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ARS Home » Plains Area » Kerrville, Texas » Knipling-Bushland U.S. Livestock Insects Research Laboratory » Veterinary Pest Genetics Research Unit » Research » Publications at this Location » Publication #429781
Research Project: Exploiting Veterinary Pest Genomics to Improve Animal Health

Location: Veterinary Pest Genetics Research Unit

Title: Whole genome assembly of the little house fly, Fannia canicularis in the National Center for Biotechnology Information

Author
item Luecke, David
item Bodine, Deanna
item Bendele, Kylie
item Lohmeyer, Kimberly
item Olafson, Pia
item Hickner, Paul
item Saelao, Perot

Submitted to: National Center for Biotechnology Information (NCBI)
Publication Type: Database / Dataset
Publication Acceptance Date: 8/12/2025
Publication Date: 9/25/2025
Citation: Luecke, D.M., Bodine, D.M., Bendele, K.G., Lohmeyer, K.H., Olafson, P.U., Hickner, P.V., Saelao, P. 2025. Whole genome assembly of the little house fly, Fannia canicularis in the National Center for Biotechnology Information. National Center for Biotechnology Information (NCBI). https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1272567.

Interpretive Summary: De novo genome assembly of a single Fannia canicularis individual. A single individual was converted into high molecular weight DNA to generate long read sequences on the PacBio sequencing platform. The data was generated to compare the genomes of known biting and other pest fly species. Genomic BioProject (accepted 6-5-25): PRJNA1272567 Genomic BioSample (accepted 6-5-25) LesserHouseFly_Male SAMN48916761 LesserHouseFly_Female SAMN48916762 Genomic SRA (accepted 6-6-25, released 6-6-25) SRA study SRP590213 SRR33849078 HiC Male SRR33849077 HiFi Female SRR33849076 HiFi Male Genome (accepted 8-12-25; released 9-26-25): JBQHYC000000000 SUBID BioProject BioSample Accession Organism --------------------------------------------------- SUB15379108 PRJNA1272567 SAMN48916761 JBQHYC000000000 Fannia canicularis PA18 Please cite the accession number XXXXXX000000000 like this: This Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession XXXXXX000000000. The version described in this paper is version XXXXXX010000000. The master records will be available from our various Entrez servers within a few days. The individual sequences are available from a hyperlink at the bottom of the WGS master record XXXXXX000000000. DOI/URL: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1272567

Technical Abstract: De novo genome assembly of a single Fannia canicularis individual. A single individual was converted into high molecular weight DNA to generate long read sequences on the PacBio sequencing platform. The data was generated to compare the genomes of known biting and other pest fly species. Genomic BioProject (accepted 6-5-25): PRJNA1272567 Genomic BioSample (accepted 6-5-25) LesserHouseFly_Male SAMN48916761 LesserHouseFly_Female SAMN48916762 Genomic SRA (accepted 6-6-25, released 6-6-25) SRA study SRP590213 SRR33849078 HiC Male SRR33849077 HiFi Female SRR33849076 HiFi Male Genome (accepted 8-12-25; released 9-26-25): JBQHYC000000000 SUBID BioProject BioSample Accession Organism --------------------------------------------------- SUB15379108 PRJNA1272567 SAMN48916761 JBQHYC000000000 Fannia canicularis PA18 Please cite the accession number XXXXXX000000000 like this: This Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession XXXXXX000000000. The version described in this paper is version XXXXXX010000000. The master records will be available from our various Entrez servers within a few days. The individual sequences are available from a hyperlink at the bottom of the WGS master record XXXXXX000000000. DOI/URL: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1272567