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Lincoln Cluster Analysis
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Data file statistics & edits

 

NLSBA provided NAGP with access to their database for this analysis.  There were 13,458 records from animals born from 1976-2007.  Of these, 8,972 (66.7%) were ewes and 4,486 (33.3%) were rams.  Birth years were unknown for 12.9% of the data.  The only data edits needed were for 2 rams that appeared as their own sire.  Their sire was converted to unknown.  Sires were known for 89.0% of the animals and dams were known for 88.9%.  There have been 1,136 sires and 4,501 dams during the lifetime of the database.

 

Registrations by birth year

 

The oldest registered animal was born in 1976; registrations did not greatly increase until 1993.  The number of registrations by birth year have remained relatively stable since 1994, as shown in Figure 1.  Registrations for 2007 are incomplete.

 

Figure 1.  Registrations by Birth Year

Color

 

For all of the animals in the file, 14% registered were colored and 86% were white.  However, this has not remained consistent over time, as shown in Figure 2.  Starting in 2002, there has been an explosion of colored Lincoln registrations.  If the rest of 2007 follows the current trend, more colored Lincolns will be registered than white.

 

Figure 2.  Percent Colored and White Registrations by Birth Year

Birth type

 

The majority of lambs are born as twins, followed by singles and triplets.  Only 0.3% of registered lambs were born as quads or quints.  Figure 3 shows the trend over time for single, twin, and triplet registrations.  The trend has remained fairly stable over time, but the proportion of singles has increased in recent years.

 

Figure 3.  Birth Type by Birth Year

Breeders

 

There are 340 breeders in the database.  The number of birth years a breeder has registered sheep ranges from 1 to 17, with an average of 3.7 years.  The vast majority have only registered sheep for 1 or 2 years, as shown in Figure 4.  Conservation of a rare breed requires a careful breeding strategy due to the limited gene pool available from which to select breeding animals.  Managing these limited resources is made more difficult if breeders are transient.  It is encouraging to see that a fairly large number of breeders have been registering animals for 5+ years.

 

Figure 4.  Number of Birth Years a Breeder has Registered Sheep

Even though there are a lot of breeders entering and leaving the industry each year, the total number of breeders has remained stable since 1994 (Figure 5).  Although the breed isn't expanding, it also isn't shrinking.

 

Figure 5.  Number of Breeders by Birth Year

Exchange of genetics

 

While mapping out the current location of active rams, defined as those who sired lambs in 2006 and/or 2007, it became clear that the majority of rams were not being retained by their breeders.  Of the 149 active rams, 116 (77.9%) were owned by someone other than the person that bred them.  This is a surprisingly large exchange of genetics.  Not only are the rams being exchanged, they are moving throughout the country.  Eighty-six of the 149 rams are owned in a different state than the one in which they were born.

 

The 2006-2007 lamb crop is primarily concentrated in the Northeast and the eastern section of the Midwest with another group in the Pacific Northwest.  The most lambs in this period were born in Illinois (163), Michigan (121), and Oregon (92).

 

Current breeding population

 

There were 149 rams and 722 ewes that produced the lambs born in 2006 and 2007 (to date).  The birth year of the rams ranged from 1998 to 2006.  There were 5 2006 born rams that have already had offspring in 2007, indicating a relatively young age at puberty for such a large-framed breed.  Table 1 shows the number of lambs these rams sired in 2006-2007.  The industry is using a large number of rams, with the most dominant ram siring only 60 lambs in this period of time; the next highest had 37 lambs.

 

Table 1.  Number of Rams that Sired 2006-2007 Born Lambs

The ewes that produced the 2006-2007 lamb crop ranged in birth year from 1994 to 2006.  There were 5 2006 born ewe lambs that have already had lambs in 2007, indicating age at puberty is early on the female side as well.

 Inbreeding (F)

 

The pedigree was traced back until ancestors were unknown.  The final pedigree file contained 13,558 animals.  Since the breed registry is relatively new, the pedigrees are shallow and inbreeding levels are likely higher than shown here.  The average inbreeding across the breed was 2.7%, with a range from 0 to 53.1%.  The frequency distribution of inbreeding percentage is shown in Table 2.  The vast majority have an inbreeding coefficient of 0, but some of these are animals with unknown pedigrees, such as foundation animals.

 

Table 2.  Frequency Distribution of Inbreeding Across Lincoln Pedigree

The average inbreeding level of animals born so far in 2007 is 4.4% with 68.6% of those animals having an inbreeding coefficient greater than 0.  The inbreeding trend and percent of inbred animals is shown in Figure 6.  Average inbreeding has remained stable over the past 7 years even as the percent of inbred animals has steadily increased.

 

Figure 6.  Inbreeding Trend and Percent Inbred Animals by Birth Year

Cluster analysis

 

The ever-present decision facing the NAGP is which males to collect for the gene bank.  In order to capture the maximum genetic diversity of each breed, we try to sample lowly related males from across the population.  The lowest related males should have the fewest alleles in common, allowing us to capture all (or most) of the allelic diversity within the breed.  Pedigree relationship data is used to group the available pool of animals into groups that are similar to each other (highly related) and lowly related to other groups.  Then, individual males within each cluster can be targeted for collection.  If chosen males are not available, a substitute from the same cluster can be used instead.

 

The cluster analysis included the relationship between the 149 rams that sired the 2006-2007 lamb crop.  These are the males assumed to be available from which to collect.  If they are not available, it is known they have offspring, so a son might be available as a replacement.  The analysis resulted in 16 distinct groups of rams.  The average relationship between the 149 rams was 2.4%.  Table 3 shows the average relationship within each of the 16 clusters.

 

Table 3.  Within Cluster Relationship of 149 Lincoln Rams

All of the clusters have a high average relationship with the exception of cluster 16.  To put the relationships into perspective, a 0.25 relationship is the equivalent of a half-sib and 0.125 is equivalent to a cousin.  Cluster 16 is a cluster where the animals that don't fit anywhere else got placed.  They would be expected to have a high level of genetic diversity and should be sampled heavier than other clusters.

 

As stated earlier, the clusters not only have a high degree of relatedness within each cluster, but a low degree of relatedness between clusters.  This can be seen in Table 4.

 

Table 4.  Between Cluster Relationship of 149 Lincoln Rams

Appendix 1 is a list of rams, their cluster, and current owner.

 

Appendix 1.  Rams by Cluster and Owner

ID

Cluster

Owner

OwnerState

5245

1

RACHAEL CAVENER

MO

5981

1

 CAMPBELL BROTHERS

OH

6242

1

HARVEY WARRICK & ED HAMMETT

MI

6670

1

DUSTI VANDERWENDE

DE

6672

1

MEEK FAMILY

RI

6718

1

MCKENNA MATER

MI

7070

1

ZACHARY TODD & CAMERON MILLINIX

MD

7380

1

ADAM GRAYBEAL

MD

7480

1

K BENJAMIN

MI

7886

1

JESSICA SHELBY

IN

88313

1

 CAMPBELL BROTHERS

OH

89029

1

JOSEPH H & CAROL J HADDOCK

VT

7328

2

TAYLOR MEEK

RI

7591

2

MINDY GIBSON

MO

7618

2

BRUCE & ELIZABETH NEWTON

NH

88991

2

BEVERLY T BOERSMA

IL

90399

2

WENDY CAMERON

MA

6621

3

SHARON PRIBBERNOW

WI

6624

3

JOYCE & GERALD COGGINS & FAMILY

NC

6625

3

JAN BRASH

ND

6693

3

BILL & DIANE DUBRAY

WA

6695

3

PENNY DODDS

OR

6953

3

BILL & DIANE DUBRAY

WA

7191

3

PENNY DODDS

OR

7205

3

CHRISTINE L BAZANT

OR

7213

3

KAY & DAVID HATCH

IL

89848

3

WATKINS

WI

C5697

3

JANE LANDVATTER

WI

C88759

3

EDWIN & LINDA WISE

WI

86576

4

PHILIP & LINDSEY REISTER

WA

89633

4

BEVERLY T BOERSMA

IL

89635

4

BEVERLY T BOERSMA

IL

89872

4

LINDSEY REISTER

WA

5881

5

FRANK & BETTY DAVIS

PA

6995

5

DAWN LANTZ

WA

7397

5

KATY CAIN

CA

88364

5

BOB & SHARRY BONE

NM

89351

5

 CAMPBELL BROTHERS

OH

C6578

5

JOSEPH H & CAROL J HADDOCK

VT

C88687

5

DONALD E BISCHOF

OR

C88830

5

BRIAN LARSON

MI

6266

6

EILEEN P HORDYK

WA

6268

6

JIM & DONNA LEIN

IA

6734

6

LAUREN SIMPSON

MT

7511

6

LAUREN SIMPSON

MT

87373

6

MIKE CLIFFORD

CA

88838

6

LORAINE POWELL

CA

88921

6

JOSEPH H & CAROL J HADDOCK

VT

89608

6

JIM & DONNA LEIN

IA

5955

7

RACHAEL CAVENER

MO

6603

7

EDWIN & LINDA WISE

WI

6750

7

DUSTI VANDERWENDE

DE

6784

7

SAE JIN TROMBLEY

NY

6988

7

KIERNAN SHEA

NJ

7242

7

FRANK & BETTY DAVIS

PA

87260

7

RICHARD CROME

IL

87438

7

DUSTI VANDERWENDE

DE

87516

7

BEVERLY T BOERSMA

IL

88501

7

JIM & DONNA LEIN

IA

88824

7

BRIAN LARSON

MI

89487

7

MIKE CLIFFORD

CA

89489

7

PER PETTERSSON

WA

89568

7

RACHEL MANNING

MD

89701

7

WENDY CAMERON

MA

89729

7

DUSTI VANDERWENDE

DE

89916

7

ELENA BODE

MD

89952

7

SHARON PRIBBERNOW

WI

90208

7

RICHARD CROME

IL

90371

7

KAYLI MOHR

IL

89006

8

DONALD E BISCHOF

OR

89008

8

DIANE KLINGELHOFER

MD

89619

8

PER PETTERSSON

WA

89620

8

KAROL WILLIE

OR

89915

8

K MANSFIELD

WV

6446

9

DR ELIZABETH PANTZER

IN

6760

9

JENNIFER GARRETT

MI

6795

9

JENNIFER GARRETT

MI

7167

9

BOB & SHARRY BONE

NM

7699

9

NANCY IRLBECK

CO

88187

9

CHARLOTTE SANFORD-CRANE

MD

88683

9

TRAVIS COGGINS

NC

88751

9

JACKMAN

MI

89268

9

ROY & MYRTLE DOW

CO

89697

9

GARTH & JANE TEN NAPEL

TX

89766

9

BRIAN LARSON

MI

90240

9

JAMIE COLEMAN

CT

6494

10

CHRISTIANE PAYTON

OR

6614

10

CHRISTIANE PAYTON

OR

6973

10

ROBERT LAMOUREUX

CT

6806

11

CHRISTINE L BAZANT

OR

7357

11

SUSAN A HANKS

IN

7362

11

SUSAN A HANKS

IN

86335

11

SUSAN A HANKS

IN

90063

11

NAOMI GUNKEL

PA

6626

12

WATKINS

WI

6792

12

EDWIN & LINDA WISE

WI

6919

12

CHRISTIANE PAYTON

OR

7463

12

CLETUS ZENK FAMILY

MI

87580

12

WATKINS

WI

88333

12

HARVEY K WARRICK

MI

88907

12

RICHARD & DIANNE FETTE

IA

89411

12

NORM PARKER

WI

89438

12

ROY & MYRTLE DOW

CO

89806

12

LAUREN SIMPSON

MT

90781

12

SUSAN A HANKS

IN

87582

13

JIM & DONNA LEIN

IA

89609

13

HAHN

KY

89745

13

EDWIN & LINDA WISE

WI

5592

14

HAHN

KY

6068

14

MIKE CLIFFORD

CA

6558

14

 CAMPBELL BROTHERS

OH

6560

14

LORAINE POWELL

CA

6568

14

KATY CAIN

CA

6573

14

ZACHARY TODD & CAMERON MILLINIX

MD

7312

14

MARKUS, MACKENZIE & MARAN TENNIS

IL

7316

14

NOAH DART

IL

7426

14

MIKE CLIFFORD

CA

7432

14

KELLY WRIGHT

MD

7620

14

EMMALINE LONG

NY

6583

15

DIANE KLINGELHOFER

MD

6785

15

 CAMPBELL BROTHERS

OH

6862

15

DAVID POPIELINSKI

NY

7092

15

JAY & RACHEL FEELEY

VT

7120

15

SAE JIN TROMBLEY

NY

7287

15

AUBREY DESJARLAIS

CT

7337

15

TAYLOR MEEK

RI

5744

16

ROBERT LAMOUREUX

CT

6334

16

LLOYD & PHYLLIS BURGENER

WI

6653

16

DAVID POPIELINSKI

NY

6775

16

MARKUS, MACKENZIE & MARAN TENNIS

IL

7115

16

ROGER WATKINS

WI

7175

16

JODI MILSKE FAMILY

WI

81562

16

HARVEY K WARRICK

MI

86983

16

JOHN N HARDING

IL

87158

16

DEBBIE BENDER

WI

87440

16

WILLIAM & CELINDA BANKHEAD

MD

87479

16

ROBERT EADE

IL

88550

16

ANDRE MILLER

ME

88705

16

DELBERT A KESSI

OR

89056

16

CODY THOMPSON

WA

89393

16

JOHN N HARDING

IL

89461

16

BILL & DIANE DUBRAY

WA

89462

16

BILL & DIANE DUBRAY

WA

89528

16

BOB HEGGEMEIER

IL

89654

16

RALPH GROEFSEMA

ID

89676

16

AARON W F JOHNSON

OR

89932

16

JOHN N HARDING

IL

90076

16

DONALD WOODS

IL

C7273

16

AI IMPORT

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