The UPIC zip file contains 2 perl scripts, a README, and sample input and the resulting outputs. We would appreciate citation if you use them. As of 1 November, 2010, the zip file also contains an beta optimized script (upic_optimum_v1.1.20101101.pl) that produces a comma separated file, with all the markers that discriminate at least one line, which shows which lines have unique patterns. This allows you to select markers by score & line.
Please contact us if you have problems or questions.
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