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ARS Home » Midwest Area » Columbia, Missouri » Plant Genetics Research » Research » Publications at this Location » Publication #109478
Title: MICROSATELLITES IN MAIZE - DEVELOPMENT AND MAPPING

Author
item SHAROPOVA, N - UNIV OF MISSOURI-COLUMBIA
item McMullen, Michael
item SCHULTZ, L - UNIV OF MISSOURI-COLUMBIA
item SCHROEDER, S - UNIV OF MISSOURI-COLUMBIA
item Guill, Katherine
item CHIN, E - GARST SEEDS, SLATER, IOWA
item EDWARDS, K - UNIV BRISTOL, BRISTOL, UK
item BERGSTROM, D - UNIV OF MISSOURI-COLUMBIA
item LISCUM, E - UNIV OF MISSOURI-COLUMBIA
item CONE, K - UNIV OF MISSOURI-COLUMBIA

Submitted to: Plant and Animal Genome VX Conference Abstracts
Publication Type: Abstract Only
Publication Acceptance Date: 1/9/2000
Publication Date: 1/9/2000
Citation: SHAROPOVA, N., MCMULLEN, M.D., SCHULTZ, L.M., SCHROEDER, S.G., HOUCHINS, K.E., CHIN, E., EDWARDS, K., BERGSTROM, D.E., LISCUM, E., CONE, K.C. MICROSATELLITES IN MAIZE - DEVELOPMENT AND MAPPING. PLANT AND ANIMAL GENOME ABSTRACTS. 2000. ABSTRACT P. 174.

Interpretive Summary:

Technical Abstract: Simple sequence repeats (SSRs, microsatellites) are a class of tandem repeats that involve a base motif of 1-6 base pairs. In plants, SSRs are abundant, highly informative, and easy to use markers. Genome mapping using these sequence-derived markers will facilitate integration of physical and genetic maps in maize. One of Missouri Maize Project goals is to develop and map SSR markers and to release this information through MaizeDB. We ar developing SSR markers from both microsatellite-enriched genome libraries and systematic searching of publicly available DNA sequences. Three mapping populations are being employed to map as many SSR polymorphisms as possible IBM, F7:8 recombinant inbred population of Mo17 X B73 intermated through 4 generations, 360 individuals; TxCO IF2, immortalized F2 population of Tx303 X CO159, 54 individuals; and CEW6, immortalized F2 population of T218 X GT119, 93 individuals. Common SSR markers are mapped in all three populations to integrate information. Mapping on the IBM population will provide enhanced resolution for tightly linked loci, while employment of IF2 and CEW6 will allow consolidation of newly developed maps with current information. Comparisons of SSR maps derived from these three populations and the maize SSR consensus map will be presented.