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ARS Home » Research » Research Project #434488

Research Project: Genetic Characterization and Diagnostic Detection of Emerging Vesicular Stomatitis Virus in North America

Location: Foreign Animal Disease Research

Project Number: 3022-32000-062-002-S
Project Type: Non-Assistance Cooperative Agreement

Start Date: Jun 1, 2018
End Date: May 31, 2023

Vesicular stomatitis (VS) is a viral disease of livestock which causes severe vesiculation and ulceration in infected animals. The causal agent, VS virus (VSV) is transmitted by insects and also by direct contact between animals. The disease, in cattle and pigs resembles foot-and-mouth disease, a devastating disease of livestock. Economic losses are due to direct production losses that it causes in infected herds and the imposition of quarantine restrictions that affect animal trade. Therefore, it is critical to characterize the viral strains causing outbreaks in North America. This research project seeks to generate knowledge on the epidemiological factors associated with VSV emergence and to conduct molecular characterization of the strains causing epidemics to contribute to the vesicular disease surveillance systems in the USA, Canada and Mexico. Specific objectives include: 1. Establish a research collaboration between Canadian Food Inspeciton Agency (CFIA) National Centre for Foreign Animal Disease (NCFAD) anf the USDA-ARS – Foreign Animal Disease Research Unit (FADRU) to work together with Mexico’s SENASICA Laboratory in Vesicular Stomatitis Virus (VSV) Characterization. 2. Identify VSV lineages circulating in Mexico and USA using genetic sequencing and phylogenetic analysis. 3. Determine the spatial and temporal distribution of VSV outbreaks in Mexico and the USA. 4. Improve diagnostic tests for the detection of VSV RNA and VSV serum antibodies in field samples. Amendment I: 5. Conduct pathogensis study using the recombinant VSV viruses generated by ARS, PIADC.

1. Viral strains: Viral strains occurring in Mexico and the USA from 2013 to 2019 from animals naturally infected by VSV will be considered as a part of this research. In Mexico regional veterinarians carry out investigations as a part of the vesicular disease surveillance program in Mexico and samples are sent to SENASICA-CPA laboratory, where different tests (Antigen ELISA, RT-PCR, viral isolation) will be conducted in order to rule out the presence of foot and mouth disease virus and other vesicular diseases. Viral samples identified as positive for VSV in Mexico are available in the viral repository of SENASICA-CPA, will be used for genomic characterization and comparison with samples obtained in the USA. 2. Viral genetic characterization: Viral genetic sequencing will be carried out using two approaches, partial genomic sequence using P region primers as previously described (9). Additional hypervariable regions of previously determined VSNJV P sequences from GenBank will be used in the phylogenetic analysis that will be performed by Maximum likelihood optimality criterion. Viral strains of particular interest will be full-length sequenced as previously described (10). Sequences will be analyzed utilizing CLC Work Bench (Qiagen Corp) in close collaboration between ARS – Plum Island, CFIA-Canada and Senasica-CPA personnel. 3. Improve diagnostic tests for the detection of VSV and VSV antibodies in field samples: In collaboration with the Canadian Food Inspeciton Agency (CFIA) National Centre for Foreign Animal Disease (NCFAD) field samples obtained through this study will be tested by existing real-time PCR and ELISA techniques. Sample exchanges authorized by SENASICA, will be done through a Material Transfer Research Agreement between SENASICA, ARS and CFIA. Amendment I 4. A pathogenesis study in pigs will be conducted to test virulence of a VS-NJV mutant produced by ARS, PIADC using a VSNJV infectious clone. The study will include e 8 pigs, 4 inoculated and 4 contact pigs with an observation period of 14-21 days.