, D., VanDeynze, A. 2006. Development of PCR-based markers from fiber ESTs and BAC-end sequences for the construction of a consensus cotton genetic map. Plant and Animal Genome XIV Conference Proceedings. p. 42.
PROGRESS REPORT FOR THE EVALUATION OF COTTON LANDRACES FROM THE USDA-ARS COTTON GERMPLASM COLLECTION. -
Frelichowski Jr., J.E., Ulloa, M. 2006. Progress report for the evaluation of cotton landraces from the USDA-ARS cotton germplasm collection. National Cotton Council Beltwide Cotton Conference. p. 771-773.
Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends. -
Frelichowski, J.E., Palmer, M.B., Main, D., Tomkins, J.P., Cantrell, R.G., Stelly, D.M., Yu, J., Kohel, R.J., Ulloa, M. 2006. Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends. Mol. Genet. Genom. 275:479-491.
GERMPLASM EVALUATION OF COTTON ACCESSIONS FROM THE U.S. COTTON GERMPLASM COLLECTION, USDA-ARS (GOSSYPIUM HIRSUTUM L. LANDRACES OF MEXICO). -
Frelichowski, J., Ulloa, M., Percival, A., Stewart, J., Cantrell, R. 2005. Germplasm evaluation of cotton accessions from the U.S. cotton germplasm collection, USDA-ARS (Gossypium hirsutum L. Landraces of Mexico). National Cotton Council Beltwide Cotton Conference. p. 1020-1024.
NEW BAC-END DERIVED MICROSATELLITE MARKERS IN COTTON (GOSSYPIUM HIRSUTUM L.) ACALA 'MAXXA'. -
Frelichowski, J.E., Ulloa, M., Tomkins, J.P., Palmer, M., Main, D., Stelly, D., Cantrell, R.G. 2004. New Bac-end derived microsatellite markers in cotton (Gossypium hirsutum L.) Acala 'Maxxa'. ASA-CSSA-SSA Annual Meeting Abstracts. p. 5613.
EVALUATION OF GERMPLASM WITH MICROSATELLITES. -
Ulloa, M., Stewart, J.M., Park, Y., Frelichowski, J.E. 2004. Evaluation of germplasm with microsatellites. International Cotton Genome Initiative Workshop. p. 95.
EST-DERIVED MICROSATELLITE MARKERS AS A SOURCE FOR MAPPING FIBER QUALITY QTL IN COTTON (GOSSYPIUM SPP.) -
Park, Y.H., Ulloa, M., Alabady, M.S., Frelichowski, J.E., Wilkins, T., Stelly, D.M., Cantrell, R.G. 2005. Est-derived microsatellite markers as a source for mapping fiber quality QTL in cotton (Gossypium spp.). Plant and Animal Genome XIII Conference Proceedings. p. 110.
GENETIC, PHYSICAL AND QTL MAPPING ASSESSMENTS OF BAC-END DERIVED MICROSATELLITE MARKERS DEVELOPED FROM COTTON (GOSSYPIUM HIRSUTUM L.) ACALA 'MAXXA'. -
Frelichowski, J.E., Ulloa, M., Palmer, M., Main, D., Tomkins, J.P., Stelly, D.M., Kohel, R.J., Yu, J., Cantrell, R.G. 2005. Genetic, physical and QTL mapping assessments of bac-end derived microsatellite markers developed from cotton (gossypium hirsutum l.) acala cv. 'maxxa'. Plant and Animal Genome XIII Conference Proceedings. p. 225.
HIGH-THROUGHPUT DEVELOPMENT OF NEW MOLECULAR MARKERS FOR COTTON. -
Palmer, M.B., Main, D., Frelichowski, J., Tomkins, J.P., Ulloa, M. 2004. High-throughput development of new molecular markers for cotton. National Cotton Council Beltwide Cotton Conference. p. 1131.
Last Modified: 5/2/2016
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