Frank Harmon
Plant Gene Expression Center
Research Molecular Biologist
Phone: (510) 559-5939
Fax: (510) 559-5678
(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
Publications
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Sorghum bicolor INDETERMINATE1 is a conserved primary regulator of flowering
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De Riseis, S., Chen, J., Xin, Z., Harmon, F.G. 2023. Sorghum bicolor INDETERMINATE1 is a conserved primary regulator of flowering. Frontiers in Plant Science. 14. Article 1304822. https://doi.org/10.3389/fpls.2023.1304822.
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Unique and overlapping functions for the transcriptional regulators KANADI1 and ULTRAPETALA1 in Arabidopsis gynoecium and stamen gene regulation
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Hagelthorn, L., Monfared, M.M., Talo, A., Harmon, F.G., Fletcher, J.C. 2023. Unique and overlapping functions for the transcriptional regulators KANADI1 and ULTRAPETALA1 in Arabidopsis gynoecium and stamen gene regulation. Plant Direct. 7(5). Article 7:e496. https://doi.org/10.1002/pld3.496.
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Impact of the sickle mutant and temperature on the structure of transcripts and RNAs from Arabidopsis thaliana
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Marshall, C.M., Harmon, F.G. 2022. Impact of the sickle mutant and temperature on the structure of transcripts and RNAs from Arabidopsis thaliana. BMC Research Notes. 15. Article 110. https://doi.org/10.1186/s13104-022-05963-y.
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72-hour diurnal RNA-seq analysis of fully expanded third leaves from maize, sorghum, and foxtail millet at 3-hour resolution
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Lai, X., Bendix, C., Zhang, Y., Schnable, J.C., Harmon, F.G. 2021. 72-hour diurnal RNA-seq analysis of fully expanded third leaves from maize, sorghum, and foxtail millet at 3-hour resolution. BMC Research Notes. 14. Article 24. https://doi.org/10.1186/s13104-020-05431-5.
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A sorghum gigantea mutant attenuates florigen gene expression and delays flowering time
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Abdul-Awal, S., Chen, J., Xin, Z., Harmon, F.G. 2020. A sorghum gigantea mutant attenuates florigen gene expression and delays flowering time. Plant Direct. 4(11). Article e00281. https://doi.org/10.1002/pld3.281.
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Temporal regulation of metabolome and proteome in photosynthetic and photorespiratory pathways contributes to maize heterosis
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Li, Z., Zhu, A., Song, Q., Chen, H.Y., Harmon, F.G., Chen, Z. 2020. Temporal regulation of metabolome and proteome in photosynthetic and photorespiratory pathways contributes to maize heterosis. The Plant Cell. 32(12):3706-3722. https://doi.org/10.1105/tpc.20.00320.
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Interspecific analysis of diurnal gene regulation in panicoid grasses identifies known and novel regulatory motifs
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Lai, X., Bendix, C., Yan, L., Zhang, Y., Schnable, J., Harmon, F.G. 2020. Interspecific analysis of diurnal gene regulation in panicoid grasses identifies known and novel regulatory motifs. BMC Genomics. 21. Article 428. https://doi.org/10.1186/s12864-020-06824-3.
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MicroRNAs and new biotechnological tools for its modulation and improving stress tolerance in plants
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Basso, M.F., Ferreira, P.G., Kobayashi, A.K., Harmon, F.G., Nepomuceno, A.L., Molinari, H.C., Grossi-de-Sa, M.F. 2019. MicroRNAs and new biotechnological tools for its modulation and improving stress tolerance in plants. Plant Biotechnology Journal. 17(8):1482-1500. https://doi.org/10.1111/pbi.13116.
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Insights into soybean transcriptome reconfiguration under hypoxic stress: Functional, regulatory, structural, and compositional characterization
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Nakayama, T.J., Rodrigues, F.A., Neumaier, N., Marcolina-Gomes, J., Molinari, H.B., Santiago, T.R., Formighieri, E.F., Basso, M.F., Farias, J.R., Emygdio, B.M., De Oliveira, A.C., Campos, A.D., Borem, A., Coleman-Derr, D.A., Mertz-Henning, L.M., Nepomuceno, A. 2017. Insights into soybean transcriptome reconfiguration under hypoxic stress: Functional, regulatory, structural, and compositional characterization. PLoS One. 12(11):e0187920. https://doi.org/10.1371/journal.pone.0187920.
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SPF45-related splicing factor for phytochrome signaling promotes photomorphogensis by regulating pre-mRNA splicing in arabidopsis
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Xin, R., Zhu, L., Salome, P.A., Mancini, E., Marshall, C.M., Harmon, F.G., Yanovsky, M.J., Weigel, D., Huq, E., 2017. SPF45-related splicing factor for phytochrome signaling promotes photomorphogensis by regulating pre-mRNA splicing in Arabidopsis. Proceedings of the National Academy of Sciences(PNAS). 114(33):E7018-E7027. https://doi.org/10.1073/pnas.1706379114.
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Functional characterization of a putative glycine max ELF4 transgenic aradopsis and its role during flowering control
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Gomes, J.M., Henning, L.M., Fuganti-Pagliarini, R., Nepomuceno, A.L., Nakayama, T.J., Molinari, H.B., Basso, M.F., Harmon, F.G. 2017. Functional characterization of a putative glycine max ELF4 transgenic aradopsis and its role during flowering control. Frontiers in Plant Science. 8:618. doi:10.3389/fpls.201.00618.
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Accurate measurement of transgene copy number in crop plants using droplet digital PCR
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Collier, R.A., Dasgupta, K., Xing, Y., Hernandez, B., Shao, M., Rohozinski, D., Kovak, E., Lin, J.W., De Oliveira, M., Stover, E.W., Mc Cue, K.F., Harmon, F.G., Blechl, A.E., Thomson, J.G., Thilmony, R.L. 2017. Accurate measurement of transgene copy number in crop plants using droplet digital PCR. Plant Journal. 90:1014-1025. https://doi.org/10.1111/tpj.13517.
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The Arabidopsis sickle mutant exhibits altered circadian clock responses to cool tempatures and tempature-dependent alternative splicing
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Marshall, C., Tartaglio, V., Duarte, M., Harmon, F.G. 2016. The Arabidopsis sickle mutant exhibits altered circadian clock responses to cool tempatures and tempature-dependent alternative splicing. The Plant Cell. 28(10):2560-2575. doi:10.1105/tpc.16.00223.
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Temporal shift of circadian-mediated gene expression and carbon fixation contributes to biomass heterosis in maize hybrids
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Ko, D., Song, Q., Rohozinski, D., Taylor, S., Juenger, T.E., Harmon, F.G., Chen, Z. 2016. Temporal shift of circadian-mediated gene expression and carbon fixation contributes to biomass heterosis in maize hybrids. PLoS Genetics. 12(7):e1006197.
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Transcriptome-wide identification of reference genes for expression analysis of soybean responses to drought stress along the day
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Gomes, J.M., Rodrigues, F.A., Fuganti-Pagliarini, R., Nakayama, T.J., Reis, R., Farias, J.B., Harmon, F.G., Nepomuceno, A.L. 2015. Transcriptome-wide identification of reference genes for expression analysis of soybean responses to drought stress along the day. PLoS One. 10(9):e0139051.
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Daytime soybean transcriptome fluctuations during water deficit stress
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Rodrigues, F.A., Fuganti-Pagliarini, R., Gomes, J.M., Nakayama, T.J., Molinari, H.C., Lobo, F.P., Harmon, F.G., Nepomuceno, A.L. 2015. Daytime soybean transcriptome fluctuations during water deficit stress. BMC Genomics. 16:505. doi:10.1186/s12864-015-1731-x.
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Circadian clock genes universally control key agricultural traits
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Benedix, C., Marshall, C., Harmon, F.G. 2015. Circadian clock genes universally control key agricultural traits. Molecular Plant. 8(8):1135-1152. https://doi.org/10.1016/j.molp.2015.03.003.
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Setaria viridis floral-dip: A simple and rapid Agrobacterium-medicated transformation method
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Martins, P.K., Nakayama, T.J., Ribeiro, A.P., Brio Da Cunha, B.A., Nepomuceno, A., Harmon, F.G., Kobayashi, A.K., Molinari, H.C. 2015. Setaria viridis floral-dip: A simple and rapid Agrobacterium-medicated transformation method. Plant Biotechnology. 6:61-63.
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Gibberllin driven growth in elf3 mutants requires PIF4 and PIF5
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Harmon, F.G., Thines, B., Wu, A., Filo, J., Eliason, E. 2015. Gibberllin driven growth in elf3 mutants requires PIF4 and PIF5. Plant Signaling and Behavior. 10(3):e992707). doi: 10.4161/15592324.2014.992707.
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The time of day effects of warm temperature on flowering time involve PIF4 and PIF5
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Thines, B.C., Youngwon, Y., Duarte, M.I., Harmon, F.G. 2014. The time of day effects of warm temperature on flowering time involve PIF4 and PIF5. Journal of Experimental Botany. 65(4):1141-51. DOI: 10.1093/jxb/ert487.
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Diurnal oscillations of soybean circadian clock and drought responsive genes
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Gomes, J.M., Rodrigues, F.A., Fuganti-Pagliarini, R., Nakayama, T.J., Bendix, C., Celeya, R., Molinari, H.B., Nepomuceno, A.L., Harmon, F.G. 2014. Diurnal oscillations of soybean circadian clock and drought responsive genes. PLoS One. 9(1):e86402. doi:10.1371/journal.pone.0086402.
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The homeologous Zea mays gigantea genes: characterization of expression and novel mutant alleles
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Mendoza, J.H., Bendix, C., Meeley, R., Harmon, F.G. 2012. The homeologous Zea mays gigantea genes: characterization of expression and novel mutant alleles. Maydica. 57:260-265.
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The circadian clock-associated gene zea mays gigantea1 affects maize developmental transitions
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Bendix, C., Stanley, D., Mendoza, J.H., Meeley, R., Harmon, F.G. 2013. The circadian clock-associated gene zea mays gigantea1 affects maize developmental transitions. Plant Cell and Environment. 36(7):1379–1390.
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Ambient temperature response establishes ELF3 as a required component of the Arabidopsis core circadian clock
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Thines, B., Harmon, F.G. 2010. Ambient temperature response establishes ELF3 as a required component of the Arabidopsis core circadian clock. Proceedings of the National Academy of Sciences. 107(7):3257-3262.
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Four easy pieces: mechanisms underlying circadian regulation of growth and development
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Thines, B., Harmon, F.G. 2010. Four easy pieces: mechanisms underlying circadian regulation of growth and development. Current Opinion in Plant Biology. 14:1–7.
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Coordination of the maize transcriptome by a conserved circadian clock
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Khan, S., Rowe, S.C., Harmon, F.G. 2010. Coordination of the maize transcriptome by a conserved circadian clock. Biomed Central (BMC) Plant Biology. 10:126.
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Genome Sequencing and Analysis of the Model Grass Brachypodium Distachyon.
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Vogel, J.P., Garvin, D.F., Gu, Y.Q., Lazo, G.R., Anderson, O.D., Bragg, J.N., Chingcuanco, D.L., Weng, Y., Belknap, W.R., Thomson, J.G., Dardick, C.D., Baxter, I.R. 2010. Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature. 463:763-768.
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Genome Sequencing and Analysis of the Model grass Brachypodium distachyon
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Harmon, F.G., Rowe, S.C., Schnable, J. 2010. Genome Sequencing and Analysis of the Model grass Brachypodium distachyon. Nature. 463(7282)763-8.
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CUL1 Regulates TOC1 Protein Stability in the Arabidopsis Circadian Clock
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Harmon, F.G., Imaizumi, T., Gray, W.M. 2008. CUL1 Regulates TOC1 Protein Stability in the Arabidopsis Circadian Clock. Plant Journal. 55(4):568-579.
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PRR3 Is a Vascular Regulator of TOC1 Stability in the Arabidopsis Circadian Clock
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Para, A., Farre, E.M., Imaizumi, T., Pruneda-Paz, J., Harmon, F.G., Kay, S.A. 2007. PRR3 Is a Vascular Regulator of TOC1 Stability in the Arabidopsis Circadian Clock. The Plant Cell. Published on November 30, 2007; 10.1105/tpc.107.054775.
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A Constitutive Shade-Avoidance Mutant Implicates TIR-NBS-LRR Proteins in Arabidopsis Photomorphogenic Development
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Faigon-Soverna, A., Harmon, F.G., Storani, L., Karayekov, E., Staneloni, R.J., Gassmann, W., Mias, P., Casal, J.J., Kay, S.A., Yanovsky, M.J. 2006. A Constitutive Shade-Avoidance Mutant Implicates TIR-NBS-LRR Proteins in Arabidopsis Photomorphogenic Development. The Plant Cell 18(11):2919-2928.
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