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United States Department of Agriculture

Agricultural Research Service

Animal Gene Mapping & Transfer
item The use of PacBio and Hi-C data in denovo assembly of the goat genome (Nov 2015)
item Applying ultrasonographic evaluation of antral follicle count to improve reproductive management in heifers (Sep 2015)
item Mechanisms influencing establishment of the ovarian reserve in heifers (Sep 2015)
item Microbial community profiles of the colon from steers differing in feed efficiency (Aug 2015)
item Comparison of domestic and foreign genotypes by country and continent (Aug 2015)
item Re-examination of service-sire conception rates in the United States (Aug 2015)
item Strategies to choose from millions of imputed sequence variants (Aug 2015)
item Revisiting the “a posteriori” granddaughter design (Aug 2015)
item Genomic evaluations and breed composition for crossbred U.S. dairy cattle (Aug 2015)
item Lysozyme as an alternative to growth promoting antibiotics in swine production (Aug 2015)
item Measurements of body composition during late gestation and lactation in first and second parity sows and its relationship to piglet production and post-weaning reproductive performance (Aug 2015)
item The role of RFamide-related peptide 3 (RFRP3) in regulation of the neuroendocrine reproductive and growth axes of the boar (Aug 2015)
item Removal of ruminal contents followed by restricted feeding does not affect the frequency of luteinizing-hormone pulses in steers (Aug 2015)
item Transcriptome variation in response to Marek’s disease virus acute infection (Jul 2015)
item Fast imputation using medium or low-coverage sequence data (Jul 2015)
item Genome-wide copy number variations using SNP genotyping in a mixed breed swine population (Jul 2015)
item Genetic interactions for heat stress and production level: predicting foreign from domestic data (Jul 2015)
item Assignment of polled status using single nucleotide polymorphism genotypes and predicted gene content (Jul 2015)
item Effect of increasing the number of single-nucleotide polymorphisms from 60,000 to 85,000 in genomic evaluation of Holsteins (Jul 2015)
item Selection signature analysis in Holstein cattle identified genes known to affect reproduction (Jul 2015)
item Genome-wide association study of fertility traits in dairy cattle using high-density single nucleotide polymorphism marker panels (Jul 2015)
item Identification of gene networks underlying dystocia in dairy cattle (Jul 2015)
item Using routinely recorded herd data to predict and benchmark herd and cow health status (Jul 2015)
item Genomic evaluation, breed identification, and population structure of North American, English and Island Guernsey dairy cattle (Jul 2015)
item Practical implications for genetic modeling in the genomics era for the dairy industry (Jul 2015)
item Identification of copy number variable gene families in Holstein and Jersey cattle (Jul 2015)
item Animal selection for whole genome sequencing by quantifying the unique contribution of homozygous haplotypes sequenced (Jul 2015)
item Single nucleotide polymorphisms in specific candidate genes are associated with phenotypic differences in days open for first lactation in Holstein cows (Jul 2015)
item The relationship between runs of homozygosity and inbreeding in Jersey cattle under selection (Jul 2015)
item Influence of estrus expression prior to fixed-time AI on embryo survival to maternal recognition of pregnancy (Jul 2015)
item Age at puberty, ovulation rate, and uterine length of developing gilts fed two lysine and three metabolizable energy concentrations from 100 to 260 d of age (Jul 2015)
item The role of gut peptides in the gut-brain-axis of livestock (Jul 2015)
item Effects of glycerin concentration in steam-flaked corn-based diets with supplemental yellow grease on performance and carcass characteristics of finishing beef steers (Jul 2015)
item Use of ultrasonography to make management decisions (Jul 2015)
item Effect of backgrounding system on beef calf performance (Jul 2015)
item In vitro fertilization (IVF) from low or high antral follicle count pubertal beef heifers using semi-defined culture conditions (Jul 2015)
item Association between circulating blood or plasma urea nitrogen concentrations and reproductive efficiency in beef heifers and cows (Jul 2015)
item Growth curve analysis of placental and fetal growth influenced by adjacent fetal sex status under crowded uterine conditions in pigs (Jul 2015)
item Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall sythesis, represses lignification, and prolongs elongation (Jun 2015)
item Dietary lysine affected the expression of genes related to lipid metabolism in skeletal muscle of finishing pigs (Jun 2015)
item Transcription profile of boar spermatozoa as revealed by RNA-sequencing (Jun 2015)
item Impact of maternal nutritional level on progeny ovarian development and fertility in cattle (Jun 2015)
item A thermophilic phage endolysin fusion to a Clostridium perfringens-specific cell wall binding domain creates an anti-clostridium antimicrobial with improved thermostability (Jun 2015)
item Vascular Endothelial Growth Factor A 165 (VEGFA165), angiogenic isoform, promotes while VEGFA165b antagonizes VEGFA165 stimulated follicular progression in bovine ovarian cortical pieces cultured from pre-pubertal heifers (Jun 2015)
item Granulosa cell cycle regulation and steroidogenesis in a high androstenedione follicular microenvironment (Jun 2015)
item Bacteriophage phi11 lysin: physicochemical characterization and comparison with phage phi80a lysin (Jun 2015)
item Development of pre-implantation porcine embryos cultured within a three-dimensional alginate hydrogel system either conjugated with Arg-Gly-Asp (RGD) peptide or supplemented with secreted phosphoprotein 1 (SPP1) (Jun 2015)
item A putative role for GnRH-II and its receptor in spermatogenic function of boars (Jun 2015)
item Can we make the pig placenta work better? (Jun 2015)
item Pig endometrium expresses the polyol pathway enzymes necessary to convert glucose to fructose prior to implantation with a shift to chorion expression post-implantation (Jun 2015)
item Rumen microbiome from steers differing in feed efficiency (Jun 2015)
item Relationships between day one piglet serum immunoglobulin immunocrit and subsequent growth, puberty attainment, litter size, and lactation performance (Jun 2015)
item BAC-end sequence-based SNP mining in Allotetraploid Cotton (Gossypium) utilizing re-sequencing data, phylogenetic inferences and perspectives for genetic mapping (Jun 2015)
item Profiling of relaxin and its receptor proteins in boar reproductive tissues and spermatozoa (May 2015)
item Porcine models of muscular dystrophy (May 2015)
item Genomic prediction of disease occurrence using producer-recorded health data: A comparison of methods (May 2015)
item Improving accuracy of North American and Danish Jersey genomic evaluations by sharing reference population bulls (May 2015)
item Effect of reference population size and available ancestor genotypes on imputation of Mexican Holstein genotypes (May 2015)
item Methane production and methanogen levels in steers that differ in residual gain (May 2015)
item Contributions…uterine environment and piglet genotype on weaning survivability potential: II. Piglet growth, lactation performance, milk composition…blood profiles…lactation…reciprocal embryo transfers…Meishan and White…gilts (May 2015)
item Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection (Apr 2015)
item Complete genome sequence of Aeromonas hydrophila AL06-06 (Apr 2015)
item Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement (Apr 2015)
item Histone modifications induced by MDV infection at early cytolytic and latency phases (Apr 2015)
item Levels of taurine introgression in the current Brazilian Nelore and Gir indicine cattle populations (Apr 2015)
item Recent artificial selection in U.S. Jersey cattle impacts autozygosity levels of specific genomic regions (Apr 2015)
item Intronic deletions of tva receptor gene decrease the susceptibility to infection by subgroup A avian sarcoma and leukosis virus subgroup A (Apr 2015)
item Magentic Cell labeling of primary and stem cell-derived pig hepatocytes for MRI-based cell tracking of heptocytes transplantation (Apr 2015)
item Development of microsatellites from Fothergilla xintermedia (Hamamelidaceae) and cross transfer to four other genera within Hamamelidaceae (Apr 2015)
item Comparison of Bayesian models to estimate direct genomic values in multi-breed commercial beef cattle (Apr 2015)
item Can we build the cowherd by increasing longevity of females? (Apr 2015)
item Short communication: Analysis of genomic predictor population for Holstein dairy cattle in the United States – Effects of sex and age (Apr 2015)
item Effects of maternal nutrition and arginine supplementation on postnatal liver and jejunal oxygen consumption and hypothalamic neuropeptide content in ovine offspring (Apr 2015)
item Optimal dietary energy and amino acids for gilt development: Growth, body composition, feed intake, and carcass composition traits (Mar 2015)
item Beneficial effects of relaxin on motility characteristics of stored boar spermatozoa (Mar 2015)
item Lectin-functionalized magnetic iron oxide nanoparticles for reproductive improvement (Mar 2015)
item Impact of genomic collaboration and the need to continually improve methods (Mar 2015)
item Effects of quantitative trait loci on mineral content 1 of bovine longissimus dorsi muscle (Mar 2015)
item Near infrared reflectance spectroscopy studies of Chinese giant salamanders in aquaculture production (Mar 2015)
item Beef cattle metabiomes and their relationships with economically important phenotypes (Mar 2015)
item Metabolomic differences in early and late lactation first-parity gilts (Mar 2015)
item Post-weaning nutritional programming of ovarian development in beef heifers (Mar 2015)
item Seasonal and cryopreservation impacts on semen quality in boars (Mar 2015)
item Changes in leptin and metabolite concentrations over time in finishing beef steers and heifers (Mar 2015)
item Effects of sire breed, gender, and postnatal litter size on plasma concentrations of acyl ghrelin and its relationship with growth traits and feeding behavior in swine (Mar 2015)
item Differential expression of genes in the jejunum of steers with feed efficiency phenotypes (Mar 2015)
item Rapid calculation of genomic evaluations for new animals (Mar 2015)
item Growth and body composition, feed intake, and carcass composition traits of developing gilts fed different dietary lysine and metabolizable energy levels (Mar 2015)
item Age at puberty, ovulation rate, and reproductive tract traits of developing gilts fed two lysine levels and three metabolizable energy levels from 100 to 260 d of age (Mar 2015)
item Relationship between pre-weaning gain, age at puberty, and reproductive tract development in Angus heifers (Mar 2015)
item Genomewide association study of lung lesions in cattle using sample pooling (Mar 2015)
item Litter of origin effects on gilt development in a commercial setting (Mar 2015)
item The influence of major histocompatibility complex and vaccination with turkey herpesvirus on Marek's disease virus evolution (Mar 2015)
item Gene expression profiling of MYC-driven tumor signatures in porcine liver stem cells by transcriptome sequencing (Feb 2015)
item Altered microRNA expression in bovine skeletal muscle with age (Feb 2015)
item Genomic data as the 'hitchhiker's guide' to cattle adaptation: time to track the milestones of past selection in the bovine genome (Feb 2015)
item A genome-wide association study for clinical mastitis in first parity US Holstein cows using a single-step approach and a genomic matrix re-weighting procedure (Feb 2015)
item Overview of new traits and phenotyping strategies in dairy cattle with a focus on functional traits (Feb 2015)
item Effects of melatonin or maternal nutrient restriction on vascularity and cell proliferation in the ovine placenta (Feb 2015)
item Dissection of genomic correlation matrices of US Holsteins using multivariate factor analysis (Feb 2015)
item Comparative genomics reveals tissue-specific regulation of prolactin receptor gene expression (Feb 2015)
item Evaluation of hair cortisol in beef cattle of divergent temperaments (Jan 2015)
item Assessment of autozygosity in Nellore cows (Bos indicus) through high-density SNP genotypes (Jan 2015)
item Genetic markers that influence feed efficiency phenotypes also affect cattle temperament as measured by flight speed (Jan 2015)
item Evolutionarily distinct bacteriophage endolysins featuring conserved peptidoglycan cleavage sites protect mice from MRSA infection (Jan 2015)
item Volatile organic compound flux from manure of cattle fed diets differing in grain processing method and co-product inclusion (Jan 2015)
item A study of vertebra number in pigs confirms the effect of vertnin and reveals additional QTL (Jan 2015)
item Research on gilt first estrus and pubertal development at USMARC (Jan 2015)
item Evaluation of reproductive characteristics of 21 highly inbred lines of White Leghorns divergently selected for or segregating in tumor resistance (Jan 2015)
item selectSNP – An R package for selecting SNPs optimal for genetic evaluation (Jan 2015)
item Comparison of CNVs in Buffalo with other species (Jan 2015)
item Vaccine induced differential expressions of miRNAs at cytolytic stage in chickens resistant or susceptible to Marek’s disease (Jan 2015)
item Effects of dietary glycerin inclusion at 0, 5, 10, and 15 percent of dry matter on energy metabolism and nutrient balance in finishing beef steers (Jan 2015)
item A polymorphism in myostatin influences puberty but not fertility in beef heifers, whereas µ-calpain affects first calf birth weight (Jan 2015)
item Prior genetic architecture impacting genomic regions under selection: An example using genomic selection in two poultry breeds (Jan 2015)
item Genetic improvement of dairy cattle (Jan 2015)
item Antibacterial and antibiofilm surfaces through Polydopamine-assisted immobilization of Lysostaphin as an antibacterial enzyme (Dec 2014)
item Heifer body weight gain and reproductive achievement in response to protein and energy supplementation while grazing dormant range forage (Dec 2014)
item ICAR guidelines for recording, evaluation and genetic improvement of female fertility in dairy cattle (Dec 2014)
item Lytic activity of the staphylolytic Twort phage endolysin CHAP domain is enhanced by the SH3b cell wall binding domain (Dec 2014)
item Characterizing the microbiome across the gastrointestinal tract from steers differing in feed efficiency (Dec 2014)
item Placental accommodations for transport and metabolism during intra-uterine crowding in pigs (Dec 2014)
item Comparison of single-trait to multi-trait national evaluations for yield, health, and fertility (Dec 2014)
item QTLs associated with dry matter intake, metabolic mid-test weight, growth and feed efficiency have little overlap across 4 beef cattle studies (Nov 2014)
item AN MHC class I immune evasion gene of Marek's disease virus (Nov 2014)
item Genomic signatures reveal geographic adaption and human selection in cattle (Nov 2014)
item Development of microsatellites from Cornus mas L. (Cornaceae) and characterization of genetic diversity of cornelian cherries from China, central Europe, and the United States (Nov 2014)
item The genetic architecture of climatic adaptation in tropical cattle (Nov 2014)
item Deletion on chromosome 5 associated with decreased reproductive efficiency in female cattle (Nov 2014)
item Association of circulating active and total ghrelin concentrations with dry matter intake, growth, and carcass characteristics of finishing beef cattle (Nov 2014)
item The consequence of level of nutrition on heifer ovarian and mammary development (Nov 2014)
item Temporal kinetics of Marek's disease herpesvirus: integration occurs early after infection in both B and T cells (Nov 2014)
item Lysozyme as an alternative to antibiotics improves performance in nursery pigs during an indirect immune challenge (Oct 2014)
item Characterization of the vaginal microbiota of ewes and cows reveals a unique microbiota with low levels of lactobacilli and near-neutral pH (Oct 2014)
item Genotype imputation efficiency in Nelore Cattle (Oct 2014)
item Genetic base changes for December 2014 (Oct 2014)
item Effect of high and low antral follicle count in pubertal beef heifers on in vitro fertilization (IVF) (Oct 2014)
item Net merit as a measure of lifetime profit: 2014 revision (Oct 2014)
item Altered theca and cumulus oocyte complex gene expression, follicular arrest and reduced fertility in cows with dominant follicle follicular fluid androgen excess (Oct 2014)
item Optimal dietary energy and protein for the development of gilts - NPB #12-209 (Sep 2014)
item Mayer-rokitansky-kuster-hauser (MRKH) syndrome: a historical perspective (Sep 2014)
item Identification of genomic regions associated with feed efficiency in Nelore cattle (Sep 2014)
item Relationship among eye temperature measured using digital infrared thermal imaging and vaginal and rectal temperatures in hair sheep and cattle (Sep 2014)
item Increased conception rates in beef cattle inseminated with nanopurified bull semen (Sep 2014)
item Co-expression analysis of fetal weight-related genes in ovine skeletal muscle during mid and late fetal development stages (Sep 2014)
item A genome-wide scan for selection signatures in Nelore cattle (Sep 2014)
item Effects of feeding dry-rolled corn-based diets with and without wet distillers grains with solubles and zilpaterol hydrochloride on performance characteristics, and heat stress in finishing beef steers (Sep 2014)
item Marek’s Disease Virus influences the core gut microbiome of the chicken during the early and late phases of viral replication (Aug 2014)
item Filling the knowledge gap: Integrating quantitative genetics and genomics in graduate education and outreach (Aug 2014)
item Increasing predictive ability using dominance in genomic selection (Aug 2014)
item Fast imputation using medium- or low-coverage sequence data (Aug 2014)
item Impact of adding foreign genomic information on Mexican Holstein imputation (Aug 2014)
item Allele-Specific Expression Screening Demonstrates that Variation in Genetic Resistance to Marek’s Disease in Chicken is Mainly Controlled at the Transcriptional Level (Aug 2014)
item Improving genomic prediction for Danish Jersey using a joint Danish-US reference population (Aug 2014)
item Using haplotypes to unravel the inheritance of Holstein coat color for a larger audience (Aug 2014)
item Increasing the number of single nucleotide polymorphisms used in genomic evaluations of dairy cattle (Aug 2014)
item Approximation of reliability of direct genomic breeding values (Aug 2014)
item Single nucleotide polymorphisms in candidate genes related to daughter pregnancy rate in Holstein cows (Aug 2014)
item The hunt for a functional mutation affecting conformation and calving traits on chromosome 18 in Holstein cattle (Aug 2014)
item Using the whole read: structural variant detection using NGS data (Aug 2014)
item Including cow information in genomic prediction of Holstein dairy cattle in the US (Aug 2014)
item Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins (Aug 2014)
item Single nucleotide polymorphism variants within tva and tvb receptor genes in Chinese chickens (Aug 2014)
item Neuropeptides linking the control of appetite with reproductive function in domestic animals (Aug 2014)
item Association of circulating concentrations of estradiol during the preovulatory period and expression of steroidogenic enzymes in beef cows (Aug 2014)
item Effects of change in body composition on gene expression in the uterine endometrium of beef cattle (Aug 2014)
item Identification of changes in bovine oviductal mRNA expression by RNAseq from animals with high and low circulating estradiol concentrations during timed artificial insemination (Aug 2014)
item In vitro development of preimplantation porcine embryos using alginate hydrogels as a three-dimensional extracellular matrix (Aug 2014)
item Endocrine and exocrine function of the bovine testis. Chapter 2 (Aug 2014)
item The development of genomics applied to dairy breeding (Aug 2014)
item Improvement of prediction ability for genomic selection of dairy cattle by including dominance effects (Aug 2014)
item Gentic improvement in cattle -- are we sacrificing reproduction in favor of production? (Aug 2014)
item Systematic Differences in the Response of Genetic Variation to Pedigree and Genome Based Selection Methods (Jul 2014)
item Characterization of 12 polymorphic microsatellite loci of Pityopsis graminifolia var. latifolia (Jul 2014)
item Multi-tissue omics analyses reveal molecular regulatory networks for puberty in composite beef cattle (Jul 2014)
item Differential expression profiling of miRNAs between Marek’s disease resistant and susceptible chickens (Jul 2014)
item An updated version of lifetime net merit incorporating additional fertility traits and new economic values (Jul 2014)
item Characterizing a point mutation within the UL5 gene that reduces in vivo replication and MD incidence (Jul 2014)
item Calculation and delivery of US genomic evaluations for dairy cattle (Jul 2014)
item Multi-trait, multi-breed conception rate evaluations (Jul 2014)
item Influence of Marek’s disease virus on the core-gut microbiome of chickens resistant or susceptible to Marek’s disease (Jul 2014)
item Determination of single nucleotide polymorphisms associated with subclinical ketosis in Jersey cattle (Jul 2014)
item Genomic selection for genetic resistance to Marek's disease (Jul 2014)
item LincRNAs in CD4+ T cells and Marek’s disease (Jul 2014)
item Systems biology approaches to understanding conceptus elongation and early pregnancy loss (Jul 2014)
item Arginine decarboxylase (ADC) and agmatinase (AGMAT): an alternative pathway for synthesis of polyamines in pig conceptuses and uteri (Jul 2014)
item Cell localization of SLC2 glucose transporter family member mRNA in endometria and placentae from pregnant pigs (Jul 2014)
item LH independent testosterone production is mediated by the interaction between GnRH-II and its receptor in the boar testis (Jul 2014)
item De novo assembly and identification of unique contigs in the bovine oviduct from animals with high and low circulating estradiol concentrations during timed artificial insemination (Jul 2014)
item Defining the lactocrine-sensitive neonatal porcine uterine transcriptome (Jul 2014)
item Granulosa cell gene expression profiling in cows with divergent follicular fluid concentrations of androgens (Jul 2014)
item Use of indoor boars as models for understanding seasonal infertility: Preliminary data (Jul 2014)
item Infection with Marek’s disease virus induces high levels of CD8a/a cells in chickens resistant to Marek’s disease (Jul 2014)
item The 1000 bull genome project (Jul 2014)
item DNA polymorphisms and transcript abundance of PRKAG2 and phosphorylated AMP-activated protein kinase in the rumen are associated with gain and feed intake in beef steers (Jul 2014)
item Mapping and genotypic analysis of NK-lysin gene in chicken (Jul 2014)
item Microarray studies in high and low RFI cattle reveal a potential role for gonadotropin releasing hormone (GnRH) in regulating feed efficiency (Jul 2014)
item Association of plasma ghrelin concentrations with feed intake in beef cattle (Jul 2014)
item Development of a lifetime merit-based selection index for US dairy grazing systems (Jul 2014)
item The cellular and molecular etiology of the craniofacial defects in the avian ciliopathic mutant talpid2 (Jul 2014)
item Effects of dietary glycerin inclusion at 0, 5, 10, and 15% of dry matter on energy metabolism and nutrient balance in finishing beef steers (Jul 2014)
item Effects of parity and selection for uterine capacity on sow litter performance traits (Jul 2014)
item Maternal dietary effects on embryonic ovarian development in cattle (Jul 2014)
item Effects of metabolizable energy intake on tympanic temperature and average daily gain of steers finished in southern Chile during wintertime (Jul 2014)
item Energy content of reduced-fat distillers grains for lactating dairy cows (Jul 2014)
item The SLICK Locus derived from Senepol cattle confers thermotolerance to Intensively-Managed lactating Holstein cows (Jul 2014)
item RNA-Seq detection of differential gene expression in the rumen of beef steers associated with feed efficiency phenotypes (Jul 2014)
item Influence of dry matter intake, dry matter digestibility, and feeding behavior on body weight gain of beef steers (Jul 2014)
item Comparison of efficiency of energy use in Holstein and Jersey dairy cows offered diets containing reduce fat distillers grains (RFDDGS) (Jul 2014)
item Can we improve cow efficiency or manipulate feeding strategies to reduce inputs? (Jul 2014)
item Non-targeted plasma metabolomic profile at early and late lactation in parity 1 dams with diverging body composition at weaning (Jul 2014)
item Evaluation of anthelmintic resistance of intestinal parasitic nematodes in heifers in south central Nebraska (Jul 2014)
item Influence of Miles City Line 1 on the United States Hereford Population (Jun 2014)
item Effects of maternal nutrient restriction followed by realimentation during midgestation on uterine blood flow in beef cows (Jun 2014)
item Index-in-retrospect and breeding objectives characterizing genetic improvement programs for South African Nguni cattle (Jun 2014)
item Salinity effects on Atlantic sturgeon growth and osmoregulation (Jun 2014)
item Relationship between selection for feed efficiency and methane production (Jun 2014)
item Intravitreal injection of a chimeric phage endolysin Ply187 protects mice from Staphylococcus aureus endophthalmitis (Jun 2014)
item Genomic evaluation, breed identification, and discovery of a haplotype affecting fertility for Ayrshire dairy cattle (Jun 2014)
item Effect of essential fatty acid and zinc supplementation during pregnancy on birth intervals, neonatal piglet brain myelination, stillbirth, and preweaning mortality (Jun 2014)
item Effects of RFRP2 and RF9 on secretion of luteinizing hormone in prepubertal gilts (Jun 2014)
item Measures of the ovaries and uterus during development of gilts selected for differences in uterine capacity (Jun 2014)
item Effects of IL8 and immune cells on the regulation of luteal progesterone secretion (Jun 2014)
item Relationship of follicle size and concentrations of estradiol among cows exhibiting or not exhibiting estrus during a fixed-time AI protocol (Jun 2014)
item Recent advances in studying of copy number variation and gene expression (May 2014)
item Linkage disequilibrium levels in Bos indicus and Bos taurus cattle using medium and high density SNP chip data and different minor allele frequency distributions (May 2014)
item Genotypes are useful for more than genomic evaluation (May 2014)
item Genotypes are useful for more than genomic evaluation (May 2014)
item Changes in the rumen microbiome from steers differing in feed efficiency (May 2014)
item Evaluation of the Criollo breed Romosinuano as purebred and crossbred cows with Brahman and Angus in Florida. I. Reproduction and parturition (May 2014)
item Genomic selection for producer-recorded health event data in US dairy cattle (May 2014)
item Comparison of methionine hydroxy analogue chelated versus sulfate forms of copper, zinc, and manganese on growth performance and pregnancy rates in yearling beef replacement heifers (May 2014)
item An investigation of the structure and function of antistaphylococcal endolysins using kinetic methods (May 2014)
item A genome-wide association study of calf birth weight in Holstein cattle using single nucleotide polymorphisms and phenotypes predicted from auxiliary traits (May 2014)
item Evaluation of the Criollo breed Romosinuano as purebred and crossbred cows with Brahman and Angus in Florida. II. Maternal influence on calf traits, cow weight, and measures of maternal efficiency (May 2014)
item Genomewide association study of reproductive efficiency in female cattle (May 2014)
item Short communication: Use of young bulls in the United States (May 2014)
item Genome-wide association study and ancestral origins of the slick-hair coat in tropically adapted cattle (Apr 2014)
item MicroRNA content in milk exosomes as a phenotypic indicator of Staphylococcus aureus infection in the bovine mammary gland (Apr 2014)
item Assessment of inbreeding depression in Nellore cows (Bos indicus) through high-density SNP genotypes (Apr 2014)
item Computational analysis of bovine milk exosomal miRNAs profiles derived from uninfected and Streptococcus uberis infected mammary gland (Apr 2014)
item Genome-Wide scans for carcass and meat traits in nellore cattle (Apr 2014)
item Evidence of common signatures of selection in the genomes of West African cattle and the Yoruba human population (Apr 2014)
item Genome-wide analysis reveals the ancient and recent admixture history of East African Shorthorn Zebu (EASZ) (Apr 2014)
item Population sequencing reveals breed and sub-species specific CNVs in cattle (Apr 2014)
item Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins (Apr 2014)
item A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle (Apr 2014)
item gga-miR-375 plays a key role in tumorigenesis post subgroup J Avian Leukosis Virus infection (Apr 2014)
item Genetic evaluation of stillbirth in US Brown Swiss and Jersey cattle (Apr 2014)
item Application of the a posteriori granddaughter design to the Holstein genome (Apr 2014)
item Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle (Mar 2014)
item Bovine exome sequence analysis and targeted SNP genotyping of recessive fertility defects HH2, HH3, and BH1 reveals causative mutation in SMC2 for HH3 (Mar 2014)
item Genome-wide association study for intramuscular fat deposition and composition in Nellore cattle (Mar 2014)
item Gene expression profiles of bovine mammary epithelial cells and association with milk composition traits using RNA-seq (Mar 2014)
item Identification and characterization of MicroRNAs expressed in chicken skeletal muscle (Mar 2014)
item Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle (Mar 2014)
item Global changes in uterine protein secretion are associated with differences in the number of antral follicles in heifers (Mar 2014)
item Energy dynamics during fetal to neonatal transition and the influence of perinatal energy stores on early neonatal survival (Mar 2014)
item Surface enlargement factor of rumen papillae and expression of genes involved in dermatological diseases and their relationships with feed intake in beef steers (Mar 2014)
item Lysozyme as an alternative to antibiotics improves growth performance and tumor necrosis factor-a levels during an indirect immune challenge (Mar 2014)
item Accuracy of genomic predictions in Bos indicus (Nellore) cattle (Feb 2014)
item Differential expression of Toll-like receptor pathway genes in chicken embryo fibroblasts from chickens resistant and susceptible to Marek’s disease (Feb 2014)
item Effects on specific promoter DNA methylation in zebrafish embryos and larvae following benzo[a]pyrene exposure (Feb 2014)
item Genome-wide mapping of loci explaining variance in scrotal circumference in Nellore cattle (Feb 2014)
item The challenges and importance of structural variation detection in livestock (Feb 2014)
item Genome-wide detection of signatures of selection in Korean Hanwoo cattle (Feb 2014)
item Host genetic resistance to Marek’s disease sustains protective efficacy of herpesvirus of turkey in both experimental and commercial lines of chickens (Feb 2014)
item Population sequencing reveals breed and sub-species specific CNVs in cattle (Feb 2014)
item House-level moisture production of modern swine by age, temperature and source (Feb 2014)
item Increasing long-term response by selecting for favorable minor alleles (Feb 2014)
item The effect of follicle age on conception rate in beef heifers (Feb 2014)
item Variation in the coding and 3’ untranslated regions of the porcine prolactin receptor short form modifies protein expression and function (Feb 2014)
item The effect of follicle age on pregnancy rate in beef cows (Jan 2014)
item Effects of decreased dietary roughage concentration on energy metabolism and nutrient balance in finishing beef cattle (Jan 2014)
item Characterization of microbiomes related to respiratory disease in cattle (Jan 2014)
item Preliminary analysis of microRNA transcriptome altered by vaccine and Marek’s disease virus in chickens (Jan 2014)
item The USDA Feed the Future Initiative for genetic improvement of African goats: an update on genomic resources and genetic characterization of indigenous breeds (Jan 2014)
item The use of population-scale sequencing to identify CNVs impacting productive traits in different cattle breeds (Jan 2014)
item Candidate causative mutation on BTA18 associated with calving and conformation traits in Holstein bulls (Jan 2014)
item An evaluation of the differences in the rumen transcriptome among beef steers with extreme feed efficiency phenotypes (Jan 2014)
item Uterine and placental interactions during necrotic tip development in the pig from day 22 to 42 of gestation (Jan 2014)
item Effect of high and low antral follicle count in pubertal beef heifers on IVF (Jan 2014)
item Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping (Dec 2013)
item Mating programs including genomic relationships and dominance effects (Dec 2013)
item ATF3 Expression in the corpus luteum: possible role in luteal regression (Dec 2013)
item Complete genome sequence of channel catfish gastrointestinal sepicemia isolate Edwardsiella tarda C07-087 (Nov 2013)
item Adipose and muscle tissue gene expression of two genes (NCAPG and LCORL) located in a chromosomal region associated with cattle feed intake and gain (Nov 2013)
item Effect of artificial selection on runs of Homozygosity in U.S. Holstein cattle (Nov 2013)
item The effect of soluble uterine factors on porcine embryo development within a three-dimensional alginate matrix system (Nov 2013)
item Genetic susceptibility to infectious disease in East African Shorthorn Zebu: a genome-wide analysis of the effect of heterozygosity and exotic introgression (Nov 2013)
item Effect of age at puberty/conception date on cow longevity (Nov 2013)
item A genome scan for meat quality in Nelore beef cattle (Nov 2013)
item Transcriptional profiling of Meq-dependent genes in Marek’s disease resistant and susceptible inbred chicken lines (Oct 2013)
item Accuracy of genomic predictions in Nellore beef cattle (Oct 2013)
item A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle (Oct 2013)
item Structural and functional impacts of copy number variations on the cattle genome (Oct 2013)
item The Genetic Architecture of Genetic Resistance to Marek's Disease (Sep 2013)
item Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds (Sep 2013)
item Increasing long term response by selecting for favorable minor alleles (Sep 2013)
item Measuring genomic pre-selection in theory and in practice (Sep 2013)
item Physicochemical characterization of Staphylococcus aureus-lysing LysK enzyme in complexes with polycationic (Sep 2013)
item Circulating bovine pregnancy associated glycoproteins (bPAGs) are associated with late embryonic/fetal survival but not ovulatory follicle size in suckled beef cows (Sep 2013)
item Alternative models in genetic analyses of carcass traits measured by ultrasonography in Guzerá cattle: A Bayesian approach (Sep 2013)
item Metabolic status, gonadotropin secretion, and ovarian function during acute nutrient restriction of beef heifers (Sep 2013)
item Heifer calving date positively influences calf weaning weights through six parturitions (Sep 2013)
item Effects of glycerin on receiving performance and health status of beef steers and nutrient digestibility and rumen fermentation characteristics of growing steers (Aug 2013)
item High overlap of CNVs and selection signatures revealed by varLD analyses of taurine and zebu cattle (Aug 2013)
item Random forests approach for identifying additive and epistatic single nucleotide polymorphisms associated with residual feed intake in dairy cattle (Aug 2013)
item Effects of fertility on gene expression and function of the bovine endometrium (Aug 2013)
item Effects of nesfatin-1 on food intake and LH secretion in prepubertal gilts and genomic association of the porcine NUCB2 gene with growth traits (Aug 2013)
item Effects of crude glycerin in steam-flaked corn-based diets fed to growing feedlot cattle (Aug 2013)
item Application of a posteriori granddaughter and modified granddaughter designs to determine Holstein haplotype effects (Aug 2013)
item Single nucleotide polymorphisms in candidate genes associated with fertilizing ability of sperm and subsequent embryonic development in cattle (Jul 2013)
item Goat breeding in the tropics: development and application of the genomic tools in a USAID "Feed the Future" program (Jul 2013)
item Genome-wide association mapping for identification of quantitative trait loci for rectal temperature during heat stress in Holstein cattle (Jul 2013)
item Ruminal and adipose gene expression in beef steers selected for diverse feed intake and gain phenotypes (Jul 2013)
item Ruminal methanogens in steers that are negative or positive for residual gain (Jul 2013)
item Relationships of birth weight traits with age at first estrus and number of ovulations in Landrace-Duroc-Yorkshire gilts (Jul 2013)
item Heritability estimates of performance and health traits of Holstein calves (Jul 2013)
item Breeding for polled dairy cows versus dehorning: Preliminary cost assessments & discussion (Jul 2013)
item Using 90,113 single nucleotide polymorphisms in genomic evaluation of dairy cattle (Jul 2013)
item Genomic divergence of indicine and taurine cattle identified through high-density SNP genotyping (Jul 2013)
item Abundance of total genomic 5-methylcytosine and 5-hydroxymethylcytosine in different pig tissues (Jul 2013)
item Application of a posteriori granddaughter and modified granddaughter designs to determine Holstein haplotype effects (Jul 2013)
item Analysis of health trait data from on-farm computer systems in the U.S. I: Pedigree and genomic variance components estimation (Jul 2013)
item Regression metamodels of an optimal genomic testing strategy in dairy cattle when selection intensity is low (Jul 2013)
item Analysis of health trait data from on-farm computer systems in the U.S. II: Comparison of genomic analyses including two-stage and single-step methods (Jul 2013)
item Optimal age at first calving for U.S. dairy cattle (Jul 2013)
item Lipogenic-associated gene activity of adipose tissue from beef heifers and relation to production and reproductive traits (Jul 2013)
item Mating programs including genomic relationships (Jul 2013)
item Trends in noncompliance with milk quality standards for Dairy Herd Improvement herds in the United States (Jul 2013)
item Genomic evaluation and identification of haplotype affecting fertility for Ayrshire dairy cattle (Jul 2013)
item Tools to exploit sequence data to find new markers and disease loci in dairy cattle (Jul 2013)
item Relationship of follicle size and concentrations of estradiol among cows that do and do not exhibit estrus during a fixed-time AI protocol (Jul 2013)
item The effects of selecting for the myostatin F94L polymorphism on reproductive traits in pubertal heifers (Jul 2013)
item Dissection of genomic correlation matrices using multivariate factor analysis in dairy and dual-purpose cattle breeds (Jul 2013)
item Use of the Immunocrit to monitor a split-suckle program in commercial production (Jul 2013)
item Triennial Reproduction Symposium: Limitations in uterine and conceptus physiology that lead to fetal losses (Jul 2013)
item Laser capture microdissection coupled with RNA-seq reveals that short cuboidal trophoblast cells of the porcine placenta possess a transcriptome consistent with a migratory cell type (Jul 2013)
item A bovine model for polycystic ovary syndrome (Jul 2013)
item Changes in ovarian function associated with circulating concentrations of estradiol prior to a GnRH-induced ovulation in beef cows (Jul 2013)
item We are making inroads on health and fitness traits (Jul 2013)
item Possible roles of transporters SLC2A5 and SLC2A8 in fructose movement between maternal and fetal tissues during pig pregnancy (Jul 2013)
item Granulosa cells from bovine follicles activate different signal transduction pathways dependent on follicle health status and ability to convert androstenedione to estrogen (Jul 2013)
item Effects of roughage concentration in dry-rolled corn-based diets containing wet distillers grains with solubles on performance and carcass characteristics of finishing beef steers (Jul 2013)
item Does reduced peri-pubertal nutrient intake influence the ovarian reserve in beef heifers? (Jul 2013)
item Insulin and insulin-like growth factor-I (IGF-I) receptor phosphorylation in µ-calpain knockout mice (Jul 2013)
item Role of GnRH-II and its receptor in testicular function (Jul 2013)
item Genetics of reproductive traits: Antagonisms with production traits (Jun 2013)
item An atlas of DNA methylation in diverse bovine tissues (Jun 2013)
item Effect of pubertal status and number of estrous cycles prior to the breeding season on pregnancy rate in beef heifers (Jun 2013)
item Fall pasture quality for cows in mid-pregnancy has minimal effects on offspring growth (Jun 2013)
item Impact of number of estrous cycles exhibited prior to start of breeding on reproductive performance in beef heifers (Jun 2013)
item Genome-wide association study for birth weight Brazilian Nellore cattle (Bos primigenuis indicus) points to previously described orthologous genes affecting human and bovine height (Jun 2013)
item Roles of selected nutrients in development of the porcine conceptus during pregnancy (Jun 2013)
item Application of RNA-seq transcriptomic analysis to reproductive physiology of the pig: Insights into differential trophoblast function within the late gestation porcine placenta (Jun 2013)
item Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle (Jun 2013)
item Integrated analyses of genome-wide DNA occupancy and expression profiling identify key genes and pathways involved in cellular transformation by the Marek's disease virus oncoprotein Meq (Jun 2013)
item Comparative analysis of CNV calling algorithms: literature survey and a case study using bovine high-density SNP data (Jun 2013)
item Association of STAT2 SNP genotypes and growth phenotypes in heifers from an Angus, Brahman and Romosinuano diallel population (Jun 2013)
item Standardization of health data – ICAR guidelines including health key (May 2013)
item Genomic evaluation of health traits in dairy cattle (May 2013)
item Challenges and opportunities for farmer-recorded data in health and welfare selection (May 2013)
item Undetectable bacterial resistance to phage lytic proteins from the Staphylococcus aureus bacteriophage vB_SauS-phiIPLA88 (May 2013)
item Visualization of Marek’s disease virus in vitro using enhanced green fluorescent protein fused with US10 (May 2013)
item Feedlot research at the U.S. Meat Animal Research Center (Apr 2013)
item Open source tools to exploit DNA sequence data from livestock species (Apr 2013)
item Mating programs including genomic relationships and dominance effects (Apr 2013)
item Analysis of population structure and genetic history of cattle breeds based on high-density SNP data (Apr 2013)
item Changes in expression of CWC15 during preimplantation development in the bovine embryo (Apr 2013)
item DNMT gene expression and methylome in Marek’s disease resistant and susceptible chickens prior to and following infection by MDV (Apr 2013)
item Genetic variation in bison (bison bison) subspecies and cattle (Bos taurus) breeds and subspecies (Mar 2013)
item Fetal liver glycogen production and glycogenic transcript expression during prenatal development from pig breeds differing in preweaning survivability (Mar 2013)
item Environmental impact of new feeding choices in the feedlot industry (Mar 2013)
item Estrogen receptor 1 and 2 mRNA expression and protein localization in the porcine endometrium during the estrous cycle and early pregnancy (Mar 2013)
item How our basic understanding of the ovarian reserve is improving reproductive management in domestic farm animals (Mar 2013)
item Methylation patterns in fetal tissues generated from gilts inseminated with fresh or cryopreserved semen (Mar 2013)
item Bovine females with thecal cell androgen excess result in altered oocyte maternal effect gene abundance (Mar 2013)
item Physiology and Endocrinology Symposium: The current status of heat shock in early embryonic survival and reproductive efficiency (Mar 2013)
item Deep sequencing of immune repertoires during bovine development and in response to respiratory pathogen challenge (Feb 2013)
item Does resistance to Marek’s disease select for specific gut microflora that play a role in influencing the host immune response (Feb 2013)
item Bacteriophage-encoded lytic enzymes control growth of contaminating Lactobacillus found in fuel ethanol fermentations (Feb 2013)
item DNA methylation down-regulates EGFR expression in chicken (Feb 2013)
item Systems Biology in Animal Breeding: Identifying relationships among markers, genes, and phenotypes (Feb 2013)
item Bos taurus indicus (Nelore) hybrid assembly improvement using PacBio reads (Jan 2013)
item Marek's Disease Virus Infection Induces Widespread Differential Chromatin Marks in Inbred Chicken Lines (Jan 2013)
item Genome-wide copy number variant analysis in inbred chickens lines with different susceptibility to Marek's disease (Jan 2013)
item Identification of specific long noncoding RNA profiles in chicken with different susceptibility to Marek's disease (Jan 2013)
item Identification of direct gene targets that the MDV oncoprotein Meq regulates via ChIP and expression analyses (Jan 2013)
item Host Genetics and Vaccine Efficacy: Global gene expression differentiation induced by vaccine and MDV in MD resistant and susceptible chickens based on Next-Gen RNA-Seq reads (Jan 2013)
item Population analysis of 60 worldwide cattle breeds using high-density (700k)SNP genotyping (Jan 2013)
item Microsatellite Imputation for parental verification from SNP across multiple Bos taurus and indicus breeds (Jan 2013)
item Complete genome assemblies and methylome characterization in infectious diseases (Jan 2013)
item African goat improvement project: A feed the future initiative harnessing geneticdiversity for conservation, disease resistance, and improved productivity (Jan 2013)
item Multi-platform next generation sequencing of a high quality genome assembly for the goat (Jan 2013)
item Admixture and linkage disequilibrium analysis of meat goat breeds (Jan 2013)
item Mapping cattle copy number variations in water buffalo (Jan 2013)
item Combined arms: a full spectrum approach to structural variant discovery in livestock populations (Jan 2013)
item What we know about the genetics of reproduction (Dec 2012)
item Effect of heifer calving date on longevity and lifetime productivity (Dec 2012)
item Management strategies for improving lifetime reproductive success in beef heifers (Dec 2012)
item Comparison of methionine chelated versus sulfate trace minerals on rate and efficiency of gain and pregnancy rates in beef heifers (Jul 2012)
Last Modified: 9/20/2013
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