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United States Department of Agriculture

Agricultural Research Service

Related Topics

SHIAOMAN CHAO
Cereal Crops Research
Research Molecular Geneticist

Phone: (701) 239-1462
Fax: (701) 239-1445
USDA,ARS,BRL
1605 ALBRECHT BLVD N
FARGO, ND, 58102-2765

Projects
Genetic Improvement of Durum and Spring Wheat for Quality and Resistance to Diseases and Pests
Appropriated (D)
  Accession Number: 424595
Enriching and Understanding the Wheat Genome by Inducing Homoeologous Recombination
Reimbursable (R)
  Accession Number: 425718
Improving Barley and Wheat Germplasm for Changing Environments
Reimbursable (R)
  Accession Number: 421060
Use of High Throughput Genotyping Systems to Detect Markers Associated with Agronomic Traits in Durum Wheat
Specific Cooperative Agreement (S)
  Accession Number: 427234

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Necrotrophic effector-triggered susceptibility (NETS) underlies the barley-Pyrenophora teres f. teres interaction specific to chromosome 6H - (Peer Reviewed Journal)
Liu, Z., Holmes, D.J., Faris, J.D., Chao, S., Brueggeman, R., Edwards, M.C., Friesen, T.L. 2014. Necrotrophic effector-triggered susceptibility (NETS) underlies the barley-Pyrenophora teres f. teres interaction specific to chromosome 6H. Molecular Plant Pathology. doi: 10.1111/mpp.12172
Construction of dense linkage maps "on the fly" using early generation wheat breeding populations Reprint Icon - (Peer Reviewed Journal)
Eckard, J., Gonzales-Hernandez, J., Chao, S., St Amand, P., Bai, G. 2014. Construction of dense linkage maps "on the fly" using early generation wheat breeding populations. Molecular Breeding. doi:10.1007/s11032-014-0116-1.
A SNP genotyping array for hexaploid oat (Avena sativa L.) - (Peer Reviewed Journal)
Tinker, N.A., Chao, S., Lazo, G.R., Oliver, R.E., Huang, Y.-F., Poland, J.A., Jellen, E.N., Maughan, P.J., Kilian, A., Jackson, E.W. 2014. A SNP genotyping array for hexaploid oat (Avena sativa L.). The Plant Genome. doi: 10.3835/plantgenome2014.03.0010. Available: https://www.crops.org/files/publications/tpg/first-look/tpg-2014-03-0010.pdf
Association mapping of grain hardness, polyphenol oxidase, total phenolics, amylose content, and ß-glucan in US barley breeding germplasm - (Peer Reviewed Journal)
Mohammadi, M., Endelman, J.B., Nair, S., Chao, S., Jones, S.S., Muehlbauer, G.J., Ullrich, S.E., Baik, B.-K., Wise, M.L., Smith, K.P. 2014. Association mapping of grain hardness, polyphenol oxidase, total phenolics, amylose content, and ß-glucan in US barley breeding germplasm. Molecular Breeding. DOI 10.1007/s11032-014-0112-5
Mapping of Yr62 and a small effect QTL for high-temperature adult-plant resistance to stripe rust in spring wheat PI 192252 Reprint Icon - (Peer Reviewed Journal)
Lu, Y., Wang, M., Chen, X., See, D.R., Chao, S., Jing, J. 2014. Mapping of Yr62 and a small effect QTL for high-temperature adult-plant resistance to stripe rust in spring wheat PI 192252. Theoretical and Applied Genetics. 127:1449-1459.
Comparative systems biology reveals allelic variation modulating tocochromanol profiles in barley Reprint Icon - (Peer Reviewed Journal)
Oliver, R.E., Islamovic, E., Obert, D.E., Wise, M.L., Herrin, L.L., Hang, A., Harrison, S.A., Ibrahim, A., Marshall, J.M., Miclaus, K.J., Lazo, G.R., Chao, S., Hu, G., Jackson, E. 2014. Comparative systems biology reveals allelic variation modulating tocochromanol profiles in barley. PLoS One. 9:e96276.
Map-based analysis of the tenacious glume gene Tg-B1 of wild emmer and its role in wheat domestication Reprint Icon - (Peer Reviewed Journal)
Faris, J.D., Zhang, Z., Chao, S. 2014. Map-based analysis of the tenacious glume gene Tg-B1 of wild emmer and its role in wheat domestication. Gene. 542:198-208.
The USDA collection of barley landraces and cultivars: genetic diversity, population structure, and potential for genome-wide association studies - (Peer Reviewed Journal)
Munoz-Amatrian, M., Cuesta-Marcos, A., Endelman, J.B., Comadran, J., Bonman, J.M., Bockelman, H.E., Chao, S., Russell, J., Waugh, R., Hayes, P.M., Muehlbauer, G.J. 2014. The USDA collection of barley landraces and cultivars: genetic diversity, population structure, and potential for genome-wide association studies. PLoS One. 9(4):394688. doi:10.137/journal.pone.0094688.
Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array - (Peer Reviewed Journal)
Wang, S., Wong, D., Forrest, K., Allen, A., Chao, S., Huang, B.E., Maccaferri, M., Salvi, S., Milner, S.G., Cattivelli, L., Mastrangelo, A.M., Whan, A., Stephen, S., Barker, G., Wieseke, R., Plieske, J., International Wheat Genome Sequencing Consortium, Lillemo, M., Mather, D., Appels, R., Dulferos, R., Brown-Guedira, G., Korol, A., Akhunova, A.R., Feuillet, C., Salse, J., Morgante, M., Pozniak, C., Luo, M.-C., Dvorak, J., Morell, M., Dubcovsky, J., Ganal, M., Tuberosa, R., Lawley, C., Mikoulitch, I., Cavanagh, C., Edwards, K.J., Hayden, M., Akhunov, E. 2014. Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array. Plant Biotechnology Journal. doi: 10.1111/pbi.12183.
Genome-wide association analysis identified SNPs closely linked to a gene resistant to Soil-borne wheat mosaic virus Reprint Icon - (Peer Reviewed Journal)
Liu, S., Yang, X., Zhang, D., Bai, G., Chao, S., Bockus, W. 2014. Genome-wide association analysis identified SNPs closely linked to a gene resistant to Soil-borne wheat mosaic virus. Theoretical and Applied Genetics. 127:1039-1047.
Development and characterization of wheat lines carrying stem rust resistance gene Sr43 derived from Thinopyrum ponticum Reprint Icon - (Peer Reviewed Journal)
Niu, Z., Klindworth, D.L., Yu, G., Friesen, T.L., Chao, S., Jin, Y., Cai, X., Ohm, J.-B., Rasmussen, J.B., Xu, S.S. 2014. Development and characterization of wheat lines carrying stem rust resistance gene Sr43 derived from Thinopyrum ponticum. Theoretical and Applied Genetics. 127:969-980.
Quantitative trait loci of barley malting quality trait components in the Stellar/01Ab8219 mapping population Reprint Icon - (Peer Reviewed Journal)
Islamovic, E., Obert, D., Budde, A.D., Schmitt, M., Brunick Ii, R., Kilian, A., Chao, S., Lazo, G.R., Marshall, J., Jellen, E., Maughan, P., Hu, G., Esvelt Klos, K.L., Brown, R., Jackson, E. 2014. Quantitative trait loci of barley malting quality trait components in the Stellar/01Ab8219 mapping population. Molecular Breeding. 10.1007/s11032-014-0017-3.
Genetic analysis and molecular mapping of crown rust resistance in common wheat Reprint Icon - (Peer Reviewed Journal)
Niu, Z., Puri, K.D., Chao, S., Jin, Y., Sun, Y., Steffenson, B.J., Maan, S.S., Xu, S.S., Zhong, S. 2013. Genetic analysis and molecular mapping of crown rust resistance in common wheat. Theoretical and Applied Genetics. 127:609-619.
Association mapping of resistance to leaf rust in emmer wheat using high throughput SNP markers - (Abstract Only)
Sun, Q., Elias, E., Chao, S., Xu, S.S., Acevedo, M. 2014. Association mapping of resistance to leaf rust in emmer wheat using high throughput SNP markers [abstract]. Borlaug Summit on Wheat for Food Security, March 25-28, 2014, Ciudad Obregon, Mexico. p. 116.
A genomic comparison of homoeologous recombinants of the Lr19 (T4) translocation in wheat Reprint Icon - (Peer Reviewed Journal)
Somo, M., Chao, S., Acevedo, M., Zurn, J., Cai, X., Marais, F. 2014. A genomic comparison of homoeologous recombinants of the Lr19 (T4) translocation in wheat. Crop Science. 54:565-575.
Chromosome engineering for alien gene introgression in wheat: Progress and prospective - (Abstract Only)
Xu, S.S., Niu, Z., Klindworth, D.L., Zhang, Q.J., Chao, S., Friesen, T.L., Jin, Y., Rouse, M.N., Faris, J.D., Cai, X. 2013. Chromosome engineering for alien gene introgression in wheat: Progress and prospective. Triticeae Cytogenetics: Past, Present and Future, September 15-16, 2013, Kyoto, Japan. p. 24-25.
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landrace and cultivars Reprint Icon - (Peer Reviewed Journal)
Cavanagh, C., Chao, S., Wang, S., Huang, B.E., Stephan, S., Kiani, S., Forrest, K., Saintenac, C., Brown Guedira, G.L., Akhunova, A., See, D.R., Bai, G., Pumphrey, M.O., Tomar, L., Wong, D., Kong, S., Reynolds, M., Lopez Da Silva, M., Bockelman, H.E., Talbert, L., Anderson, J.A., Dreisigacker, S., Baenziger, S., Carter, A., Korzun, V., Morrell, P.L., Dubcovsky, J., Morell, M., Sorrells, M., Hayden, M., Akhunov, E. 2013. Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landrace and cultivars. Proceedings of the National Academy of Sciences. 110:8057-8062.
Use of GoldenGate assay for SNP genotyping in cereal crops - (Peer Reviewed Journal) - (21-Feb-13)
SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species - (Peer Reviewed Journal)
Oliver, R.E., Tinker, N.A., Lazo, G.R., Chao, S., Jellen, E.N., Carson, M.L., Rines, H.W., Obert, D., Lutz, J.D., Shackelford, I., Korol, A.B., Wight, C., Gardner, K.M., Hattori, J., Beattie, A., Bjornstad, A., Bonman, J.M., Jannink, J., Mitchell Fetch, J.W., Harrison, S., Howarth, C.J., Ibrahim, A., Kolb, F.L., McMullen, M.S., Murphy, J.P., Ohm, H., Rossnagel, B.G., Yan, W., Miclaus, K.J., Hiller, J., Maughan, P.J., Redman-Hulse, R.R., Anderson, J.M., Islamovic, E., Jackson, E.W. 2013. SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species. PLoS One. 8:e58068.
The art of attrition: development of robust oat microsatellites - (Peer Reviewed Journal) - (27-Nov-12)
The hordeum toolbox - the barley CAP genotype and phenotype resource - (Peer Reviewed Journal)
Blake, V.C., Kling, J.G., Hayes, P.M., Jannink, J., Jillella, S.R., Lee, J., Matthews, D.E., Chao, S., Close, T.J., Muehlbauer, G.J., Smith, K.P., Wise, R.P., Dickerson, J.A. 2012. The hordeum toolbox - the barley CAP genotype and phenotype resource. The Plant Genome. DOI: 10.385/plantgenome2012.03.0002.
Genetics and mapping of stem rust resistance in MV Zelma winter wheat - (Abstract Only)
Nava, I.C., Rouse, M.N., Chao, S., Jin, Y., Anderson, J.A. 2012. Genetics and mapping of stem rust resistance in MV Zelma winter wheat. Meeting Abstract. In: 2012 BGRI Proceedings ToC.
Identification of a novel gene, H34, in wheat using recombinant inbred lines and single nucleotide polymorphism markers Reprint Icon - (Peer Reviewed Journal)
Li, C., Chen, M., Chao, S., Yu, J., Bai, G. 2012. Identification of a novel gene, H34, in wheat using recombinant inbred lines and single nucleotide polymorphism markers. Theoretical and Applied Genetics. 126:2065-2017.
Genetic mapping analysis of bread-making quality traits in spring wheat Reprint Icon - (Peer Reviewed Journal)
Simons, K., Anderson, J.A., Mergoum, M., Faris, J.D., Klindworth, D.L., Xu, S.S., Sneller, C., Ohm, J.-B., Hareland, G.A., Edwards, M.C., Chao, S. 2012. Genetic mapping analysis of bread-making quality traits in spring wheat. Crop Science. 52:2182-2197.
Identification of markers linked to the Ug99 stem rust resistance gene Sr28 in wheat (Triticum aestivum L.) - (Peer Reviewed Journal)
Rouse, M.N., Nava, I., Chao, S., Jin, Y., Anderson, J. 2012. Identification of markers linked to the Ug99 stem rust resistance gene Sr28 in wheat (Triticum aestivum L.). Theoretical and Applied Genetics. Available: http://www.ncbi.nlm.nih.gov/pubmed/22584633.
Introgression and characterization of a goatgrass gene for a high level of resistance to Ug99 stem rust in tetraploid wheat Reprint Icon - (Peer Reviewed Journal)
Klindworth, D.L., Niu, Z., Chao, S., Friesen, T.L., Jin, Y., Faris, J.D., Cai, X., Xu, S.S. 2012. Introgression and characterization of a goatgrass gene for a high level of resistance to Ug99 stem rust in tetraploid wheat. Genes|Genomes|Genetics. 2:665-673.
Integration of DNA markers with chromosome engineering for efficient introgression of resistance genes from wild grasses into wheat - (Abstract Only)
Xu, S.S., Niu, Z., Klindworth, D.L., Chao, S., Friesen, T.L., Faris, J.D., Jin, Y., Cai, X., Harris, M.O. 2012. Integration of DNA markers with chromosome engineering for efficient introgression of resistance genes from wild grasses into wheat. Meeting Abstract. pg 15.
Fusarium head blight resistance in durum wheat – progress and challenge - (Abstract Only)
Cai, X., Elias, E., Xu, S.S., Kianian, S., Zhong, S., Chao, S. 2011. Fusarium head blight resistance in durum wheat – progress and challenge. Meeting Abstract. pg.12.
Identification and mapping of QTLs for FHB resistance in a synthetic hexaploid wheat line - (Abstract Only)
Zhong, S., Chu, C.G., Xu, S.S., Ali, S., Puri, K.D., Mergoum, M., Chao, S. 2011. Identification and mapping of QTLs for FHB resistance in a synthetic hexaploid wheat line. Meeting Abstract. pg 64.
Development and characterization of wheat lines with Sr37 for stem rust resistance derived from wild Timopheev's wheat - (Abstract Only)
Zhang, Q., Klindworth, D.L., Friesen, T.L., Chao, S., Jin, Y., Cai, X., Xu, S.S. 2012. Development and characterization of wheat lines with Sr37 for stem rust resistance derived from wild Timopheev's wheat. Meeting Abstract. pg 316.
An improved consensus linkage map of barley based on flow-sorted chromosomes and SNP markers - (Peer Reviewed Journal)
Munoz-Amatriain, M., Moscou, M.J., Bhat, P.R., Svensson, J.T., Bartos, J., Suchankova, P., Simkova, H., Endo, T.R., Fenton, R.D., Lonardi, S., Castillo, A.M., Chao, S., Cistue, L., Cuesta-Marcos, A., Forrest, K., Hayden, M.J., Hayes, P.M., Horsley, R.D., Moody, D., Sato, K., Valles, M.P., Wulff, B.B., Muehlbauer, G.J., Dolezel, J., Close, T.J. 2011. An improved consensus linkage map of barley based on flow-sorted chromosomes and SNP markers. The Plant Genome. 4:238-239.
Quantitative Trait Loci influencing endosperm proteins and end-use quality traits of Hard Red Spring Wheat breeding lines - (Peer Reviewed Journal)
Tsilo, T.J., Ohm, J., Hareland, G.A., Chao, S., Anderson, J.A. 2011. Quantitative Trait Loci influencing endosperm proteins and end-use quality traits of Hard Red Spring Wheat breeding lines. Czech Journal of Genetics and Plant Breeding. 47:S190-S195.
Identification and molecular mapping of two QTLs with major effects for resistance to Fusarium head blight in wheat - (Peer Reviewed Journal)
Chu, C., Niu, Z., Zhong, S., Chao, S., Friesen, T.L., Halley, S., Elias, E.M., Dong, Y., Faris, J.D., Xu, S.S. 2011. Identification and molecular mapping of two QTLs with major effects for resistance to Fusarium head blight in wheat. Theoretical and Applied Genetics. 123(7):1107-1119.
Reconstruction of the synthetic W9784 x Opata85 wheat reference population - (Peer Reviewed Journal) - (09-Jun-11)
Whole genome QTL analysis of Stagonospora nodorum blotch resistance and validation of the SnTox4-Snn4 interaction in hexaploid wheat - (Peer Reviewed Journal)
Abeysekara, N., Faris, J.D., Chao, S., Mcclean, P., Friesen, T.L. 2012. Whole genome QTL analysis of Stagonospora nodorum blotch resistance and validation of the SnTox4-Snn4 interaction in hexaploid wheat. Phytopathology. 102:94-104.
Mapping and validation of Yr48 and other QTL conferring partial resistance to broadly virulent post-2000 North American races of stripe rust in hexaploid wheat - (Peer Reviewed Journal)
Lowe, I., Jankuloski, L., Chao, S., Chen, X., See, D.R., Dubcovsky, J. 2011. Mapping and validation of Yr48 and other QTL conferring partial resistance to broadly virulent post-2000 North American races of stripe rust in hexaploid wheat. Theoretical and Applied Genetics. 123:143-157.
Chromosome engineering of wheat stem rust resistance gene Sr47 in a tetraploid wheat background - (Abstract Only)
Klindworth, D.L., Niu, Z., Chao, S., Friesen, T.L., Faris, J.D., Jin, Y., Cai, X., Xu, S.S. 2011. Chromosome engineering of wheat stem rust resistance gene Sr47 in a tetraploid wheat background. Meeting Abstract. pg. 182.
The genetics of winterhardiness in barley: Perspectives from genome-wide association mapping - (Peer Reviewed Journal)
Zitzewitz, J., Condon, F., Corey, A., Cuesta-Marcos, A., Filichkin, T., Haggard, K., Fisk, S.P., Smith, K.P., Muehlbauer, G.J., Karsai, I., Veisz, O., Chao, S., Castro, A.J., Gutierrez, L., Hayes, P.M. 2011. The genetics of winterhardiness in barley: Perspectives from genome-wide association mapping. The Plant Genome. 4:76-91.
Model SNP development based on the complex oat genome using high-throughput 454 sequencing technology Reprint Icon - (Peer Reviewed Journal)
Oliver, R.E., Lazo, G.R., Lutz, J.D., Rubenfield, M.J., Tinker, N.A., Anderson, J.M., Wisniewski-Morehead, N.H., Adhikary, D., Jellen, E.N., Maughan, P.J., Brown Guedira, G.L., Chao, S., Beattie, A.D., Carson, M.L., Rines, H.W., Obert, D.E., Bonman, J.M., Jackson, E.W. 2011. Model SNP development based on the complex oat genome using high-throughput 454 sequencing technology. Biomed Central (BMC) Genomics. 12:77.
Comparative Mapping of the Oregon Wolfe Barley Using Doubled Haploid Lines Derived from Female and Male Gametes - (Peer Reviewed Journal)
Cistué, L., Chao, S., Chutimanitsakun, Y., Corey, A., Cuesta-Marcos, A., Echávarri, B., Filichkina, T., Garcia-Mariño, N., Romagosa, I., Hayes, P.M. 2011. Comparative Mapping of the Oregon Wolfe Barley Using Doubled Haploid Lines Derived from Female and Male Gametes. Theoretical and Applied Genetics. 122:1399-1410.
Population-Specific Patterns of Linkage Disequilibrium and SNP Variation in Spring and Winter Polyploid Wheat - (Peer Reviewed Journal)
Chao, S., Dubcovsky, J., Dvoral, J., Luo, M., Baenziger, S.P., Matnyazov, R., Clark, D.R., Talbert, L., Anderson, J.A., Dreisigacker, S., Glover, K., Chen, J., Campbell, K., Bruckner, P.L., Rudd, J.C., Haley, S., Carver, B.F., Sims, R., Sorrells, M.E., Akhunov, E.D. 2010. Population-Specific Patterns of Linkage Disequilibrium and SNP Variation in Spring and Winter Polyploid Wheat. Biomed Central (BMC) Genomics. 11:727.
Targeted introgression of a wheat stem rust resistance gene by DNA marker-assisted chromosome engineering genetics - (Peer Reviewed Journal)
Niu, Z., Klindworth, D.L., Friesen, T.L., Chao, S., Jin, Y., Cai, X., Xu, S.S. 2011. Targeted introgression of a wheat stem rust resistance gene by DNA marker-assisted chromosome engineering genetics. Genetics. 187(4):1011-1021.
Quantitative Trait Loci Influencing End-use Quality Traits of Hard Red Spring Wheat Breeding Lines - (Peer Reviewed Journal)
Tsilo, T.J., Simsek, S., Ohm, J., Hareland, G.A., Chao, S., Anderson, J.A. 2011. Quantitative Trait Loci Influencing End-use Quality Traits of Hard Red Spring Wheat Breeding Lines. Genome. 54:460-470.
Transcriptome analysis of a breeding program pedigree examines gene expression diversity and reveals target genes for malting quality improvement Reprint Icon - (Peer Reviewed Journal)
Munoz-Amatriain, M., Xiong, Y., Schmitt, M., Bilgic, H., Budde, A.D., Chao, S., Smith, K., Muehlbauer, G. 2010. Transcriptome analysis of a breeding program pedigree examines gene expression diversity and reveals target genes for malting quality improvement. Biomed Central (BMC) Genomics. 11:653.
A novel genome mutation in wheat increases Fusarium Head Blight resistance - (Abstract Only)
Garvin, D.F., Porter, H., Blankenheim, Z., Chao, S., Dill-Macky, R. 2010. A novel genome mutation in wheat increases Fusarium Head Blight resistance [abstract]. In: Proceedings of the 2010 National Fusarium Head Blight Forum, December 7-9, 2010, Milwaukee, Wisconsin. p. 142.
Fighting against FHB – an excellent novel resistance source for future wheat breeding - (Abstract Only)
Chu, C., Zhong, S., Chao, S., Friesen, T.L., Halley, S., Elias, E.M., Faris, J.D., Xu, S.S. 2010. Fighting against FHB – an excellent novel resistance source for future wheat breeding. Meeting Abstract. pg. 14.
Introgression of two major FHB-resistance QTLs into durum and hard red spring wheat - (Abstract Only)
Xu, S.S., Chu, C., Friesen, T.L., Chao, S., Zhong, S., Halley, S., Cai, X., Elias, E.M. 2010. Introgression of two major FHB-resistance QTLs into durum and hard red spring wheat. Meeting Abstract. pg. 172.
Analysis of genetic diversity using SNP markers in oat - (Abstract Only)
Chao, S., Oliver, R.E., Lazo, G.R., Tinker, N., Jannink, J., Redman, R.R., Jackson, E.W. 2011. Analysis of genetic diversity using SNP markers in oat. Meeting Abstract. pg. 209.
Molecular marker-assisted alien gene introgression of Sr39 for wheat stem rust resistance derived from Aegilops speltoides - (Abstract Only)
Niu, Z., Klindworth, D.L., Friesen, T.L., Chao, S., Jin, Y., Cai, X., Xu, S.S. 2011. Molecular marker-assisted alien gene introgression of Sr39 for wheat stem rust resistance derived from Aegilops speltoides. Meeting Abstract. 195.
Genomic selection in plant breeding: knowledge and prospects - (Review Article)
Lorenz, A.J., Chao, S., Asoro, F.G., Heffner, E.L., Hayashi, T., Iwata, H., Smith, K.P., Sorrells, M.E., Jannink, J. 2011. Genomic selection in plant breeding: knowledge and prospects. Advances in Agronomy. 110:77-123.
Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum subsp. durum L.) - (Peer Reviewed Journal)
Simons, K.J., Abate, Z., Chao, S., Zhang, W., Rouse, M., Jin, Y., Elias, E., Dubcovsky, J. 2011. Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum subsp. durum L.). Theoretical and Applied Genetics. 122:649-658.
Large-Scale SNP Marker Development and Genotyping in Oat - (Abstract Only)
Chao, S., Oliver, R.E., Lazo, G.R., Tinker, N., Jackson, E.W. 2010. Large-Scale SNP Marker Development and Genotyping in Oat. Proceedings of The 5th European Oat Conference, September 1-3, 2010, Ystad, Sweden. P.43.
Assessing genetic diversity of Canada thistle (Cirsium arvense) in North America with microsatellites Reprint Icon - (Peer Reviewed Journal)
Bodo Slotta, T.A., Foley, M.E., Chao, S., Hufbauer, R., Horvath, D.P. 2010. Assessing genetic diversity of Canada thistle (Cirsium arvense) in North America with microsatellites. Weed Science. 58:387-394.
Genome-wide Association Mapping of Fusarium Head Blight Resistance in Contemporary Barley Breeding Germplasm - (Peer Reviewed Journal)
Massman, J., Cooper, B., Horsley, R., Neate, S., Dill-Macky, R., Chao, S., Dong, Y., Muehlbauer, G., Smith, K. 2011. Genome-wide Association Mapping of Fusarium Head Blight Resistance in Contemporary Barley Breeding Germplasm. Molecular Breeding. 27:439-454.
Genome Mapping of Kernel Characteristics in Hard Red Spring Wheat Breeding Lines - (Peer Reviewed Journal)
Tsilo, T., Hareland, G.A., Simsek, S., Chao, S., Anderson, J. 2010. Genome Mapping of Kernel Characteristics in Hard Red Spring Wheat Breeding Lines. Theoretical and Applied Genetics 121:717–730
Genetic Mapping and QTL Analysis of Flour Color and Milling Yield Related Traits Using Recombinant Inbred Lines in Hard Red Spring Wheat Reprint Icon - (Peer Reviewed Journal)
Tsilo, T.J., Hareland, G.A., Chao, S., Anderson, J.A. 2011. Genetic Mapping and QTL Analysis of Flour Color and Milling Yield Related Traits Using Recombinant Inbred Lines in Hard Red Spring Wheat. Crop Science. 51:237-246.
Association Mapping of Spot Blotch Resistance in Wild Barley Reprint Icon - (Peer Reviewed Journal)
Roy, J.K., Smith, K.P., Muehlbauer, G.J., Chao, S., Close, T.J., Steffenson, B.J. 2010. Association Mapping of Spot Blotch Resistance in Wild Barley . Molecular Breeding. 26:243-256.
Mike Gale and cereal genetics research in China - (Other)
Jia, J., Liu, C., Wang, D., Chao, S., Wang, M.L., Qi, X. 2010. Mike Gale and cereal genetics research in China. Molecular Breeding. 25:365-367
Marker-assisted Characterization of Durum Wheat Langdon-Golden Ball Disomic Substitution Lines - (Peer Reviewed Journal)
Xu, S.S., Chu, C.G., Chao, S., Klindworth, D.L., Faris, J.D., Elias, E.M. 2010. Marker-assisted Characterization of Durum Wheat Langdon-Golden Ball Disomic Substitution Lines. Theoretical and Applied Genetics.120:1575-1585
Identification of Chromosome Locations of Genes Affecting pre-Harvest Sprouting and Seed Dormancy using Chromosome Substitution Lines in Tetraploid Wheat (Triticum turgidum L.) - (Peer Reviewed Journal)
Chao, S., Xu, S.S., Elias, E., Faris, J.D., Sorrells, M. 2010. Identification of Chromosome Locations of Genes Affecting pre-Harvest Sprouting and Seed Dormancy using Chromosome Substitution Lines in Tetraploid Wheat (Triticum turgidum L.). Crop Science. 50:1180-1187
The WheatCAP Project: Creating Public Long-Term Tools And Capabilities For Wheat Improvement - (Abstract Only)
Soria, M.A., Sherman, J., Anderson, J.A., Baenziger, P., Bai, G., Berzonsky, B., Brown Guedira, G.L., Campbell, K.J., Carver, B.F., Chao, S., Fritz, A., Griffey, C., Haley, S.D., Johnson, J.W., Kianian, S.F., Kidwell, K., Matthews, D.E., Mergoum, M., Ohm, H., Peterson, J., Lizrazu, O., Rudd, J., Talbert, L., Sorrells, M.E., Souza, E.J., Yan, L., Zemetra, R. 2010. The WheatCAP Project: Creating Public Long-Term Tools And Capabilities For Wheat Improvement. Meeting Abstract.
Development and Implementation of High-Throughput SNP Genotyping in Barley Reprint Icon - (Peer Reviewed Journal)
Close, T.J., Bhat, P., Lonardi, S., Wu, Y., Rostoks, N., Ramsay, L., Druka, A., Stein, N., Svensson, J., Wanamaker, S., Bozdag, S., Roose, M., Moscou, M., Chao, S., Varshney, R., Szucs, P., Sato, K., Hayes, P., Matthews, D.E., Kleinhofs, A., Muehlbauer, G., Deyoung, J., Marshall, D.F., Madishetty, K., Fenton, R.D., Condamine, P., Graner, A., Waugh, R. 2009. Development and Implementation of High-Throughput SNP Genotyping in Barley. Biomed Central (BMC) Genomics. 10:582.
Genetic Maps of Stem Rust Resistance Gene Sr13 in Tetraploid Wheat - (Abstract Only)
Simons, K.J., Abate, Z., Chao, S., Zhang, W., Rouse, M., Jin, Y., Dubcovsky, J. 2010. Genetic Maps of Stem Rust Resistance Gene Sr13 in Tetraploid Wheat. Proceedings of Plant and Animal Genome Conference. p. 302, San Diego, CA Jan 9-13, 2010.
Identification of Novel Tan Spot Resistance QTLs Using an SSR-Based Linkage Map of Tetraploid Wheat Reprint Icon - (Peer Reviewed Journal)
Chu, C., Chao, S., Friesen, T.L., Faris, J.D., Zhong, S., Xu, S.S. 2009.Novel Tan Spot Resistance QTLs Detected Using an SSR-Based Linkage Map of Tetraploid Wheat. Molecular Breeding. 25:327-338.
Quantitative Trait Loci Influencing Grain Hardness in Hard Red Spring Wheat Breeding Lines MN98550 and MN99394 - (Abstract Only)
Tsilo, T.J., Hareland, G.A., Chao, S., Simsek, S., Anderson, J.A. 2009. Quantitative Trait Loci Influencing Grain Hardness in Hard Red Spring Wheat Breeding Lines MN98550 and MN99394. Meeting Abstract 167-7
Population structure and linkage disequilibrium in US barley germplasm: implications for association mapping - (Peer Reviewed Journal)
Hamblin, M.T., Close, T.J., Bhat, P.R., Chao, S., Abraham, K., Blake, T., Brooks, W.S., Cooper, B., Griffey, C.A., Hayes, P.M., Hole, D.J., Horsley, R.D., Obert, D.E., Smith, K.P., Ullrich, S.E., Muehlbauer, G.J., Jannink, J. 2010. Population structure and linkage disequilibrium in US barley germplasm: implications for association mapping. Crop Science. 50:556-566.
An integrated resource for barley linkage map and malting quality QTL alignment Reprint Icon - (Peer Reviewed Journal)
Szucs, P., Blake, V.C., Chao, S., Marcos-Cuesta, A., Muehlbauer, G.J., Ramsay, L., Waugh, R., Hayes, P.M. 2009. An integrated resource for barley linkage map and malting quality QTL alignment. The Plant Genome. 2(2):134-140, 2009
Agronomic and Quality Characteristics of Two New Sets of Langdon Durum – wWld Emmer Wheat Chromosome Substitution Lines - (Peer Reviewed Journal)
Klindworth, D.L., Hareland, G.A., Elias, E.M., Faris, J.D., Chao, S., Xu, S.S. 2009. Agronomic and Quality Characteristics of Two New Sets of Langdon Durum – wWld Emmer Wheat Chromosome Substitution Lines. Journal of Cereal Science 50: 29-35
Marker imputation in barley association studies - (Peer Reviewed Journal)
Jannink, J., Iwata, H., Bhat, P.R., Chao, S., Wenzl, P., Muehlbauer, G.J. 2009. Marker imputation in barley association studies. The Plant Genome. 2:11-22.
Haplotype analysis of genes for Fusarium head blight resistance in tetraploid wheat germplasm - (Abstract Only)
Chu, C., Chao, S., Cai, X., Zhong, S., Xu, S.S. 2008. Haplotype analysis of genes for Fusarium head blight resistance in tetraploid wheat germplasm. In: Canty, S.M., E. Walton, A. Clark., D. Ellis. J. Mundell, and D.A. Van Sanford (Eds.), Proceedings of the National Fusarium Head Blight Forum; 2008 Dec 2-4; Indianapolis, IN. Lexington, KY: University of Kentucky. pp.156
Introgression of FHB Resistance from Alien Species-Derived Lines into Spring Wheat - (Abstract Only)
Zhang, Q., Oliver, R.E., Mcarthur, R.I., Chao, S., Stack, R.W., Zhong, S., Xu, S.S., Cai, X. 2008. Introgression of FHB Resistance from Alien Species-Derived Lines into Spring Wheat. Meeting Abstract. In: Canty, S.M., E. Walton, A. Clark., D. Ellis. J. Mundell, and D.A. Van Sanford (Eds.), Proceedings of the National Fusarium Head Blight Forum; 2008 Dec 2-4; Indianapolis, IN. Lexington, KY: University of Kentucky. pp.219
The concurrence of Stagonospora nodorum blotch resistance with host-selective toxin insensitivity in tetraploid wheat - (Abstract Only)
Chu, C., Friesen, T.L., Chao, S., Faris, J.D., Xu, S.S. 2008. The concurrence of Stagonospora nodorum blotch resistance with host-selective toxin insensitivity in tetraploid wheat. National Wheat Genomics Conference. p. 9 (NWGC), December 4-6, 2008, Indianapolis, IN
Identification and validation of SSR markers linked to the stem rust resistance gene Sr6 on the short arm of chromosome 2D in wheat Reprint Icon - (Peer Reviewed Journal)
Tsilo, T., Chao, S., Jin, Y., Anderson, J. 2009. Identification and validation of SSR markers linked to the stem rust resistance gene Sr6 on the short arm of chromosome 2D in wheat. Theoretical and Applied Genetics. 118:515-524
New DNA Markers for High Molecular Weight Glutenin Subunits in Wheat Reprint Icon - (Peer Reviewed Journal)
Liu, S., Chao, S., Anderson, J.A. 2008. New DNA Markers for High Molecular Weight Glutenin Subunits in Wheat. Theoretical and Applied Genetics. 118:177-183
QTL Analysis of Pasta Quality using a Composite Microsatellite - SNP Map of Durum Wheat Reprint Icon - (Peer Reviewed Journal)
Zhang, W., Chao, S., Manthey, F., Chicaiza, O., Brevis, J.C., Echenique, J., Dubcovsky, J. 2008. Qtl analysis of pasta quality using a composite microsatellite - snp map of durum wheat. Theoretical and Applied Genetics. 117:1361-1377
A region of barley chromosome 6H harbors multiple major genes associated with net type blotch resistance. Reprint Icon - (Peer Reviewed Journal)
Abu, Q.M., Liu, Z., Faris, J.D., Chao, S., Edwards, M.C., Lai, Z., Franckowiak, J.D., Friesen, T.L. 2008. A region of barley chromosome 6H harbors multiple major genes associated with net type blotch resistance. Theoretical and Applied Genetics. 117:1261-1270
Chromosome Location and Characterization of Genes for Grain Protein Content in Triticum dicoccoides - (Proceedings)
Xu, S.S., D.L. Klindworth, G.A. Hareland, E.M. Elias, J.D. Faris, and S. Chao. 2008. Chromosome location and characterization of genes for grain protein content in Triticum dicoccoides. In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Int. Wheat Genet. Symp., vol. 2. Sydney University Press, Sydney, Australia. Pp 572-574.
Analysis of gene-derived SNP marker polymorphism in wheat (Triticum aestivum L.) - (Peer Reviewed Journal)
Chao, S., Zhang, W., Akhunov, E., Sherman, J., Ma, Y., Luo, M., Dubcovsky, J. 2008. Analysis of gene-derived SNP marker polymorphism in wheat (Triticum aestivum L.). Molecular Breeding. 23:23-33
Genomic analysis of the Snn1 locus on wheat chromosome arm 1BS and the identification of candidate genes Reprint Icon - (Peer Reviewed Journal)
Reedy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Faris, J.D. 2008. Genomic analysis of the Snn1 locus on wheat chromosome arm 1BS and the identification of candidate genes. The Plant Genome. 1:55-66
Origin of barley accessions with multiple disease resistance determined by SSR analysis. Reprint Icon - (Abstract Only)
Bonman, J.M., Gu, Y., Coleman Derr, D., Jackson, E.W., Chao, S., Bockelman, H.E. 2008. Origin of barley accessions with multiple disease resistance determined by SSR analysis.. International Congress of Plant Pathology Abstracts and Proceedings.
Analysis of gene-derived SNP marker polymorphism in wheat (Triticum aestivum L.) - (Abstract Only)
Chao, S., Zhang, W., Akhunov, E., Sherman, J., Ma, Y., Luo, M., Dvorak, J., Dubcovsky, J. Analysis of gene-derived SNP marker polymorphism in wheat (Triticum aestivum L.). Plant and Animal Genome Conference. p. 157
Wheat-rice colinearity and chromosome walking at the Snn1 locus in wheat - (Abstract Only)
Reddy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Scofield, S.R., Faris, J.D. 2007. Wheat-rice colinearity and chromosome walking at the Snn1 locus in wheat. Meeting Abstract. National Wheat Genomics Conference Abstracts. pg 28
Genetic analysis of host-toxin interactions in the wheat-Stagonospora nodorum pathosystem - (Abstract Only)
Faris, J.D., Friesen, T.L., Lu, H., Reddy, L., Zhang, Z., Liu, Z., Xu, S.S., Meinhardt, S.W., Fellers, J.P., Oliver, R.P., Solomon, P.S., Chao, S., Chu, C., Abeysekara, N., Scofield, S.R. 2007. Genetic analysis of host-toxin interactions in the wheat-Stagonospora nodorum pathosystem. Meeting Abstract. National Wheat Genomics Conference abstracts pg. 11
High throughput tissue preparation for large-scale genotyping experiments Reprint Icon - (Peer Reviewed Journal)
Boda Slotta, T.A., Brady, L., Chao, S. 2008. High throughput tissue preparation for large-scale genotyping experiments. Molecular Ecology Resources. 8:83-87
Molecular Breeding Using a Major QTL for Fusarium Head Blight Resistance in Wheat - (Peer Reviewed Journal)
Anderson, J.A., Chao, S., Liu, S. 2008. Molecular Breeding Using a Major QTL for Fusarium Head Blight Resistance in Wheat. Crop Science. 47(3):S112-S119
ITEMS FROM NORTH DAKOTA: USDA-ARS CEREAL CROPS RESEARCH UNIT - (Other)
Faris, J.D., Xu, S.S., Friesen, T.L., Klindworth, D.L., Simons, K.J., Chao, S. 2007. Items from north dakota: usda-ars cereal crops research unit. 2007 Annual Wheat Newsletter. pg. 141-148
EVALUATION OF GENETIC DIVERSITY AND GENOME-WIDE LINKAGE DISEQUILIBRIUM AMOUNG US WHEAT (TRITICUM AETIVUM L.) GERMPLASM REPRESENTING DIFFERENT MARKET CLASSES - (Peer Reviewed Journal)
Chao, S., Zhang, W., Dubcovsky, J., Sorrells, M. 2007. Evaluation of genetic diversity and genome-wide linkage disequilibrium amoung U.S. wheat (Triticum aetivum L.) germplasm representing different market classes. Crop Science. 47:1018-1030.
Evaluation of genetic diversity and genome-wide linkage disequilibrium among US wheat (Triticum aestivum L.) germplasm representing different market classes - (Abstract Only)
Chao, S., Zhang, W., Dubcovsky, J., Sorrells, M. 2007. Evaluation of genetic diversity and genome-wide linkage disequilibrium among US wheat (Triticum aestivum L.) germplasm representing different market classes. Plant and Animal Genome VX Conference Abstracts. p. 168.
Genomic analysis of the Snn1 locus on the short arm of chromosome 1B in wheat - (Abstract Only)
Reddy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Faris, J.D. 2007. Genomic analysis of the Snn1 locus on the short arm of chromosome 1B in wheat. Plant and Animal Genome VX Conference Abstracts. p. 176.
APPLICATION OF MOLECULAR MARKER TECHNOLOGIES ON CEREAL CROPS IMPROVEMENT - (Abstract Only)
Chao, S. 2006. Application of molecular marker technologies on cereal crops improvement. American Oat Workers Conference, July 23-25, Fargo, ND.
USE OF A LARGE-SCALE TRITICEAE EST RESOURCE TO REVEAL GENE EXPRESSION PROFILES IN HEXAPLOID WHEAT (TRITICUM AESTIVUM L.) - (Peer Reviewed Journal)
Chao, S., Lazo, G.R., You, F., Crossman, C.C., Hummel, D.D., Lui, N., Laudencia-Chingcuanco, D., Anderson, J.A., Close, T.J., Dubcovsky, J., Gill, B.S., Gill, K.S., Gustafson, J.P., Kianian, S.F., Lapitan, N.L.V., Nguyen, H.T., Sorrells, M.E., McGuire, P.E., Qualset, C.O., Anderson, O.D. 2006. Use of a large-scale Triticeae expressed sequence tag resource to reveal gene expression profiles in hexaploid wheat (Triticum aestivum L.). Genome. 49:531-544 (2006).
USE OF HIGH THROUGHPUT MARKER TECHNOLOGIES FOR MARKER-ASSISTED BREEDING IN WHEAT AND BARLEY. - (Abstract Only)
Chao, S., Anderson, J.A., Glover, K., Smith, K. 2006. Use of high throughput marker technologies for marker-assisted breeding in wheat and barley [abstract]. Plant and Animal Genome XIV Conference. Abstract No. W43:17.
QTLS FOR SEMOLINA AND PASTA COLOR IN DURUM WHEAT - (Abstract Only)
Zhang, W., Echenique, V., Manthey, F., Helguera, M., Chao, S., Dubcovsky, J. 2006. QTLs for semolina and pasta color in durum wheat [abstract]. Plant and Animal Genome XIV Conference. Abstract No. P321:181.
A COST-EFFECTIVE HIGH THROUGHPUT GENOTYPING METHODS - (Abstract Only)
Brady, L.M., Anderson, J., Smith, K., Chao, S. 2005. A cost-effective high throughput genotyping methods, page 18. National Fusarium Head Blight Forum Proceedings, Dec 11-13, 2005, Milwaukee, WI.
DEVELOPMENT OF AN EXPRESSED SEQUENCE TAG (EST) RESOURCE FOR WHEAT (TRITICUM AESTIVUM L.): EST GENERATION, UNIGENE ANALYSIS, PROBE SELECTION, AND BIOINFORMATICS FOR A 16,000-LOCUS BIN-DELINEATED MAP - (Peer Reviewed Journal)
Lazo, G.R., Chao, S., Hummel, D.H., Edwards, H., Crossman, C.C., Lui, N., Matthews, D.E., Carollo, V.L., Hane, D., You, F.M., Butler, E., Miller, R., Close, T.J., Peng, J., Lapitan, N.V., Gustafson, J.P., Qi, L.L., Echalier, B., Gill, B.S., Dilbirligi, M., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K.G., Kianian, S.F., Mahmoud, A., Miftahudin, Ma, X., Wennerlind, E.J., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Anderson, O.D. 2004. Development of an expressed sequence tag (est) resource for wheat (triticum aestivum l.): est generation, unigene analysis, probe selection, and bioinformatics for a 16,000-locus bin-delineated map. Genetics. 168:585-593.
A CHROMOSOME BIN MAP OF 16,000 EST LOCI AND DISTRIBUTION OF GENES AMONG THE THREE GENOMES OF POLYPLOID WHEAT - (Peer Reviewed Journal)
Qi, L.L., Echalier, B., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Ratnasiri, A., Dubcovsky, J., Bermudez-Kandianis, C.E., Greene, R.A., Kantety, R., La Rota, M., Munkvold, J.D., Sorrells, S.F., Sorrells, M.E., Dilbirligi, M., Sidhu, D., Eryman, M., Randhawa, H.S., Sandhu, D., Bondareva, S., Gill, K.S., Mahmoud, A., Ma, X., Miftahudin, Gustafson, J.P., Wennerlind, E.J., Nduati, V., Gonzalez-Hernandez, J.L., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Pathan, M.S., Zhang, D., Nguyen, H.T., Choi, D.W., Close, T.J., Mcguire, P.E., Qualset, C.O., Gill, B.S. 2004. A chromosome bin map of 16,000 est loci and distribution of genes among the three genomes of polyploid wheat. Genetics. 168:701-712.
CHROMOSOME BIN MAP OF EXPRESSED SEQUENCE TAGS IN HOMOEOLOGOUS GROUP 1 OF HEXAPLOID WHEAT AND HOMOEOLOGY WITH RICE AND ARABIDOPSIS - (Peer Reviewed Journal)
Peng, J., Zadeh, H., Lazo, G.R., Gustafson, J.P., Chao, S., Anderson, O.D., Qi, L.L., Echalier, B., Gill, B.S., Dilbirligi, M., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K., Kianian, S.F., Mahmoud, A., Miftahudin, Wennerlind, E., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Lapitan, N.V. 2004. Chromosome bin map of expressed sequence tags in homoeologous group 1 of hexaploid wheat and homoeology with rice and arabidopsis. Genetics. 168:609-623.
A 2500-LOCUS BIN MAP OF WHEAT HOMOEOLOGOUS GROUP 5 PROVIDES INSIGHTS ON GENE DISTRIBUTION AND COLINEARITY WITH RICE - (Peer Reviewed Journal)
Linkiewicz, A.M., Qi, L.L., Gill, B.S., Echalier, B., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Akhunov, E.D., Dvorak, J., Pathan, M.S., Nguyen, H.T., Peng, J., Lapitan, N.V., Miftahudin, Gustafson, J.P., La Rota, C.M., Sorrells, M.E., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Wennerlind, E., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Dubcovsky, J. 2004. A 2500-locus bin map of wheat homoeologous group 5 provides insights on gene distribution and colinearity with rice. Genetics. 168:665-676.
A 2600-LOCUS CHROMOSOME BIN MAP OF WHEAT HOMOEOLOGOUS GROUP 2 REVEALS INTERSTITIAL GENE-RICH ISLANDS AND COLINEARITY WITH RICE - (Peer Reviewed Journal)
Wennerlind, E., Nduati, V., Gonzalez-Hernandez, J.L., Mesfin, A., Trudeau-Spanjers, M., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Qi, L.L., Gill, B.S., Echalier, B., Linkiewicz, A.M., Akhunov, E.D., Dubcovsky, J., Peng, J., Lapitan, N.V., Zhang, D., Nguyen, H.T., Miftahudin, Gustafson, J.P., Greene, R.A., Sorrells, M.E., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Sidhu, D., Dilbirligi, M., Gill, K.S., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Anderson, J.A. 2004. A 2600-locus chromosome bin map of wheat homoeologous group 2 reveals interstitial gene-rich islands and colinearity with rice. Genetics. 168:625-637.
DELETION MAPPING OF HOMOEOLOGOUS GROUP 6-SPECIFIC WHEAT ESTS - (Peer Reviewed Journal)
Randhawa, H.S., Dilbirligi, M., Sidhu, D., Erayman, M., Sandhu, D., Bondareva, S., Chao, S., Lazo, G.R., Anderson, O.D., Miftahudin, Gustafson, J.P., Echalier, B., Qi, L.L., Gill, B.S., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Bermudez-Kandianis, C.E., Greene, R.A., Sorrells, M.E., Wennerlind, E., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K.S., Kianian, S.F., Pathan, M.S., Nguyen, H.T., Endo, T.R., Close, T.J., Mcguire, P., Qualset, C.O., Gill, K.S. 2004. Deletion mapping of homoeologous group 6-specific wheat ests. Genetics. 168:677-686.
A CHROMOSOME BIN MAP OF 2148 EST LOCI OF WHEAT HOMOEOLOGOUS GROUP 7 - (Peer Reviewed Journal)
Hossain, K.G., Kalavacharla, V., Lazo, G.R., Hegstad, J., Wentz, M.J., Simons, K., Gehlhar, S., Rust, J.L., Syamala, R.R., Obeori, K., Suresh, B., Karunadharma, P., Chao, S., Anderson, O.D., Qi, L.L., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Sidhu, D., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N.V., Bermudez-Kandianis, C.E., Sorrells, M.E., Feril, O., Pathan, M.S., Nguyen, H.T., Gonzalez-Hernandez, J.L., Wennerlind, E., Anderson, J.A., Fenton, D., Close, T.J., Mcguire, P.E., Qualset, C.O., Kianian, S.F. 2004. A chromosome bin map of 2148 est loci of wheat homoeologous group 7. Genetics. 168:687-699.
GROUP 3 CHROMOSOME BIN MAPS OF WHEAT AND THEIR RELATIONSHIP TO RICE CHROMOSOME 1 - (Peer Reviewed Journal)
Munkvold, J.D., Greene, R.A., Bermudez-Kandianis, C.E., La Rota, C.M., Edwards, H., Sorrells, S.F., Dake, T., Benscher, D., Kantety, R., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Pathan, M.S., Nguyen, H.T., Matthews, D.E., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Anderson, J.A., Gonzalez-Hernandez, J.L., Peng, J., Lapitan, N.V., Qi, L.L., Echalier, B., Gill, B.S., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Sandhu, D., Eryman, M., Gill, K.S., Mcguire, P.E., Qualset, C.O., Sorrells, M.E. 2004. Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1. Genetics. 168:639-650.
CONSTRUCTION AND EVALUATION OF CDNA LIBRARIES FOR LARGE SCALE EST SEQUENCING IN WHEAT (TRITICUM AESTIVUM L.) - (Peer Reviewed Journal)
Zhang, D., Choi, D.W., Wanamaker, S., Fenton, R.D., Chin, A., Malatrasi, M., Turuspekov, Y., Walia, H., Akhunov, E., Kianian, P., Otto, C., Simons, K., Deal, K., Echenique, V., Stamova, B., Ross, K., Butler, E., Doherty, L., Verhey, S.D., Johnson, R., Altenbach, S.B., Kothari, K.M., Tanaka, C.K., Shah, M.M., Chingcuanco, D.L., Gitt, M.A., Pham, J., Han, P., Miller, R.E., Crossman, C.C., Chao, S., Lazo, G.R., Klueva, N., Gustafson, J.P., Kianian, S.F., Dubcovsky, J., Walker-Simmons, M.K., Gill, K.S., Dvorak, J., Anderson, O.D., Mcguire, P., Qualset, C.O., Nguyen, H.T., Close, T.J. 2004. Construction and evaluation of cdna libraries for large scale est sequencing in wheat (triticum aestivum l.). Genetics. 168:595-608.
ANALYSIS OF EST LOCI ON WHEAT CHROMOSOME GROUP 4 - (Peer Reviewed Journal)
Miftahudin, Ross, K., Ma, X., Mahmoud, A., Layton, J., Rodriguez, M., Chikmawati, T., Ramalingam, J., Feril, O., Pathan, M.S., Surlan-Momirovic, G., Kim, S., Chema, K., Fang, P., Haule, L., Struxness, H., Birkes, J., Yaghoubian, C., Kinner, R.S., Nguyen, V., Qi, L.L., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Dilbirligi, M., Gill, K.S., Peng, J., Lapitan, N.V., Bermudez-Kandianis, C.E., Sorrells, M.E., Hossain, K.G., Kalavacharla, V., Kianian, S.F., Lazo, G.R., Chao, S., Anderson, O.D., Gill, B.S., Gonzalez, J., Wennerlind, E., Anderson, J.A., Choi, D.W., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Nguyen, H.T., Gustafson, J.P. 2004. Analysis of est loci on wheat chromosome group 4. Genetics. 168:651-663.
SYNTENY PERTURBATIONS BETWEEN WHEAT HOMOEOLOGOUS CHROMOSOMES CAUSED BY LOCUS DUPLICATIONS AND DELETIONS CORRELATE WITH RECOMBINATION RATES ALONG CHROMOSOME ARMS - (Peer Reviewed Journal)
Akhunov, E.D., Akhunov, A.R., Linkiewicz, A.M., Dubcovsky, J., Hummel, D., Lazo, G.R., Chao, S., Anderson, O.D., David, J., Qi, L., Echalier, B., Gill, B.S., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Kalavacharla, V., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Wennerlind, E.J., Nduati, V., Anderson, J.A., Sidhu, D., Gill, K.S., Mcguire, P.E., Qualset, C.O., Dvorak, J. 2003. Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates along chromosome arms. Proceedings of the National Academy of Sciences. 100:10836-10841.
GC COMPOSITION AND CODON USAGE IN GENES OF INBREEDING AND OUTCROSSING TRITICEAE SPECIES - (Abstract Only)
Akhunov, E.D., David, J.L., Chao, S., Lazo, G.R., Anderson, O.D., Qi, L., Echalier, B., Gill, B.S., Linkiewicz, A.M., Dubcovsky, J., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Sidhu, D., Gill, K.S., Mcguire, P.E., Qualset, C.O., Dvorak, J. 2003. Gc composition and codon usage in genes of inbreeding and outcrossing triticeae species. In: Proceedings of International Wheat Genetics Symposium, September 1-6, 2003, Paestum, Italy. p. 203-206.
A TWO-THOUSAND LOCI PHYSICAL MAP OF WHEAT HOMOEOLOGOUS GROUP 5 - (Abstract Only)
Linkiewicz, A.M., Qi, L., Echalier, B., Gill, B.S., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., La Rota, C.M., Sorrells, M.E., Hossain, K., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Zhang, D., Nguyen, H.T., Wennerlind, E., Peng, J., Lapitan, N., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Dubcovsky, J. 2003. A two-thousand loci physical map of wheat homoeologous group 5. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 986-988.
NEW INSIGHTS INTO THE ORGANIZATION AND EVOLUTION OF WHEAT GENOMES - (Proceedings)
Dvorak, J., Akhunov, E.D., Akhunov, A.R., Luo, M., Linkiewicz, A.M., Dubcovsky, J., Hummel, D., Lazo, G.R., Chao, S., Anderson, O.D., David, J., Qi, L., Echalier, B., Gill, B.S., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Kalavacharla, V., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Wennerlind, E.J., Nduati, V., Anderson, J.A., Sidhu, D., Gill, K.S., Choi, D., Close, T.J., Mcguire, P.E., Qualset, C.O. 2003. New insights into the organization and evolution of wheat genomes. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 248-253.
A TRANSCRIPTOME MAP OF WHEAT - (Abstract Only)
Gill, B.S., Qi, L., Echalier, B., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Bermidez-Kandianis, C.E., Greene, R.A., La Rota, M., Sorrells, M.E., Dilbirligi, M., Sidhu, D., Eryman, M., Gill, K.S., Miftahudin, Ma, X., Mahmoud, A., Gustafson, J.P., Wennerlind, E.J., Nduati, V., Gonzalez-Hernandez, L., Anderson, J.A., Peng, J., Lapitan, N.V., Hossain, K., Kalavacharla, V., Kianian, S.F., Pathan, M.S., Nguyen, H.T., Choi, D., Close, T.J., Mcguire, P.E., Qualset, C.O. 2003. A transcriptome map of wheat. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p. 261-264.
A PHYSICAL MAP OF EXPRESSED SEQUENCE TAGS AND FUNCTIONAL GENOMICS IN THE GROUP I CHROMOSOMES OF WHEAT, TRITICUM AESTIVUM - (Abstract Only)
Peng, J.H., Zadeh, H., Lazo, G.R., Qi, L., Echalier, B., Gill, B.S., Chao, S., Anderson, O.D., Sandhu, D., Gill, K.S., Greene, R.A., Sorrells, M.E., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Hossain, K., Kianian, S.F., Miftahudin, Gustafson, J.P., Wennerlind, E., Anderson, J.A., Pathan, M.S., Nguyen, H.T., Mcguire, P.E., Qualset, C.O., Lapitan, N.V. 2003. A physical map of expressed sequence tags and functional genomics in the group i chromosomes of wheat, triticum aestivum. In: Proceedings of the Wheat Genetics International Symposium, September 1-6, 2003, Paestum, Italy. p.1035-1037.
THE USE OF ESTS TO ANALYZE THE SPECTRUM OF WHEAT SEED PROTEINS - (Proceedings)
Anderson, O., Carollo, V., Chao, S., Laudencia-Chingcuanco, D., Lazo, G. 2004. The Use of ESTs to Analyze the Spectrum of Wheat Seed Proteins. Proceedings-8th Gluten Workshop. p. 18-21.
DELETION MAPPING OF EXPRESSED SEQUENCE TAGS AND FUNCTIONAL GENOMICS IN THE GROUP 1 CHROMOSOMES OF WHEAT, TRITICUM AESTIVUM - (Abstract Only)
Peng, J., Zadeh, H., Qi, L., Echalier, B., Gill, B.S., Chao, S., Lazo, G.R., Anderson, O.D., Akhunov, E.D., Dvorak, J., Linkiewicz, A.M., Dubcovsky, J., Miftahudin, Gustafson, J.P., Dake, T., Sorrells, M.E., Hossain, K., Kalavacharla, V., Kianian, S.F., Dilbirligi, M., Gill, K.S., Zhang, D., Nguyen, H.T., Wennerlind, E., Anderson, J.A., Fenton, R.D., Close, T.J., Mcguire, P.E., Qualset, C.O., Lapitan, N. 2003. Deletion mapping of expressed sequence tags and functional genomics in the group 1 chromosomes of wheat, triticum aestivum [abstract]. XI Plant and Animal Genome Conference. p. 164.
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