Projects

Curation and Development of the Soybean Breeder's Toolbox and Its Integration with Other Plant Genome Databases Appropriated (D)   Accession Number: 413173

Legume Information System and Network - a Legume Bioinformatics Resource Specific Cooperative Agreement (S)   Accession Number: 411872

Publications

SoyBase, The USDA-ARS Soybean Genetics and Genomics Database - (Peer Reviewed Journal)

Grant, D.M., Nelson, R., Cannon, S.B., Shoemaker, R.C. 2009. SoyBase, The USDA-ARS Soybean Genetics and Genomics Database. Nucleic Acids Research. Doi: 10.1093/nar/gkp798.

Integrating Microarray Analysis and the Soybean Genome to Understand the Soybean's Iron Deficiency Response - (Peer Reviewed Journal)

O'Rourke, J.A., Nelson, R., Grant, D.M., Schmutz, J., Grimwald, J., Cannon, S.B., Vance, C.P., Graham, M.A., Shoemaker, R.C. 2009. Integrating Microarray Analysis and the Soybean Genome to Understand the Soybean's Iron Deficiency Response. Biomed Central(BMC)Genomics. 10:376. Available: http://www.biomedcentral.com/1471-2164/10/376.

Soybean Comparative Genomics - (Book/Chapter) - (03-Mar-09)

Genetics, Genomics and Breeding in Soybean - (Book/Chapter) - (03-Mar-09)

Genomic Studies in Soybean: Toward Understanding Seed Oil and Protein Production - (Abstract)

Bolon, Y.E., Joseph, B., Cannon, S.B., Diers, B., Farmer, A., Graham, M.A., May, G., Muehlbauer, G., Specht, J., Tu, Z., Weeks, N., Xu, W., Shoemaker, R.C., Vance, C.P. 2008. Genomic Studies in Soybean: Toward Understanding Seed Oil and Protein Production [abstract]. IV International Conference on Legume Genomics and Genetics, December 7-12, 2008, Puerto Vallarta, Mexico. Abstract No. W28. p. 101 and Abstract No. P57, p. 63.

An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes - (Peer Reviewed Journal)

Bertioli, D., Moretzsohn, M., Madsen, L.H., Sandal, N., Leal-Bertioli, S., Guimaraes, P., Hougaard, B.K., Fredslund, J., Schauser, L., Nielsen, A.M., Sato, S., Tabata, S., Cannon, S.B. 2009. An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes. BMC Genomics. 10:45.

Replication of Nonautonomous Retroelements in Soybean Appears to be Both Recent and Common - (Peer Reviewed Journal)

Wawrzynski, A., Ashfield, T., Chen, N.W., Mammadov, J., Nguyen, A., Podicheti, R., Cannon, S.B., Thareau, V., Ameline-Torregrosa, C., Cannon, E., Chacko, B., Couloux, A., Dalwani, A., Denny, R., Deshpande, S., Egan, A., Glover, N., Howell, S., Ilut, D., Lai, H., Martin Del Campo, S., Metcalf, M., O'Bleness, M., Pfeil, B., Ratnaparkhe, M., Roe, B., Maroof, M., Samain, S., Sanders, I., Segurens, B., Sevignac, M., Sherman-Broyles, S., Tucker, D.M., Yi, J., Doyle, J.J., Geffroy, V., Roe, B., Maroof, M., Young, N., Innes, R.W. 2008. Replication of Nonautonomous Retroelements in Soybean Appears to be Both Recent and Common. Plant Physiology. 148:1760-1771.

Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions Following Polyploidy in the Ancestor of Soybean - (Peer Reviewed Journal)

Innes, R.W., Ameline-Torregrosa, C., Ashfield, T., Cannon, E., Cannon, S.B., Chacko, B., Chen, N.W., Couloux, A., Dalvani, A., Denny, R., Deshpade, S., Doyle, J.J., Egan, A., Geffroy, V., Glover, N., Hans, C.S., Howell, S., Ilut, D., Jackson, S., Lai, H., Mammadov, J., Martin Del Campo, S., Metcalf, M., Nguyen, A., O'Bleness, M., Pfeil, B., Podicheti, R., Ratnaparkhe, M., Roe, B., Saghai, M.A., Samain, S., Sanders, I., Segurens, B., Sevigna, M., Sherman-Broyles, S., Thareau, V., Tucker, D., Walling, J., Wawrzynski, A., Yi, J., Young, N.D. 2008. Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions Following Polyploidy in the Ancestor of Soybean. Plant Physiology. 148:1740-1759.

The Soybean Breeder¿s Toolbox: Updated Features and New Data - (Abstract) - (20-Jul-08)

Comparative Genomics in Legumes - (Proceedings/Symposium)

Cannon, S.B. 2008. Comparative genomics in legumes. In:Yamada, T., Spangenberg, G., editors, Proceedings of the 5th International Symposium on the Molecular Breeding of Forage and Turf, July 1-6, 2007, Sapporo, Japan. p. 41.

Microsatellite Discovery from BAC End Sequences and Genetic Mapping to Anchor the Soybean Physical and Genetic Maps - (Peer Reviewed Journal)

Shoemaker, R.C., Grant, D.M., Olson, T., Warren, W.C., Wing, R., Yu, Y., Kim, H., Cregan, P.B., Joseph, B., Futrell-Griggs, M., Nelson, W., Davito, J., Walker, J., Wallis, J., Kremitski, C., Scheer, D., Clifton, S., Graves, T., Nguyen, H., Wu, X., Luo, M., Dvorak, J., Nelson, R., Cannon, S.B., Thomkins, J., Schmutz, J., Stacey, G., Jackson, S. 2008. Microsatellite Discovery from BAC End Sequences and Genetic Mapping to Anchor the Soybean Physical and Genetic Maps. Genome. 51:294-302.

Identification and Characterization of Nbs-Lrr Genes in the Model Plant Medicago Truncatula - (Peer Reviewed Journal)

Ameline-Torregrosa, C., Wang, B., O'Bleness, M., Deshpande, S., Zhu, H., Roe, B., Young, N.D., Cannon, S.B. 2008. Identification and characterization of NBS-LRR encoded genes in the model plant medicago truncatula. Plant Physiology. 146:5-21.

Genetic dissection of resistance to anthracnose and powdery mildew in Medicago truncatula - (Peer Reviewed Journal)

Ameline-Torregrosal, C., Cazaux, M., Danesh, D., Chardon, F., Cannon, S.B., Esquerre-Tugaye, M., Dumas, B., Young, N.D., Samac, D.A., Huguet, T., Jacquet, C. 2008. Genetic dissection of resistance to anthracnose and powdery mildew in Medicago truncatula. Molecular Plant-Microbe Interactions. 21(1):61-69.

Legume Comparative Genomics - (Book/Chapter)

Cannon, S.B. 2008. Legume comparative genomics. In: Stacey, G. editor. Genetics and Genomics of Soybean. Series:Plant Genetics and Genomics:Crops and Models 2. New York, NY: Springer-Verlag. p. 35-54.

Molecular Evolution of Lysin Motif-Type Receptor-Like Kinases in Plants - (Peer Reviewed Journal)

Zhang, X., Wu, X., Findley, S., Wan, J., Libault, M., Nguyen, H.T., Cannon, S.B. 2007. Molecular evolution of lysin motif-type receptor-like kinases in plants. Plant Physiology. 144:623-636.

Construction, characterization and preliminary BAC-end sequencing analysis of a bacterial artificial chromosome library of white clover (Trifolium repens L.) - (Peer Reviewed Journal)

Febrer, M., Cheung, F., Town, C.D., Cannon, S.B., Young, N.D., Abberton, M., Jenkins, G., Milbourne, D. 2007. Construction, characterization and preliminary BAC-end sequencing analysis of a bacterial artificial chromosome library of white clover (Trifolium repens L.). Genome. 50:412-421.

Legume Genome Evolution Viewed Through the Medicago Truncatula and Lotus Japonicus Genomes - (Peer Reviewed Journal)

Cannon, S.B., Sterck, L., Rombauts, S., Sato, S., Cheung, F., Gouzy, J., Wang, X., Mudge, J., Vasdewani, J., Humphray, S.J., Nicholson, C., Spannagl, M., Schiex, T., Mayer, K., Schoof, H., Rogers, J., Quetier, F., Oldroyd, G., Debelle, F., Cook, D.R., Roe, B., Town, C.D., Tabata, S., Van De Peer, Y., Young, N.D. 2006. Legume genome evolution viewed through the medicago truncatula and lotus japonicus genomes. Proceedings of the National Academy of Sciences. 103(40):14959-14964.

Taking the First Steps Towards a Standard for Reporting on Phylogenies: Minimal Information About a Phylogenetic Analylsis (Miapa) - (Peer Reviewed Journal)

Leebens-Mack, J., Vision, T., Brenner, E., Bowers, J.E., Cannon, S.B., Clement, M.J., Cunningham, C.W., Depamphilis, C., Desalle, R., Doyle, J.J., Eisen, J.A., Gu, X., Harshman, J., Kellogg, E., Koonin, E.V., Philippe, H., Pires, J., Qiu, Y., Rhee, S.Y., Sjolander, K., Soltis, D.E., Stevens, P., Stevenson, D.W., Warnow, T., Zmasek, C., Soltis, P.S. 2006. Taking the first steps towards a standard for reporting on phylogenies: minimal information about a phylogenetic analylsis (miapa). OMICS: A Journal of Integrative Biology. 10(20):231-237.