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United States Department of Agriculture

Agricultural Research Service

PHILIPP W. SIMON

Research Leader


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Phylogenomics of the carrot genus (Daucus, Apiaceae) - (Peer Reviewed Journal) - (02-Jun-14)
Integrated molecular and morphological studies of Daucus - (Abstract Only) - (15-Apr-14)
Incidence and severity of cavity spot of carrot as affected by pigmentation, temperature, and rainfall Reprint Icon - (Peer Reviewed Journal)
Saude, C., Simon, P.W., Mcdonald, M.R. 2014. Incidence and severity of cavity spot of carrot as affected by pigmentation, temperature, and rainfall . Plant Disease. 98(7):929-936.
First report of bacterial blight of carrot in Indiana caused by Xanthomonas hortorum pv. carotae Reprint Icon - (Peer Reviewed Journal)
Du Toit, L.J., Derie, M.L., Christianson, C.E., Hoagland, L., Simon, P.W. 2014. First report of bacterial blight of carrot in Indiana caused by Xanthomonas hortorum pv. carotae . Plant Disease. 98(5):685.
Maize genotype and food matrix affect the provitamin A carotenoid bioefficacy from staple and carrot-fortified feeds in Mongolian gerbils (Meriones unguiculatus) Reprint Icon - (Peer Reviewed Journal)
Schmaelzle, S., Gannon, B., Crawford, S., Arscott, S.A., Goltz, S., Palacios-Rojas, N., Pixley, K.V., Simon, P.W., Tanumihardjo, S.A. 2014. Maize genotype and food matrix affect the provitamin A carotenoid bioefficacy from staple and carrot-fortified feeds in Mongolian gerbils (Meriones unguiculatus). Journal of Agricultural and Food Chemistry. 62(1):136-143.
Mechanisms of decreasing dysploidy in Cucumis - (Abstract Only)
Yang, L., Koo, D., Li, D., Jiang, J., Luan, F., Renner, S.S., Henaff, E., Sanseverino, W., Garcia-Mas, J., Casacuberta, J., Senalik, D.A., Simon, P.W., Chen, J., Weng, Y. 2014. Mechanisms of decreasing dysploidy in Cucumis [abstract]. Plant and Animal Genome Conference. Paper No. W233.
Testing the utility of matK and ITS DNA regions for discrimination of Allium species Reprint Icon - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2014. Testing the utility of matK and ITS DNA regions for discrimination of Allium species. Turkish Journal of Botany. 38(2):203-212.
Inheritance and mapping of Mj-2, a new source of root-knot nematode (Meloidogyne javanica) resistance in carrot Reprint Icon - (Peer Reviewed Journal)
Ali, A., Mathews, W.C., Cavagnaro, P.F., Iorizzo, M., Roberts, P.A., Simon, P.W. 2014. Inheritance and mapping of Mj-2, a new source of root-knot nematode (Meloidogyne javanica) resistance in carrot. Journal of Heredity. 105(2):288-291.
Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers Reprint Icon - (Peer Reviewed Journal)
Grzebelus, D., Iorizzo, M., Senalik, D.A., Ellison, S., Cavagnaro, P., Macko-Podgorni, A., Heller-Uszynska, K., Kilian, A., Nothnagel, T., Allender, C., Simon, P.W., Baranski, R. 2014. Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers . Molecular Breeding. 33(3):625-637.
Formation of norisoprenoid flavor compounds in carrot (Daucus carota L.) roots: Characterization of a cyclic-specific carotenoid cleavage dioxygenase 1 gene Reprint Icon - (Peer Reviewed Journal)
Yahyaa, M., Bar, E., Dubey, N.K., Meir, A., Davidovich-Rikanati, J., Hirschberg, J., Ali, R., Tholl, D., Simon, P.W., Tadmor, Y., Lewinsohn, E., Ibdah, M. 2013. Formation of norisoprenoid flavor compounds in carrot (Daucus carota L.) roots: Characterization of a cyclic-specific carotenoid cleavage dioxygenase 1 gene. Journal of Agricultural and Food Chemistry. 61(50):12233-12252.
Fruit morphological descriptors as a tool for discrimination of Daucus L. germplasm Reprint Icon - (Peer Reviewed Journal)
Mezghani, N., Zaouali, I., Bel Amri, W., Rouz, S., Simon, P.W., Hannachi, C., Ghrabi, Z., Neffati, M., Bouzbida, B., Spooner, D.M. 2014. Fruit morphological descriptors as a tool for discrimination of Daucus L. germplasm. Genetic Resources and Crop Evolution. 61(2):499-510.
Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy in Cucumis Reprint Icon - (Peer Reviewed Journal)
Yang, L., Koo, D., Li, D., Zhang, T., Jiang, J., Luan, F., Renner, S.S., Henaff, E., Sanseverino, W., Garcia-Mas, J., Senalik, D.A., Simon, P.W., Weng, Y., et al. 2014. Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy in Cucumis. Plant Journal. 77(1):16-30.
Transcript abundance of phytoene synthase 1 and phytoene synthase 2 is associated with natural variation of storage root carotenoid pigmentation in carrot Reprint Icon - (Peer Reviewed Journal)
Bowman, M.J., Willis, D.K., Simon, P.W. 2014. Transcript abundance of phytoene synthase 1 and phytoene synthase 2 is associated with natural variation of storage root carotenoid pigmentation in carrot. Journal of the American Society for Horticultural Science. 139(1):63-68.
Daucus - (Monograph) - (05-Aug-13)
DcSto: carrot Stowaway-like elements are abundant, diverse, and polymorphic Reprint Icon - (Peer Reviewed Journal)
Macko-Podgorni, A., Nowicka, A., Grzebelus, E., Simon, P.W., Grzebelus, D. 2013. DcSto: carrot Stowaway-like elements are abundant, diverse, and polymorphic. Genetica. 141(4-6):255-267.
Multiple nuclear ortholog next generation sequencing phylogeny of Daucus - (Abstract Only)
Arbizu, C., Ruess, H.M., Senalik, D.A., Simon, P.W., Spooner, D.M. 2013. Multiple nuclear ortholog next generation sequencing phylogeny of Daucus [abstract]. 36th International Carrot Conference. Paper. No. P16.
Taxonomy, distribution and germplasm collection needs of Daucus - (Abstract Only)
Spooner, D.M., Simon, P.W. 2013. Taxonomy, distribution and germplasm collection needs of Daucus [abstract]. International Carrot Conference. Paper No. 16.
Multiple nuclear ortholog next generation sequencing phylogeny of Daucus - (Abstract Only)
Arbizu, C., Ruess, H.M., Senalik, D.A., Simon, P.W., Spooner, D.M. 2013. Multiple nuclear ortholog next generation sequencing phylogeny of Daucus [abstract]. International Carrot Conference. Paper No. 17.
Reassessment of practical species identifications of the USDA Daucus carota germplasm collection: Morphological data - (Abstract Only)
Spooner, D.M., Widriechner, M.P., Reitsma, K.R., Palmquist, D.E., Simon, P.W. 2013. Reassessment of practical species identifications of the USDA Daucus carota germplasm collection: Morphological data [abstract]. International Carrot Conference. Paper No. 505.
Reassessment of practical subspecies identifications of the USDA Daucus carota L. germplasm collection: Morphological data Reprint Icon - (Peer Reviewed Journal)
Spooner, D.M., Widrlechner, M.P., Reitsma, K., Palmquist, D.E., Rouz, S., Ghrabi-Gammar, Z., Neffati, M., Bouzbida, B., Ouabbou, H., El Koudrim, M., Simon, P.W. 2014. Reassessment of practical subspecies identifications of the USDA Daucus carota L. germplasm collection: Morphological data. Crop Science. 54(2):706-718.
Location, cropping system, and genetic background influence carrot performance including top height and flavor in the CIOA (Carrot Improvement for Organic Agriculture) Project - (Abstract Only)
Simon, P.W., Navazio, J.P., Colley, M., Hoagland, L., Roberts, P.A., Du Toit, L., Waters, T., Silva, E., Colquhoun, J., Nunez, J., Mccluskey, C. 2013. Location, cropping system, and genetic background influence carrot performance including top height and flavor in the CIOA (Carrot Improvement for Organic Agriculture) Project [abstract]. American Society for Horticultural Science. Paper No. 079.
Expression and mapping of anthocyanin biosynthesis genes in carrot Reprint Icon - (Peer Reviewed Journal)
Yildiz, M., Willis, D.K., Cavagnaro, P.F., Iorizzo, M., Abak, K., Simon, P.W. 2013. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 126(7):1689-1702.
Multiple nuclear ortholog next generation sequencing phylogeny of Daucus - (Abstract Only)
Arbizu, C., Ruess, H.M., Senalik, D.A., Simon, P.W., Spooner, D.M. 2013. Multiple nuclear ortholog next generation sequencing phylogeny of Daucus [abstract]. Botanical Society of America Abstracts. Paper No. 895.
Genetic structure and domestication of carrot (Daucus carota subsp. sativus L.) (Apiaceae) - (Abstract Only)
Iorizzo, M., Senalik, D.A., Ellison, S.L., Grzebelus, D., Cavagnaro, P.F., Allender, C., Brunet, J., Spooner, D.M., Van Deynze, A., Simon, P.W. 2013. Genetic structure and domestication of carrot (Daucus carota subsp. sativus L.) (Apiaceae) [abstract]. Botanical Society of America Abstracts. Paper No. 654.
Genetic structure and domestication of carrot (Daucus carota subsp. sativus)(Apiaceae) Reprint Icon - (Peer Reviewed Journal)
Iorizzo, M., Senalik, D.A., Ellison, S., Grzebelus, D., Cavagnaro, P., Allender, C., Brunet, J., Spooner, D.M., Van Deynze, A., Simon, P.W. 2013. Genetic structure and domestication of carrot (Daucus carota subsp. sativus) (Apiaceae). American Journal of Botany. 100(5):930-938.
Molecular phylogeny of Daucus (Apiaceae) Reprint Icon - (Peer Reviewed Journal)
Spooner, D.M., Srivistav, M., Rojas, P., Simon, P.W. 2013. Molecular phylogeny of Daucus (Apiaceae). Systematic Botany. 38(3):850-857.
Daucus for the flora of North America - (Monograph) - (15-Jan-13)
Quantification of the relative abundance of plastome to nuclear genome in leaf and root tissues of carrot (Daucus carota L.) using quantitative PCR Reprint Icon - (Peer Reviewed Journal)
Bowman, M.J., Simon, P.W. 2013. Quantification of the relative abundance of plastome to nuclear genome in leaf and root tissues of carrot (Daucus carota L.) using quantitative PCR. Plant Molecular Biology Reporter. 31(4):1040-1047.
Against the traffic: The first evidence for mitochondrial DNA transfer into the plastid genome Reprint Icon - (Peer Reviewed Journal)
Iorizzo, M., Grzebelus, D., Senalik, D.A., Szklarczyk, M., Spooner, D.M., Simon, P.W. 2012. Against the traffic: The first evidence for mitochondrial DNA transfer into the plastid genome. Mobile Genetic Elements. 2(6):261-266.
Genome-wide association of the domestication syndrome in carrot (Daucus carota L.) - (Abstract Only)
Ellison, S.L., Iorizzo, M., Senalik, D.A., Simon, P.W. 2013. Genome-wide association of the domestication syndrome in carrot (Daucus carota L.) [abstract]. Plant and Animal Genome Conference. Paper No. P0698.
Development of a high-throughput SNP resource to advance genomic, genetic and breeding research in carrot (Daucus carota L.) - (Abstract Only)
Iorizzo, M., Senalik, D.A., Ellison, S.L., Grzebelus, D., Cavagnaro, P., Spooner, D.M., Van Deynze, A., Simon, P.W. 2013. Development of a high-throughput SNP resource to advance genomic, genetic and breeding research in carrot (Daucus carota L.) [abstract]. Plant and Animal Genome Conference. Paper No. P0762.
Diversity Arrays Technology (DArT) platform for genotyping and mapping in carrot (Daucus carota L.) - (Abstract Only)
Grzebelus, D., Baranski, R., Iorizzo, M., Senalik, D.A., Ellison, S.L., Cavagnaro, P., Macko-Podgorni, A., Heller-Uszynska, K., Kilian, A., Simon, P.W. 2013. Diversity Arrays Technology (DArT) platform for genotyping and mapping in carrot (Daucus carota L.) [abstract]. Plant and Animal Genome Conference. Paper No. P0697.
Breeding and genomics of vegetable crops for climate-resilience traits - (Book / Chapter) - (20-Oct-12)
Molecular mapping of vernalization requirement and fertility restoration genes in carrot Reprint Icon - (Peer Reviewed Journal)
Alessandro, M.S., Galamarini, C.R., Iorizzo, M., Simon, P.W. 2013. Molecular mapping of vernalization requirement and fertility restoration genes in carrot. Theoretical and Applied Genetics. 126(2):415-423.
De novo assembly and characterization of the carrot mitochondrial genome using next generation sequencing data from whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome Reprint Icon - (Peer Reviewed Journal)
Simon, P.W., Iorizzo, M., Senalik, D.A., Szklarczyk, M., Grzebelus, D., Spooner, D.M. 2012. De novo assembly and characterization of the carrot mitochondrial genome using next generation sequencing data from whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome. Biomed Central (BMC) Plant Biology. 12:1-17.
Effect of UV-B light and genotype on antioxidant enhancement of carrot slices - (Abstract Only) - (09-Feb-12)
Genetic diversity of carrot (Daucus carota L.) cultivars revealed by analysis of SSR loci - (Peer Reviewed Journal)
Baransi, R., Maksylewicz-Kaul, A., Nothnagel, T., Cavagnaro, P., Simon, P.W., Grzebelus, D. 2011. Genetic diversity of carrot (Daucus carota L.) cultivars revealed by analysis of SSR loci. Genetic Resources and Crop Evolution. 59(2):163-170.
In silico analysis of 454 data yields the complete American cranberry (Vaccinium macrocarpon Ait.) plastid genome - (Abstract Only)
Zalapa, J.E., Steffan, S.A., Simon, P.W., Senalik, D.A., Polashock, J.J., Vorsa, N., Fajardo, D., Harbut, R., Zhu, H., Mccown, B., Zeldin, E. 2012. In silico analysis of 454 data yields the complete American cranberry (Vaccinium macrocarpon Ait.) plastid genome [abstract]. Plant and Animal Genome Conference. Paper No. P0047.
De novo assembly of the carrot mitochondrial genome - (Abstract Only)
Iorizzo, M., Simon, P.W., Senalik, D.A., Szklarczyk, M., Grzeblus, D. 2012. De novo assembly of the carrot mitochondrial genome [abstract]. Plant and Animal Genome Conference. Paper No. P0040.
Progress towards the complete American cranberry (Vaccinium macrocarpon Ait.) plastid genome - (Abstract Only)
Zalapa, J.E., Steffan, S.A., Simon, P.W., Senalik, D.A., Polashock, J.J., Vorsa, N., Diego, F., Harbut, R., Zhu, H. 2011. Progress towards the complete American cranberry (Vaccinium macrocarpon Ait.) plastid genome [abstract]. Plant Sciences Symposium.
Using next generation sequencing approaches for the isolation of simple sequence repeats (SSF) in the plant sciences - (Peer Reviewed Journal)
Zalapa, J.E., Cuevas, H.E., Steffan, S.A., Simon, P.W., Senalik, D.A., Zhu, H., Mccown, B., Zeldin, E., Harbut, R. 2012. Using next generation sequencing approaches for the isolation of simple sequence repeats (SSR) in the plant sciences. American Journal of Botany. 99(2):193-208.
Daucus - (Book / Chapter)
Grzebelus, D., Baranski, R., Spalik, K., Allender, C., Simon, P.W. 2011. Daucus. In: Kole, C., editor, Wild Crop Relatives: Genomic and Breeding Resources. New York, NY:Springer. p. 91-113.
Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.) - (Peer Reviewed Journal)
Zalapa, J.E., Simon, P.W., Hummer, K.E., Bassil, N.V., Senalik, D.A., Zhu, H., Mccown, B.H., Zeldin, E., Speers, J., Hyman, J. 2012. Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.). Theoretical and Applied Genetics. 124(1):87-96.
Allocation of experimental resources to minimize the variance of genotype mean chip color and tuber composition - (Peer Reviewed Journal)
Mccann, L.C., Bethke, P.C., Casler, M.D., Simon, P.W. 2011. Allocation of experimental resources to minimize the variance of genotype mean chip color and tuber composition. Crop Science. 52(4):1475-1481.
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity - (Peer Reviewed Journal)
Iorizzo, M., Senalik, D.A., Grzebelus, D., Bowman, M., Cavagnaro, P.F., Matvienko, M., Ashrafi, H., Van Deynze, A., Simon, P.W. 2011. De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity. Biomed Central (BMC) Genomics. 12:389.
Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae - (Peer Reviewed Journal)
Cavagnaro, P.F., Chung, S., Manin, S., Yildiz, M., Ali, A., Alessandro, M.S., Iorizzo, M., Senalik, D.A., Simon, P.W. 2011. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae. Biomed Central (BMC) Genomics. 12:386.
Inheritance and mapping of the ore gene controlling the quantity of ß-carotene in cucumber (Cucumis sativus L.) endocarp - (Peer Reviewed Journal)
Bo, K., Song, H., Shen, J., Qian, C., Staub, J.E., Simon, P.W., Lou, Q., Chen, J. 2011. Inheritance and mapping of the ore gene controlling the quantity of ß-carotene in cucumber (Cucumis sativus L.) endocarp. Molecular Breeding. 30(1):335-344.
Usda, ARS Eom 402-10 High B-Carotene Cucumber - (Germplasm Registration)
Staub, J.E., Simon, P.W., Cuevas, H.E. 2011. USDA, ARS EOM 402-10 high B-carotene cucumber. HortScience. 46:1426-1427.
Comparative FISH mapping of Daucus species (Apiaceae family) - (Peer Reviewed Journal)
Iovene, M., Cavagnaro, P.F., Simon, P.W., Senalik, D.A., Buell, C.R., Jiang, J. 2011. Comparative FISH mapping of Daucus species (Apiaceae family). Chromosome Research. 19:493-506.
Molecular markers: are they really useful to detect genetic variability in local garlic collections? - (Peer Reviewed Journal)
Garcia Lampasona, S., Burba, J.L., Simon, P.W. 2010. Molecular markers: are they really useful to detect genetic variability in local garlic collections? The Americas Journal of Plant Science and Biotechnology. 4(SI1):104-112.
Genomics and genetic improvement of carrot pigments - (Abstract Only)
Simon, P.W. 2011. Genomics and genetic improvement of carrot pigments [abstract]. Plant and Animal Genome Conference. W409.
The Development of RoBuST: An integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae - (Abstract Only)
Bhasi, A., Simon, P.W., Senalik, D.A., Kumar, B., Manikandan, V., Philge, P., Senapathy, P. 2011. The Development of RoBuST: An integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae [abstract]. Plant and Animal Genome Conference. P. 811.
Development of EST based markers for exploiting the carrot genome - (Abstract Only)
Iorizzo, M., Bowman, M., Simon, P.W., Cavagnaro, P., Senalik, D.A., Carputo, D., Van Deynze, A. 2011. Development of EST based markers for exploiting the carrot genome [abstract]. Plant and Animal Genome Conference. p. 175.
Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.) - (Peer Reviewed Journal)
Cavagnaro, P.F., Weng, Y., Senalik, D.A., Simon, P.W., Harkins, T.T., Huang, S. 2010. Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.). Biomed Central (BMC) Genomics. 11:569-588.
Genome-wide Characterization of Simple Sequence Repeats in Cucumber (Cucumis Sativus L.) - (Peer Reviewed Journal)
Cavagnari, P.F., Weng, Y., Senalik, D.A., Yang, L., Simon, P.W., Harkins, T.T., Kodira, C.D., Huang, S. 2010. Genome-wide Characterization of Simple Sequence Repeats in Cucumber (Cucumis Sativus L.). Biomed Central (BMC) Genomics. Available: http://www.biomedcentral.com/1471-2164/11/569.
RoBuST: An Integrated Resource of Genomics Information for Plants in the Root and Bulb Crop Families Apiaceae and Alliaceae - (Peer Reviewed Journal)
Bhasi, A., Simon, P.W., Senalik, D.A., Kumar, B., Manikandan, V., Philip, P., Senapathy, P. 2010. RoBuST: An Integrated Resource of Genomics Information for Plants in the Root and Bulb Crop Families Apiaceae and Alliaceae. Biomed Central (BMC) Plant Biology. 10:161.
New carrot and garlic germplasm to advance breeding and understand crop origins - (Abstract Only)
Simon, P.W. 2010. New carrot and garlic germplasm to advance breeding and understand crop origins [abstract]. American Society of Horticulture Science Meeting. p. 11.
Extensive Variation in Fried Chip Color and Tuber Composition in Cold-Stored Tubers of Wild Potato (Solanum) Germplasm - (Peer Reviewed Journal)
Mccann, L.C., Bethke, P.C., Simon, P.W. 2010. Extensive Variation in Fried Chip Color and Tuber Composition in Cold-Stored Tubers of Wild Potato (Solanum) Germplasm. Journal of Agriculture and Food Chemistry. 58(4):2368-2376.
Quantification of the Ratio of Plastid to Chromosomal Genome in Leaf and Root Tissue of Carrot (Daucus Carota) Using Real Time Quantitative PCR - (Abstract Only)
Bowman, M.J., Willis, D.K., Simon, P.W. 2010. Quantification of the Ratio of Plastid to Chromosomal Genome in Leaf and Root Tissue of Carrot (Daucus Carota) Using Real Time Quantitative PCR [abstract]. Plant and Animal Genome Conference. p. 114.
Genetic Variation Between Two Cucumber Genotypes Inferred from Genome-wide Microsatellite Polymorphism Analysis - (Abstract Only)
Cavagnaro, P., Weng, Y., Senalik, D.A., Harkins, T.T., Kodira, C.D., Simon, P.W., Huang, S. 2010. Genetic Variation Between Two Cucumber Genotypes Inferred from Genome-wide Microsatellite Polymorphism Analysis [abstract]. Plant and Animal Genome Conference. p. 135.
Diversity of garlic (Allium sativum L.) using SSR, EST and AFLP markers - (Abstract Only)
Acharya, L., Simon, P.W. 2010. Diversity of garlic (Allium sativum L.) using SSR, EST and AFLP markers [abstract]. Plant and Animal Genome Conference. p. 124.
Developing genomic resources for the apiaceae - (Abstract Only)
Bowman, M., Matvienko, M., Van Deynze, A., Simon, P.W., Senalik, D.A. 2010. Developing genomic resources for the apiaceae [abstract]. Plant and Animal Genome Conference. P. 037.
New carrot microsatellites – linkage mapping, diversity analysis and transferability to other apiaceae - (Abstract Only)
Cavagnaro, P.F., Chung, S., Manin, S., Atkins, A.E., Simon, P.W. 2010. New carrot microsatellites – linkage mapping, diversity analysis and transferability to other apiaceae [abstract]. Plant and Animal Genome Conference. P. 038.
DcSto, stowaway-like miniature inverted-repeat transposable elements (MITEs), are abundant and polymorphic in the carrot genome - (Abstract Only)
Podgorni, M., Mschichowska, A., Grzebelus, E., Grzebelus, D., Simon, P.W. 2010. DcSto, stowaway-like miniature inverted-repeat transposable elements (MITEs), are abundant and polymorphic in the carrot genome [abstract]. Plant and Animal Genome Conference. p. 205.
Inheritance of the Quantity of ß-carotene and Fruit Maturity of Melon (Cucumis Melon L.) - (Peer Reviewed Journal)
Cuevas, H.E., Staub, J.E., Simon, P.W. 2010. Inheritance of the Quantity of ß-carotene and Fruit Maturity of Melon (Cucumis Melon L.). Euphytica. 171(3):301-311.
Inheritance of Beta-Carotene-Associated Flesh Color in Cucumber (Cucumis Sativus L.) Fruit - (Peer Reviewed Journal)
Cuevas, H.E., Song, H., Staub, J.E., Simon, P.W. 2010. Inheritance of Beta-Carotene-Associated Flesh Color in Cucumber (Cucumis Sativus L.) Fruit. Euphytica. 171(3):301-311.
Ploidy Manipulation of the Gametophyte, Endosperm, and Sporophyte in Nature and for Crop Improvement – A Tribute to Prof. Stanley J. Peloquin (1921-2008) - (Peer Reviewed Journal)
Ortiz, R., Simon, P.W., Jansky, S.H., Stelly, D. 2009. Ploidy Manipulation of the Gametophyte, Endosperm, and Sporophyte in Nature and for Crop Improvement – A Tribute to Prof. Stanley J. Peloquin (1921-2008). Annals Of Botany. 104(5):795-807.
Major QTL for Carrot Color are Associated with Carotenoid Biosynthetic Genes and Interact Epistatically in a Domesticated x Wild Carrot Cross - (Peer Reviewed Journal)
Just, B.J., Santos, C.F., Yandell, B.S., Simon, P.W. 2009. Major QTL for Carrot Color are Associated with Carotenoid Biosynthetic Genes and Interact Epistatically in a Domesticated x Wild Carrot Cross. Theoretical and Applied Genetics. 119(7):1155-1169.
Educating the Next Generation of Plant Breeders: The Need and the Challenge - (Peer Reviewed Journal)
Baenziger, P.S., Simon, P.W., Wehner, T.C. 2009. Educating the Next Generation of Plant Breeders: The Need and the Challenge. Society for Advancement of Breeding Researches in Asia and Oceania. 14:1-10.
Serum a- and b-carotene concentrations qualitatively respond to sustained carrot feeding - (Peer Reviewed Journal)
Tanumihardjo, S., Horvitz, M., Dosti, M.P., Simon, P.W. 2009. Serum a- and b-carotene concentrations qualitatively respond to sustained carrot feeding. Experimental Biology and Medicine. 234:1280-1286.
Applying Molecular Markers in Coriander Populations with Diverse Geographical Origins - (Abstract Only)
Lopez, P.A., Widrlechner, M.P., Simon, P.W., Rai, S., Bailey, T.B., Gardner, C.A. 2009. Applying Molecular Markers in Coriander Populations with Diverse Geographical Origins. In: Proceedings of the XIII National Congress of Mexican Society of Horticultural Sciences, August 17-21, 2009, Torreon, Coahuila, Mexico. p. 2.
Genome Wide Characterization of Simple Sequence Repeats in Cucumber - (Abstract Only)
Weng, Y., Cavagnaro, P., Senalik, D.A., Harkins, T., Simon, P.W. 2009. Genome Wide Characterization of Simple Sequence Repeats in Cucumber [abstract]. International Symposium on Cucurbits Proceedings. p. 80.
A Consensus Linkage Map that Identifies Genomic Regions Controlling Beta-Carotene Quantity and Fruit Maturity in Melon (Cucumis Melo L.) - (Peer Reviewed Journal)
Cuevas, H.E., Staub, J.E., Simon, P.W., Zalapa, J.E. 2010. A Consensus Linkage Map that Identifies Genomic Regions Controlling Beta-Carotene Quantity and Fruit Maturity in Melon (Cucumis Melo L.). Theoretical and Applied Genetics. 119:741-756.
Antioxidants and Antioxidant Capacity of Biofortified Carrots (Daucus Carota, L.) of Various Colors - (Peer Reviewed Journal)
Sun, T., Simon, P.W., Tanumihardjo, S.A. 2009. Antioxidants and Antioxidant Capacity of Biofortified Carrots (Daucus Carota, L.) of Various Colors. Journal of Agricultural and Food Chemistry. 57(10):4142-4147.
Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences - (Peer Reviewed Journal)
Simon, P.W., Cavagnaro, P.F., Chung, S., Szklarczyk, M., Grzebelus, D., Senalik, D.A., Atkins, A.E. 2009. Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences. Molecular Genetics and Genomics. 281(3):273-288.
SplinkBES - A Splinkerette-Based Method for Generating Long End Sequences From Large Insert DNA Libraries - (Peer Reviewed Journal)
Simon, P.W., Cavagnaro, P.F., Senalik, D.A. 2009. SplinkBES - A Splinkerette-Based Method for Generating Long End Sequences From Large Insert DNA Libraries. Biotechniques. 47:681-690.
Bitter Gourd: Botany, Horticulture, Breeding - (Book / Chapter)
Behera, T.K., Behera, S., Bharathi, L.K., John, J., Simon, P.W., Staub, J.E. 2010. Bitter Gourd: Botany, Horticulture, Breeding. Plant Breeding Reviews (J. Janick ed.) 37:101-141. Wiley-VCH, Koln, Germany.
The Concept of Horizontal Linkage and Its Application to Genetics and Breeding - (Book / Chapter)
Peloquin, S.J., Simon, P.W., Jansky, S.H. 2009. The Concept of Horizontal Linkage and Its Application to Genetics and Breeding. In: Mohan, R.H., editor. Research Advances in Heredity. 1st edition. Kerala, India:Global Research Network. p. 1-7.
Bioavailability of Anthocyanins from Purple Carrot Juice: Effects of Acylation and Plant Matrix - (Peer Reviewed Journal)
Charron, C.S., Kurilich, A.C., Clevidence, B.A., Simon, P.W., Harrison, D.J., Britz, S.J., Baer, D.J., Novotny Dura, J. 2009. Bioavailability of Anthocyanins from Purple Carrot Juice: Effects of Acylation and Plant Matrix. Journal of Agricultural and Food Chemistry. 57(4):1226-1230.
Progress in the Development of Nutrient-Rich Nematode Resistant Carrots - (Abstract Only)
Simon, P.W., Roberts, P.A., Nunez, J. 2009. Progress in the Development of Nutrient-Rich Nematode Resistant Carrots [abstract]. 33rd International Carrot Conference. Paper No. BG-101.
Genetic Influences on the Seed Yielding Ability of Carrot Hybrids - (Abstract Only)
Simon, P.W., Kane, R.T. 2009. Genetic Influences on the Seed Yielding Ability of Carrot Hybrids [abstract]. 33rd International Carrot Conference. Paper No. BG-102.
Development of 304 new microsatellite markers for carrot. Analysis of their potential for linkage mapping, assessment of genetic diversity and cross-taxa utilization - (Abstract Only)
Simon, P.W., Cavagnaro, P.F., Chung, S., Ali, A., Yildiz, M., Alesandro, M.S. 2009. Development of 304 new microsatellite markers for carrot. Analysis of their potential for linkage mapping, assessment of genetic diversity and cross-taxa utilization [abstract]. 33rd International Carrot Conference. Paper No. BG-103.
Understanding the molecular mechanism of carotenoid accumulation in carrot (Daucus carota) using real time quantitative PCR - (Abstract Only)
Simon, P.W., Bowman, M.J., Willis, D.K. 2009. Understanding the molecular mechanism of carotenoid accumulation in carrot (Daucus carota) using real time quantitative PCR [abstract]. 33rd International Carrot Conference. Paper No. BG-104.
Expression Analysis of Carotenoid Biosynthesis Genes in Carrot (Daucus Carota) Using Real Time Quantitative PCR - (Abstract Only)
Simon, P.W., Bowman, M.J., Willis, D.K. 2009. Expression Analysis of Carotenoid Biosynthesis Genes in Carrot (Daucus Carota) Using Real Time Quantitative PCR. Plant and Animal Genome Conference [abstract]. Plant and Animal Genome Conference. p. 717.
Development and Characterization of Novel SSR Markers in Carrot (Daucus Carota L.) and Their Application for Mapping and Diversity Analysis in Apiaceae - (Abstract Only)
Simon, P.W., Cavagnaro, P.F., Chung, S., Ali, A., Yildiz, M., Alesandro, M.S. 2009. Development and Characterization of Novel SSR Markers in Carrot (Daucus Carota L.) and Their Application for Mapping and Diversity Analysis in Apiaceae. Plant and Animal Genome Conference [abstract]. Plant and Animal Genome Conference. p. 132.
Association Between Pachytene Chromosomes and Linkage Groups in Carrot - (Abstract Only)
Simon, P.W., Iovene, M., Cavagnaro, P.F., Jiang, J. 2009. Association Between Pachytene Chromosomes and Linkage Groups in Carrot. Plant and Animal Genome Conference [abstract]. Plant and Animal Genome Conference. p. 201.
Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato - (Peer Reviewed Journal)
Iovene, M., Wielgus, S.M., Simon, P.W., Buell, C.R., Jiang, J. 2008. Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato. Genetics. 180(3):1307-1317.
Biofortified Carrot Intake Enhances Liver Antioxidant Capacity and Vitamin A Status in Mongolian Gerbils - (Peer Reviewed Journal)
Mills, J.P., Simon, P.W., Tanumihardjo, S.A. 2008. Biofortified Carrot Intake Enhances Liver Antioxidant Capacity and Vitamin A Status in Mongolian Gerbils. Journal of Nutrition. 138(9):1692-1698.
Diversity of Dcmaster-Like Elements of the Pif/harbinger Superfamily in the Carrot Genome Reprint Icon - (Peer Reviewed Journal)
Grzebelus, D., Simon, P.W. 2008. Diversity of DcMaster-like elements of the PIF/Harbinger superfamily in the carrot genome. Genetica. Available: http://www.ncbi.nlm.nih.gov/pubmed/18535910.
Major Cytogenetic Landmarks and Karyotype analysis in Carrot and Other Apiaceace - (Peer Reviewed Journal)
Iovene, M., Grzebelus, E., Carputo, D., Jiang, J., Simon, P.W. 2008. Major Cytogenetic Landmarks and Karyotype analysis in Carrot and Other Apiaceace. American Journal of Botany. 95:793-804.
Mapping of Genetic Loci that Regulate Accumulation of Beta-Carotene in Fruit of U.S. Western Shipping Melon (Cucumis Melo L.) and Their Association With Putative Carotenoid Biosynthesis Genes - (Peer Reviewed Journal)
Cuevas, H.E., Staub, J.E., Simon, P.W., McCreight, J.D., Zalapa, J.E. 2008. Mapping of Genetic Loci that Regulate Accumulation of Beta-Carotene in Fruit of U.S. Western Shipping Melon (Cucumis Melo L.) and Their Association With Putative Carotenoid Biosynthesis Genes. Theoretical and Applied Genetics 117:1345-1359.
Construction and characterization of a deep-coverage carrot (Daucus carota L.) BAC library - (Abstract Only)
Cavagnaro, P.F., Chung, S., Simon, P.W. 2008. Construction and characterization of a deep-coverage carrot (Daucus carota L.) BAC library [abstract]. 2008 Plant and Animal Genome Meeting. p. 56.
Major Cytogenetic Landmarks and Karyotype Analysis in Carrot (Daucus carota L.) and Other Apiaceace - (Abstract Only)
Iovene, M., Grzebelus, E., Carputo, D., Jiang, J., Simon, P.W. 2008. Major Cytogenetic Landmarks and Karyotype Analysis in Carrot (Daucus carota L.) and Other Apiaceace [abstract]. 2008 Plant and Animal Genome Meeting. p. 201.
Plant Breeding for Human Nutritional Quality - (Peer Reviewed Journal)
Simon, P.W., Pollak, L.M., Clevidence, B.A., Holden, J.M., Haytowitz, D.B. 2009. Plant Breeding for Human Nutritional Quality. Plant Breeding Reviews. 31:325-415.
Carrot - (Book / Chapter)
Simon, P.W., Freeman, R.E., Vieira, J.V., Boiteux, L.S., Briard, M., Nothnagel, T., Michalik, B., Kwon, Y. 2008. Carrot. In: Prohens, J., Nuez, F. editors. Handbook of Plant Breeding. Volume 2. New York, NY: Springer. p. 327-357.
Bitter Gourd; A vegetable to Improve Human Health - (Peer Reviewed Journal)
Behera, T., Simon, P.W., Staub, J.E. 2007. Bitter Gourd; A vegetable to Improve Human Health. Medicinal and Aromatic Plants: Production, Business and Applications. 1(2):224-227.
Genetic Characterization of Allium Tuncelianum: An Endemic Edible Allium Species With Garlic Odor - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2008. Genetic Characterization of Allium Tuncelianum: An Endemic Edible Allium Species With Garlic Odor. Scientia Horticultureae. 115(4):409-415.
Role of Color and Pigments in Breeding, Genetics, and Nutritional Improvement of Carrots - (Book / Chapter)
Simon, P.W., Tanumihardjo, S.A., Clevidence, B.A., Novotny Dura, J. 2008. Role of Color and Pigments in Breeding, Genetics, and Nutritional Improvement of Carrots. In: Culver, C.A., Wrolstad, R.E., editors. Color Quality of Fresh and Processed Foods. Washington, D.C.: Oxford University Press. p. 151-165.
A Chromosome-Specific Estimate of Transmission of Heterozygosity by 2n Gametes in Potato - (Peer Reviewed Journal)
Peloquin, S.J., Boiteux, L.S., Simon, P.W., Jansky, S.H. 2008. A chromosome-specific estimate of transmission of heterozygosity by 2n gametes in potato. Journal of Heredity. 99(2):177-181.
Molecular Characterization of Kastamonu Garlic: An Economically Important Garlic Clone in Turkey - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2008. Molecular Characterization of Kastamonu Garlic: An Economically Important Garlic Clone in Turkey. Scientia Horticultureae. 115(2):203-208.
Characterization of an Unusual Cytoplasmic Chimera Detected in Bolting Garlic (Allium sativum L.) Clones - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Senalik, D.A., Simon, P.W. 2007. Characterization of an Unusual Cytoplasmic Chimera Detected in Bolting Garlic (Allium sativum L.) Clones. Journal of the American Society for Horticultural Science. 132:664-669.
Compatibility Relations Between the Edible Carrot Daucus Carota and D. Pusillus, a Related Wild Species from the Argentinian Pampas - (Peer Reviewed Journal)
Camadro, E.L., Cauhepe, M.A., Simon, P.W. 2008. Compatibility Relations Between the Edible Carrot Daucus Carota and D. Pusillus, a Related Wild Species from the Argentinian Pampas. Euphytica. 159(1-2):103-109.
ß-Carotene from Red Carrot Maintains Vitamin A Status, but Lycopene Bioavailability Is Lower Relative to Tomato Paste in Mongolian Gerbils - (Peer Reviewed Journal)
Mills, J.P., Simon, P.W., Tanumihardjo, S.A. 2007. ß-Carotene from Red Carrot Maintains Vitamin A Status, but Lycopene Bioavailability Is Lower Relative to Tomato Paste in Mongolian Gerbils. Journal of Nutrition. 137:1395-1400.
Carotenoid pathway genes and accumulation of B-carotene in Cucumis melo L - (Abstract Only)
Cuevas, H.E., Staub, J.E., Simon, P.W., McCreight, J.D., Zalapa, J.E. 2007. Carotenoid pathway genes and accumulation of B-carotene in Cucumis melo L [abstract]. American Society for Horticultural Science 104th Annual Conference. 42(4):1013-1014.
Assessing phenotypic, biochemical, and molecular diversity in coriander (Coriandrum sativum L.) germplasm - (Peer Reviewed Journal)
Lopez, P.A., Widrlechner, M.P., Simon, P.W., Rai, S., Boylston, T.D., Isbell, T., Bailey, T.B., Gardner, C.A., Wilson, L.A. 2008. Assessing phenotypic, biochemical, and molecular diversity in coriander (Coriandrum sativum L.) germplasm. Genetic Resources and Crop Evolution. 55:247-275.
Screening Coriander Gene Pool for Special Uses - (Proceedings)
Lopez, P.A., Widrlechner, M.P., Simon, P.W., Rai, S., Bailey, T.B., Gardner, C.A. 2007. Screening coriander gene pool for special uses. In: Janick, J. and Whipkey, A., editors. Issues in New Crops and New Uses. 2006 AAIC Annual Meeting and Sixth New Crops Symposium, October 14-18, 2006, San Diego, California. p. 280-283.
Effect of cooking on garlic (Allium sativum) antiplatelet activity and thiosulfinates content - (Peer Reviewed Journal)
Cavagnaro, P.F., Camargo, A., Galmarini, C.R., Simon, P.W. 2007. Effect of cooking on garlic (Allium sativum) antiplatelet activity and thiosulfinates content. Journal of Agricultural and Food Chemistry. 55:1280-1288.
Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping - (Peer Reviewed Journal)
Just, B.J., Santos, C., Boiteux, L.S., Oloizia, B.B., Simon, P.W. 2006. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping. Journal of Theoretical and Applied Genetics. 114:693-704.
Bioavailability of beta-carotene (betaC) from purple carrots is the same as typical orange carrots while high-betaC carrots increase betaC stores in Mongolian gerbils (Meriones unguiculatus) - (Peer Reviewed Journal)
Porter Dosti, M., Mills, J.P., Simon, P.W., Tanumihardjo, S.A. 2006. Bioavailability of beta-carotene (betaC) from purple carrots is the same as typical orange carrots while high-betaC carrots increase betaC stores in Mongolian gerbils (Meriones unguiculatus). British Journal of Nutrition. 96(2):260-269.
Screening the Gene Pool for Special Uses in Coriander - (Abstract Only)
Lopez, P.A., Widrlechner, M.P., Simon, P.W., Rai, S., Bailey, T.B., Gardner, C.A. 2006. Screening the gene pool for special uses in coriander [abstract]. Association for the Advancement of Industrial Crops Conference. p. 68
The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome - (Peer Reviewed Journal)
Grzebelus, D., Jagosz, B., Simon, P.W. 2007. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome. Gene. 390:67-74.
Sequence Homology of Polymorphic Aflp Markers in Garlic (Allium Sativum L.) - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2006. Sequence homology of polymorphic AFLP markers in garlic (Allium sativum l.). Genome. 49:1246-1255.
Geographical Distribution of Wild Daucus Species in the Natural Grasslands of the Argentinian Pampas - (Peer Reviewed Journal)
Camadro, E.L., Cauhepe, M.A., Simon, P.W. 2007. Geographical Distribution of Wild Daucus Species in the Natural Grasslands of the Argentinian Pampas . Genetic Resources and Crop Evolution. 54(4):855-863.
Association of Reversible Inactivation of Maize Transposable Element, Ds, with Tissue-Specific Processing of the 35s:tpase Transcript in Carrot (Daucus Carota L.) - (Abstract Only)
Ipek, A., Ipek, M., Simon, P.W. 2006. Association of reversible inactivation of maize transposable element, Ds, with tissue-specific processing of the 35s:TPase transcript in carrot (Daucus carota l.)[abstract]. Journal of Horticultural Science and Biotechnology. 81:819-826.
Carrot - (Book / Chapter)
Simon, P.W., Goldman, I.L. 2007. Carrot. In: Singh, R.J. Genetic Resources, Chromosome Engineering, and Crop Improvement Series, Volume 3. Boca Raton: CRC Press. p. 497-517.
Heritabilities and Minimum Gene Number Estimates of Carrot Carotenoids - (Peer Reviewed Journal)
Santos, C., Simon, P.W. 2006. Heritabilities and minimum gene number estimates of carrot carotenoids. Euphytica. 151:79-86.
Master - a Novel Family of Pif/harbinger-Like Transposable Elements Identified in Carrot (Daucus Carota L.) - (Peer Reviewed Journal)
Grzebelus, D., Yau, Y., Simon, P.W. 2006. Master - a novel family of PIF/Harbinger-like transposable elements identified in carrot (Daucus carota L.). Molecular Genetics and Genomics. 275:450-459.
Single Seed Raman Measurements Allow Taxonomical Discrimination of Apiaceae Accessions Collected in Gene Banks - (Peer Reviewed Journal)
Baranski, R., Baranska, M., Schulz, H., Simon, P.W., Nothnagel, T. 2006. Single seed Raman measurements allow taxonomical discrimination of Apiaceae accessions collected in gene banks. Biopolymers. 81:497-505.
Sequence Tagged Microsatelite Sites for Carrot (Daucus Carota L.) - (Peer Reviewed Journal)
Hyman, J.R., Simon, P.W. 2005. Sequence Tagged Microsatelite Sites for Carrot (Daucus Carota L.). Molecular Breeding. 16:1-10.
Genetic Transformation of An Ac/ds - Based Transposon Tagging System in Carrot (Daucus Carota) - (Peer Reviewed Journal)
Ipek, A., Masson, P., Simon, P.W. 2006. Genetic transformation of an Ac/Ds - based transposon tagging system in carrot (Daucus carota). European Journal of Horticultural Science. 71:245-251.
Characterization of Anthocyanins from Diverse Germplasm of Purple Carrot - (Abstract Only)
Silva, E., Simon, P.W. 2003. Characterization of anthocyanins from diverse germplasm of purple carrot [abstract]. HortScience. 38:674.
Plasma and Urine Responses Are Lower for Acylated Vs Nonacylated Anthocyanins from Raw and Cooked Purple Carrot. - (Peer Reviewed Journal)
Kurilich, A.C., Clevidence, B.A., Britz, S.J., Simon, P.W., Novotny Dura, J. 2005. Plasma and urine responses are lower for acylated vs nonacylated anthocyanins from raw and cooked purple carrot. Journal of Agricultural and Food Chemistry. 53:6537-6542.
Genetic, Physiological, and Environmental Factors Affecting Acrylamide Concentration in Fried Potato Products - (Book / Chapter)
Silva, E.M., Simon, P.W. 2006. Genetic, Physiological, and Environmental Factors Affecting Acrylamide Concentration in Fried Potato Products. In: Friedman, M., Mottram, D., editors. Advances in Experimental Medicine and Biology. New York, NY:Springer. p. 371-386.
Vegetables and Vitamins, Plants and People - (Peer Reviewed Journal)
Simon, P.W. 2005. Vegetables and vitamins, plants and people. Folia Horticulturae. 15:3-12.
Path Analysis Suggests Phytoene Accumulation As the Key Step Limiting the Carotenoid Pathway in Roots of White Carrot - (Peer Reviewed Journal)
Santos, C.A., Senalik, D.A., Simon, P.W. 2005. Path analysis suggests phytoene accumulation as the key step limiting the carotenoid pathway in roots of white carrot. Genetics and Molecular Biology. 28:287-293.
Carotenoid Profiles and Consumer Sensory Evaluation of Specialty Carrots - (Peer Reviewed Journal)
Surles, R., Weng, N., Simon, P.W., Tanumihardjo, S. 2004. Carotenoid profiles and consumer sensory evaluation of specialty carrots. Journal of Agriculture and Food Chemistry. 52:3417-3421.
Molecular Tagging and Selection for Sugar-Type in Carrot Roots Using Co-Dominant, Pcr-Based Markers - (Peer Reviewed Journal)
Yau, Y.Y., Santos, K., Simon, P.W. 2005. Molecular tagging and selection for sugar-type in carrot roots using co-dominant, PCR-based markers. Molecular Breeding. 16:1-10
Mapping of Major Carrot Color Genes An Ex Expression of Carotenoid Biosynthetic Genes - (Abstract Only)
Just, B., Simon, P.W. 2004. Mapping of major carrot color genes an ex expression of carotenoid biosynthetic genes [abstract]. Hortscience. 39:870.
Demonstration of Linkage and Development of the First Low-Density Genetic Map of Garlic Based on Aflptm Markers - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Almquist, S.G., Simon, P.W. 2005. Demonstration of linkage and development of the first low-density genetic map of garlic based on aflptm markers. Theoretical and Applied Genetics. 110:228-236.
Realizing Value from Central Asian Allium Germplasm Collections - (Peer Reviewed Journal)
Simon, P.W. 2005. Realizing value from Central Asian Allium germplasm collections. HortScience. 40:309-310.
Lutein and Beta-Carotene Are Bioavailable in Humans from Lutein-Containing Yellow Carrots - (Peer Reviewed Journal)
Molldrem, K., Li, J., Simon, P.W., Tanumijardjo, S. 2004. Lutein and beta-carotene are bioavailable in humans from lutein-containing yellow carrots. American Journal of Clinical Nutrition. 80:131-136.
Employment of Flanking Codominant Sts Markers to Estimate Allelic Substitution Effects of a Nematode Resistance Locus in Carrot - (Peer Reviewed Journal)
Boiteux, L.S., Hyman, J.R., Bach, I.C., Fonseca, M.N., Matthews, W.C., Roberts, P.A., Simon, P.W. 2004. Employment of flanking codominant STS markers to estimate allelic substitution effects of a nematode resistance locus in carrot. Euphytica. 136:37-44.
Merging Carrot Linkage Groups Based on Conserved Dominant Aflp Markers in F2 Populations - (Peer Reviewed Journal)
Santos, C.A., Simon, P.W. 2004. Merging carrot linkage groups based on conserved dominant AFLP markers in F2 populations. Journal of the American Society for Horticultural Science. 129:211-217.
Environmental and Genetic Effects on Garlic Growth, Flowering, and Bulb Characters - (Abstract Only)
Simon, P.W., Hannan, R.M., Jenderek, M.M., Voss, R.E. 2003. Environmental and genetic effects on garlic growth, flowering, and bulb characters [abstract]. Hortscience. 38:783.
Relative Bioavailability of Lycopene from Lycopene "red" Carrots Compared to Tomato - (Peer Reviewed Journal)
Horvitz, M.A., Simon, P.W., Tanumihardjo, S.A. 2004. Relative bioavailability of lycopene from lycopene "red" carrots compared to tomato. American Journal of Clinical Nutrition.
Sequencing of Specific Aflp Amplicons Reveals Highly Conserved DNA Sequences Mapping to the Same Linkage Groups in Two Unrelated F2 Populations of Carrot - (Peer Reviewed Journal)
Santos, C.A., Simon, P.W. 2003. Sequencing of specific AFLP amplicons reveals highly conserved DNA sequences mapping to the same linkage groups in two unrelated F2 populations of carrot. Genetics and Molecular Biology. 25:195-201.
A 2.5-KB Insert Eliminates Acid Soluble Invertase Isozyme II Transcript in Carrot (Daucus Carota L.) Roots, Causing High Sucrose Accumulation - (Peer Reviewed Journal)
Yau, Y., Simon, P.W. 2003. A 2.5-kb insert eliminates acid soluble invertase isozyme II transcript in carrot (Daucus carota L.) roots, causing high sucrose accumulation. Plant Molecular Biology. 53:151–162.
Development of Co-Dominant Markers Linked to the Mj-L Locus in Carrot (Daucus Carota L. Ssp. Sativus) - (Abstract Only)
Hyman, J., Simon, P.W., Burmeister, A. 2003. Development of co-dominant markers linked to the Mj-l locus in carrot (Daucus carota L. ssp. sativus)[abstract]. HortScience. 38:717.
Molecular Data Suggest Multiple Members Comprising the Alliinase Gene Family in Garlic - (Abstract Only)
Cavagnaro, P., Masuelli, R., Simon, P.W. 2003. Molecular data suggest multiple members comprising the alliinase gene family in garlic [abstract]. HortScience. 38:804-805.
A Carotenoid Biosynthesis Function Map in Carrot - (Abstract Only)
Just, B., Santos, C., Simon, P.W. 2003. A carotenoid biosynthesis function map in carrot [abstract]. HortScience. 38:717.
Nutritional Quality - (Book / Chapter)
Just, B., Simon, P.W. 2004. Nutritional quality. Book Chapter.
Flowering, Seed Production and the Genesis of Garlic Breeding - (Peer Reviewed Journal)
Simon, P.W., Jenderek, M.M. 2003. Flowering, seed production and the genesis of garlic breeding. Plant Breeding. 32:211-244.
Qtl Analyses Reveal Clustered Loci for Accumulation of Major Provitamin a Carotenes and Lycopene in Carrot Roots - (Peer Reviewed Journal)
Santos, C.A., Simon, P.W. 2002. QTL analyses reveal clustered loci for accumulation of major provitamin A carotenes and lycopene in carrot roots. Molecular Genetics and Genomics. 268:122-129.
Comparison of Aflps, Rapd Markers, and Isozymes for Diversity Assessment of Garlic and Detection of Putative Duplicates in Germplasm Collections - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2003. Comparison of AFLPs, RAPD markers, and isozymes for diversity assessment of garlic and detection of putative duplicates in germplasm collections. Journal of the American Society for Horticultural Science. 128:246-252.
Classical and Molecular Breeding for Disease and Pest Resistance in Carrots - (Review Article) - (11-Mar-02)
Pigments - (Book / Chapter) - (12-Feb-02)
Carotenoids - (Book / Chapter) - (12-Feb-02)
Pcr-Based Markers to Differentiate the Mitochondrial Genomes of Petaloid and Male Fertile Carrot (Daucus Carota L.) - (Peer Reviewed Journal)
Bach, I.C., Olesen, A., Simon, P.W. 2002. PCR-based markers to differentiate the mitochondrial genomes of petaloid and male fertile carrot (Daucus carota L.). Euphytica. 127:353-365.
Diversity, Fertility and Seed Production of Garlic - (Book / Chapter)
Etoh, T., Simon, P.W. 2002. Diversity, fertility and seed production of garlic. In: Rabinowitch, H.D. and Currah, L., editors. Advances in Allium Science. New York, NY: CABI Publishing. p. 101-118.
The Use of Aflp Markers for the Identification of Carrot Breeding Lines Andf1 Hybrids - (Peer Reviewed Journal) - (06-Jan-02)
Molecular Diversity Analysis of Cultivated Carrot (Daucus Carota L.) and Wild Daucus Populations Reveals a Genetically Unstructured Composition - (Peer Reviewed Journal) - (29-Dec-01)
Sequencing of Specific Aflp Amplicons Reveals Highly Conserved DNA Sequences Mapping to the Same Linkage Groups in Two Unrelated F2 Populations of Carrot - (Peer Reviewed Journal) - (20-Dec-01)
Diallel Analysis of High Carotenoid Content in Cucumber Fruit - (Peer Reviewed Journal) - (12-Sep-01)
Classical Breeding to Improve Vegetable Vitamin and Provitamin Content - (Book / Chapter) - (15-Feb-01)
Modified Protocols for Rapid Extraction of Plant Genomic Dna, Aflp Analysisand Visualization with Radioisotope Or Silver Stain in Carrots - (Peer Reviewed Journal) - (25-Jan-01)
Domestication, Historical Development, and Modern Breeding of Carrot - (Peer Reviewed Journal) - (15-Jan-01)
Carrots and Related Vegetable Umbelliferae - (Book / Chapter) - (16-May-00)
Molecular Breeding of Vegetable Crops for Improved Provitamin a Carotenoid Content - (Book / Chapter) - (07-May-00)
Lack of Acid Soluble Invertase Isozyme II Transcript Is Associated with High Sucrose Accumulation in a Naturally Occurring Invertase Mutant of Carrot (Daucus Carota L.) - (Abstract Only) - (08-Jan-00)
Pcr Markers Specific for the Mitochondrial Genome of Petaloid Carrot (Daucus Carota L.) - (Abstract Only) - (08-Jan-00)
Improved Phytonutrient Content Through Plant Genetic Improvement - (Peer Reviewed Journal) - (07-Sep-99)
Evidence for Simply Inherited Dominant Resistance to Meloidogyne Javanica in Carrot - (Peer Reviewed Journal) - (22-Jul-99)
Rapd Linkage Map of the Genomic Region Encompassing the Root-Knot Nematode Meloidogyne Javanica Resistance Locus in Carrot - (Peer Reviewed Journal) - (22-Jul-99)
Evidence for Maternal Inheritance of the Chloroplast Genome in Cultivated Carrot (Daucus Carota L. Ssp. Sativus) - (Peer Reviewed Journal) - (12-Feb-99)
Linkage Relationships among Molecular Markers and Storage Root Traits of Carrot (Daucus Carota L. Ssp. Sativus) - (Peer Reviewed Journal) - (28-Nov-98)
Conversion of An Aflp Fragment Linked to the Carrot Y2 Locuc to a Simple, Codominant, Pcr-Based Marker Form - (Peer Reviewed Journal) - (11-Sep-98)
Expression of Soluble Invertase in Transformed Carrot - (Abstract Only) - (04-Jun-98)
Effects of Plant Tissue and DNA Purification Method on Rapd Based Genetic Fingerprinting Analysis in (Daucus Carota L) - (Peer Reviewed Journal) - (01-Jun-98)
Genetic Relationships and Diversity in Carrot and Other Daucus Taxa Based on Nuclear Testriction Fragment Length Polymorphisms (Nrflps) - (Peer Reviewed Journal) - (24-May-98)
Aflp-Derived, Codominant Markers for Locus-Specific Applications - (Abstract Only) - (19-May-98)
Phylogeny and Relationships in Daucus Based on Restriction Fragment Length Polymorphisms (Rflps) of the Chloroplast and Mitochondrial Genomes - (Peer Reviewed Journal) - (14-Apr-98)
Continuous Callus Production and Regeneration of Garlic (Allium Sativum L) Using Root Segments from Shoot Tip-Derived Plantlets - (Peer Reviewed Journal) - (30-Mar-98)
Promoter Activity and Osmoticum Effect in Garlic and Onion for Transformation - (Abstract Only) - (28-Jun-96)
B7262, Purple Carrot Inbred - (Peer Reviewed Journal) - (04-Jun-96)
Molecular Mapping of Carrot (Daucus Carota L.) Using Rflp and Rapd Markers - (Proceedings) - (08-Jan-96)
Last Modified: 5/27/2014