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United States Department of Agriculture

Agricultural Research Service

Research Project: Using Genetic Approaches to Reduce Crop Losses in Rice Due to Biotic and Abiotic Stress

Location: Dale Bumpers National Rice Research Center

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Deep phosphorus fertiliser placement and reduced irrigation methods for rice (Oryza sativa L.) combine to knock-out competition from its nemesis, barnyard grass (Echinochloa crus-galli (L.) P.Beauv) - (Peer Reviewed Journal)
(07-Apr-15)
Characterization of rice blast resistance genes in rice germplasm with monogenic lines and pathogenicity assays     Reprint Icon - (Peer Reviewed Journal)
Wang, J., Correll, J.C., Jia, Y. 2015. Characterization of rice blast resistance genes in rice germplasm with monogenic lines and pathogenicity assays. Crop Protection. 72:132-138.
QTLs analysis for resistance to blast disease in US weedy rice - (Peer Reviewed Journal)
Liu, Y., Qi, X., Gealy, D.R., Olsen, K.M., Caicedo, A.L., Jia, Y. 2015. QTLs analysis for resistance to blast disease in US weedy rice. Molecular Plant-Microbe Interactions. p. 1-36. doi.org/10.1094/MPMI-12-14-0386-R.
Outcrossing Potential between U.S. Blackhull Red Rice (Oryza sativa) and Indica Rice (Oryza sativa) Cultivars - (Peer Reviewed Journal)
(12-Feb-15)
Growth characteristics of a weed-suppressive indica x non-suppressive tropical japonica rice mapping population - (Proceedings)
Gealy, D.R., Jia, Y., Pinson, S.R. 2015. Growth characteristics of a weed-suppressive indica x non-suppressive tropical japonica rice mapping population. Weed Science Society of America Meeting Abstracts. 55(263). Available: http://wssaabstracts.com/public/30/proceedings.html
Introgression of resistance-conferring ALS mutations in herbicide-resistant weedy rice - (Proceedings)
(24-Jan-15)
The secrets of cold tolerance at the seedling stage and heading in rice as revealed by association mapping - (Abstract Only)
Eizenga G.C. Shakiba E., Jodari F., Duke S., Korniviel P., Jackson A., Mezey J., McCouch S. 2014. The secrets of cold tolerance at the seedling stage and heading in rice as revealed by association mapping. International Plant & Animal Genome XXIII. San Diego, CA. 10-14 Jan. 2015. Available at: https://pag.confex.com/pag/xxiii/webprogram/Paper14223.html.
Seasonal methane and nitrous oxide emissions of several rice cultivars in direct-seeded systems - (Peer Reviewed Journal)
Simmonds, M.B., Anders, M., Adviento-Borbe, M.A., Van Kessel, C., Mcclung, A.M., Linquist, B.A. 2015. Seasonal methane and nitrous oxide emissions of several rice cultivars in direct-seeded systems. Journal of Environmental Quality. 44:103-114.
Characterization of resistance genes to rice blast fungus Magnaporthe oryzae in a “Green Revolution” rice variety     Reprint Icon - (Peer Reviewed Journal)
Liu, Y., Qi, X., Young, N.D., Olsen, K.M., Caicedo, A.L., Jia, Y. 2015. Characterization of resistance genes to rice blast fungus magnaporthe oryzae in a “Green Revolution” rice variety. Molecular Breeding. 35:52. DOI 10.1007/s11032-015-0256-y.
Statistical inference of selection and divergence of rice blast resistance gene Pi-ta     Reprint Icon - (Peer Reviewed Journal)
Amei, A., Lee, S., Mysore, K.S., Jia, Y. 2014. Statistical inference of selection and divergence of rice blast resistance gene Pi-ta. Genes, Genomes, Genetics. 4:2425-2432.
Organic rice production: minimizing exposure to grain arsenic - (Abstract Only)
McClung, A.M., Gerads, R., Chaney, R.L., Dou, F., Zhou, X., Duke, S.E. November 2-5, 2014. Organic rice production: minimizing exposure to grain arsenic. ASA-CSSA-SSSA Annual Meeting Abstracts, Long Beach, CA.
Genetic architecture of cold tolerance in rice at the seedling stage and heading determined through genome-wide association studies - (Abstract Only)
Shakiba E, Jodari F., Duke S.E., Korniliev P., Jackson A.K., Mezey J.G., McCouch S.R., Eizenga G.C. 2014. Genetic architecture of cold tolerance in rice at the seedling stage and heading determined through genome-wide association studies. In: Abstracts, Annual Meeting, ASA-CSSA-SSSA, Long Beach, CA 2–5 Nov. 2014. Available at: https://scisoc.confex.com/scisoc/2014am/webprogram/Paper86017.html. [CDROM].
Purification, storage, and pathogenicity assay of rice false smut fungus under controlled environmental conditions - (Abstract Only)
Jia, Y., El-Shafey, R., Zhang, Z. 2014. Purification, storage, and pathogenicity assay of rice false smut fungus under controlled environmental conditions. American Phytopathological Society Annual Meeting. Published on-line. p 53.
The impact of herbicide-resistant rice technology on phenotypic diversity and population structure of United States weedy rice     Reprint Icon - (Peer Reviewed Journal)
Burgos, N.R., Singh, V., Tseng, T., Black, H.L., Young, N.D., Huang, Z., Hyma, K.E., Gealy, D.R., Caicedo, A.L. 2014. The impact of herbicide-resistant rice technology on phenotypic diversity and population structure of United States weedy rice. Plant Physiology. 166:1208-1220.
Identification of major blast resistance genes in the southern US - (Abstract Only)
Wang, X., Wamishe, Y., Bianco, T.A., Lin, M.J., Valent, B., Jia, Y. 2014. Identification of major blast resistance genes in the southern US. American Phytopathological Society Annual Meeting, August 9-13, 2014, Minneapolis, MN. O68.
Insights into molecular mechanism of blast resistance in weedy rice - (Abstract Only)
Liu, Y., Jia, Y., Qi, X., Olsen, K.M., Caicedo, A.L., Gealy, D.R. 2014. Insights into molecular mechanism of blast resistance in weedy rice. Proc. APS-CPS Joint Meet., Minneapolis, MN, pp.67-70. August 9-13, 2014.
Characterizing virulence phenotypes among U.S. isolates of Magnaporthe oryzae using IRRI NILs, US germplasm, and NERICA lines - (Abstract Only)
Rotich, F., Feng, C., Jia, Y., Groth, D., Correll, J. 2014. Characterizing virulence phenotypes among U.S. isolates of Magnaporthe oryzae using IRRI NILs, US germplasm, and NERICA lines. In BR Wells Studies- series 609 2013. Edited by Norman, RJ., Molderhauer, KAK, University of Arkansas. Pages 109-115.
Sequence variation and recognition specificity of the avirulence gene AvrPiz-t in Magnaporthe oryzae field populations     Reprint Icon - (Peer Reviewed Journal)
Chen, C., Chen, M., Hu, J., Zhang, W., Zhong, Z., Jia, Y., Allaux, L., Fournier, E., Tharreau, D., Wang, G., Wang, Z., Shen, W., Lu, G., Wang, B., Mitchell, T.K. 2014. Sequence variation and recognition specificity of the avirulence gene AvrPiz-t in Magnaporthe oryzae field populations. Fungal Genomics and Biology. 4:113. doi:10.4172/2165-8056.1000113.
Registration of a rice gene mapping population of Lemont X Jasmine 85 recombinant inbred lines     Reprint Icon - (Peer Reviewed Journal)
Jia, Y., Liu, G., Jia, M.H., McClung, A.M. 2014. Registration of a rice gene mapping population of Lemont X Jasmine 85 recombinant inbred lines. Journal of Plant Registrations. 9:128-132.
The evolution of flowering strategies in US weedy rice     Reprint Icon - (Peer Reviewed Journal)
Thurber, C.S., Reagon, M., Olsen, K.M., Jia, Y., Caicedo, A.L. 2014. The evolution of flowering strategies in US weedy rice. American Journal of Botany. 101(10):1737-1747. doi:10.3732/ajb.1400154.
The evolution of flowering strategies in US weedy rice - (Peer Reviewed Journal)
(21-Jul-14)
An expedited method to isolate DNA for PCR from Magnaporthe oryzae stored on filter paper     Reprint Icon - (Peer Reviewed Journal)
Jia, Y., Wamishe, Y.A., Zhou, B. 2014. An expedited method to isolate DNA for PCR from Magnaporthe oryzae stored on filter paper. The Crop Journal. 2(5):267-271.
Molecular detection of Xanthomonas oryzae pv. oryzae, Xanthomonas oryzae pv. oryzicola, and Burkholderia glumae in infected rice seeds and leaves     Reprint Icon - (Peer Reviewed Journal)
Lu, W., Pan, L., Zhao, H., Jia, Y., Wang, Y., Yu, X., Wang, X. 2014. Molecular detection of Xanthomonas oryzae pv. oryzae, Xanthomonas oryzae pv. oryzicola, and Burkholderia glumae in infected rice seeds and leaves. The Crop Journal. 2:398-406. doi: 10.1016/j.cj.2014.06.005.
Development of practical diagnostic methods for monitoring rice bacterial panicle blight disease and evaluation of rice germplasm for resistance - (Experiment Station)
Wamishe, Y., Jia, Y., Kelsey, S., Belmar, S., Rasheed, M.D. 2014. Development of practical diagnostic methods for monitoring rice bacterial panicle blight disease and evaluation of rice germplasm for resistance. Arkansas Agricultural Experiment Station, B.R. Wells Rice Research Studies-20012, eds. Norman, R.J., and Moldenhauer, K., series 609:103-108. (http://arkansasagnews.uark.edu/609-13.pdf).
Natural variation of rice blast resistance gene Pi-d2     Reprint Icon - (Peer Reviewed Journal)
Li, J., Sun, Y., Liu, H., Wang, Y., Jia, Y., Xu, M. 2015. Natural variation of rice blast resistance gene Pi-d2. Genetics and Molecular Research. 14(1):1235-1249. doi.org/10.4238/2015.February.13.2.
Identification of candidate genes associated with positive and negative heterosis in rice     Reprint Icon - (Peer Reviewed Journal)
Venu, R.C., Ma, J., Jia, Y., Liu, G., Jia, M.H., Nobuta, K., Sreerekha, M.V., Moldenhauer, K., McClung, A.M., Meyers, B.C., Wang, G. 2014. Identification of candidate genes associated with positive and negative heterosis in rice. PLoS One. 9(4):e95178.
Root distribution and interactions between allelopathic rice and c4 grass weed species as determined by 13c isotope discrimination analysis - (Abstract Only)
Gealy, D.R., Moldenhauer, K.A., Duke, S.E. 2014. Root distribution and interactions between allelopathic rice and c4 grass weed species as determined by 13c isotope discrimination analysis . In: Proceedings of the 7th World Congress on Allelopathy. Vigo, Spain. International Allelopathy Society. International Allelopathy Congress. p. 224.
Exploring optimization of weed suppression, yield, and biotic stress tolerance in an allelopathic X non-allelopathic rice mapping population - (Abstract Only)
Gealy, D.R., Jia, Y., Pinson, S.R. 2014. Exploring optimization of weed suppression, yield, and biotic stress tolerance in an allelopathic X non-allelopathic rice mapping population. In: Proceedings of the 7th World Congress on Allelopathy. Vigo, Spain. International Allelopathy Society. International Allelopathy Congress. p. 224.
Characterization of rice blast resistance gene Pi61(t) in rice germplasm     Reprint Icon - (Peer Reviewed Journal)
Ma, J., Jia, M.H., Jia, Y. 2014. Characterization of rice blast resistance gene Pi61(t) in rice germplasm. Plant Disease. 98(9):1200-1204.
Identification of candidate genes associated with heterosis in rice - (Proceedings)
Venu, R.C., Ma, J., Jia, Y., Liu, G., Jia, M.H., Nobuta, K., Sreerekha, M.V., Moldenhauer, K., McClung, A.M., Meyers, B.C., Wang, G. 2014. Identification of candidate genes associated with heterosis in rice. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.53. Feb 18-21, 2014. CDROM.
Multistate evaluation of Brassica cover crop, biocontrol agent, and fungicide for integrated management of sheath blight - (Proceedings)
Zhou, X., Liu, G., Anders, M.M., Maxwell, H., Allen, T., Kloepper, J.W., Reddy, M.S., Jia, Y., Lu, S., Jo, Y., Way, M. 2014. Multistate evaluation of Brassica cover crop, biocontrol agent, and fungicide for integrated management of sheath blight. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.79. Feb 18-21, 2014. CDROM.
Disease reactions of IRRI near-isogenic rice lines to U.S. isolates of Magnaporthe oryzae - (Proceedings)
Feng, C., Rotich, F., Jia, Y., Correll, J. 2014. Disease reactions of IRRI near-isogenic rice lines to U.S. isolates of Magnaporthe oryzae. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.89. Feb 18-21, 2014. CDROM.
Promises and challenges of genomics for rice pathology - (Proceedings)
Jia, Y., Lin, M.J., Bianco, T.A. 2014. Promises and challenges of genomics for rice pathology. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.94. Feb 18-21, 2014. CDROM.
Elucidation of molecular dynamics of invasive species of rice - (Proceedings)
Yan, L., Qin, X., Vigueira, C., Jia, M.H., Jia, Y., Gealy, D.R., Olsen, K., Caicedo, A., Burgos, N. 2014. Elucidation of molecular dynamics of invasive species of rice. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.94. Feb 18-21, 2014. CDROM.
Development of a pathology toolbox for genetic and breeding for resistance to rice sheath blight disease - (Proceedings)
Jia, Y. 2014. Development of a pathology toolbox for genetic and breeding for resistance to rice sheath blight disease. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.86. Feb 18-21, 2014. CDROM.
Implication of co-evolutionary dynamics for genetic resistance to rice blast fungus - (Proceedings)
Jia, Y. 2014. Implication of co-evolutionary dynamics for genetic resistance to rice blast fungus. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.39. Feb 18-21, 2014. CDROM.
Effect of intermittent irrigation on rice productivity and weed suppression - (Abstract Only)
Gealy, D.R., Anders, M.M. 2014. Effect of intermittent irrigation on rice productivity and weed suppression. Proceedings of Southern Weed Science Society. 67:205.
Effectiveness and durability of the rice Pi-ta gene in Yunnan province of China     Reprint Icon - (Peer Reviewed Journal)
Li, J., Lu, L., Jia, Y., Li, C. 2014. Effectiveness and durability of the rice Pi-ta gene in Yunnan province of China. Phytopathology. 104(7):762-768.
Impact of organic production management on variety yield and grain arsenic accumulation - (Proceedings)
McClung, A.M., Duke, S., and Chaney, R.L. 2014. Impact of organic production management on variety yield and grain arsenic accumulation. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p. 120. Feb. 18-21, 2014. CDROM.
A genetic approach to producing rice using less irrigation water - (Abstract Only)
Teaster, N.D., Henry, C.G., Anders, M.M. and McClung, A.M. 2014. A genetic approach to producing rice using less irrigation water. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p. 70. Feb. 18-21, 2014. CDROM.
Cover crop, soil amendments, and variety effects on organic rice production in Texas - (Proceedings)
Dou, F., Zhou, X., McClung, A., Storlien, J., Lang, Y., Torbert, A., Hons, F., Wards, B., Kresovich, S., and Wight, J.. 2014. Cover crop, soil amendments, and variety effects on organic rice production in Texas. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p. 141. Feb. 18-21, 2014. CDROM.
Rice blast research: improving our arsenal and using it - (Proceedings)
McClung, A.M. 2014. Rice blast research: improving our arsenal and using it. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.41. Feb. 18-21, 2014. CDROM.
Induction of avirulence by AVR-Pita1 in virulent U.S. field isolates of Magnaporthe oryzae - (Peer Reviewed Journal)
Dai, Y., Winston, E., Correll, J.C., Jia, Y. 2014. Induction of avirulence by AVR-Pita1 in virulent U.S. field isolates of Magnaporthe oryzae. The Crop Journal. 2(1):1-9.
Using the rice diversity panel 1 to develop novel germplasm for breeding - (Abstract Only)
Eizenga, G.C., Mcclung, A.M., Wright, M.H., Greenberg, A.J., Cobb, J.N., Jung, J.K., Clark, R.T., Singh, N., Agosto-Perez, F.J., Declerck, G.A., Shakiba, E., Anh, S., Kochian, L.V., Mezey, J.G., Mccouch, S.R. 2013. Using the rice diversity panel 1 to develop novel germplasm for breeding. International Rice Genetics Symposium. 7th International Rice Genetics Symposium Program and Abstract Book. pg 161-162.
Greenhouse gas emissions, irrigation water use, and arsenic concentrations; a common thread in rice water management - (Proceedings)
Anders, M.M., Linquist, B.A., Adviento-Borbe, M.A., McClung, A.M., van Kessel, C., Henry, C., Chaney, R. L., Kerr, S., Hendrix, D. 2014. Greenhouse gas emissions, irrigation water use, and arsenic concentrations; a common thread in rice water management. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.115-116. Feb. 18-21, 2014. CDROM.
Last Modified: 5/22/2015
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