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ARS Home » Pacific West Area » Maricopa, Arizona » U.S. Arid Land Agricultural Research Center » Water Management and Conservation Research » Research » Publications at this Location » Publication #239750

Title: Using Real-time Quantitative PCR to Examine the Dynamics of Soil Fungi and Bacteria in Response to Ecosystem Warming

item McLain, Jean
item Wall, Gerard - Gary
item Kimball, Bruce
item OTTMAN, MICHAEL - University Of Arizona
item White, Jeffrey

Submitted to: Meeting Abstract
Publication Type: Proceedings
Publication Acceptance Date: 4/20/2009
Publication Date: 11/1/2009
Citation: Mclain, J.E., Wall, G.W., Kimball, B.A., Ottman, M.J., and White, J.W. (2009). Using Real-time Quantitative PCR to Examine the Dynamics of Soil Fungi and Bacteria in Response to Ecosystem Warming. Presented at the ASA-CSSA-SSSA International Annual Meeting, Pittsburgh, PA, Nov. 1-5, 2009.

Interpretive Summary:

Technical Abstract: As atmospheric trace gas concentrations and global temperatures climb, scientists are challenged to determine how microbial communities may mediate plant response to future climate change. To this end, a Temperature Free-Air Controlled Enrichment (T-FACE) experiment was implemented in a spring wheat (Triticum aestivum) field in Maricopa, Arizona. The T-FACE system features infrared-heater-based warming of the canopy by 3 and 1.5 oC during night-and daytime, respectively. Following a December 2008 planting, soil samples were collected on 13 Jan, 30 Jan, and 18 Feb 2009 at three different depths (0-5; 5-10; and 10-15 cm) from heated plots, non-heated open control plots, and reference plots with “dummy” non-functional heaters. Following soil DNA extraction, real-time PCR was used to quantify bacterial and fungal markers. Results from the first sampling revealed strong responses in microbial biomass to soil heating, averaging 2.3 x 107 (bacterial) and 6.0 x 105 (fungal) markers g-1 dry soil in the 0-15 cm depth of heated soils, and 9.0 x 105 (bacterial) and 1.3 x 104 (fungal) markers in control soils. Increases in fungal markers under T-FACE were largest in the 0-5 cm depth, averaging 5.3 x 106 and 3.2 x 103 markers g-1 dry soil in heated and control plots, respectively, while bacterial markers increased most dramatically in the 10-15 cm depth (4.4 x 107 and 7.7 x 105 g-1 dry soil in heated and control, respectively). No statistical differences were found in microbial markers between control and reference plots. Work quantifying microbial markers later in the growing season is currently underway. Knowledge of microbial response to increased temperatures will aid our ability to predict the interactions of plant species with their biological and physical environments in response to future climate change.