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ARS Home » Plains Area » Kerrville, Texas » Knipling-Bushland U.S. Livestock Insects Research Laboratory » Veterinary Pest Genetics Research Unit » Research » Publications at this Location » Publication #434785
Research Project: Exploiting Veterinary Pest Genomics to Improve Animal Health

Location: Veterinary Pest Genetics Research Unit

Title: Whole genome sequencing and assembly of Lipoptena mazamae in the National Center for Biotechnology Information

Author
item Luecke, David
item Bodine, Deanna
item Bendele, Kylie
item Olafson, Pia
item BENOIT, JOSHUA - University Of Cincinnati
item Saelao, Perot

Submitted to: National Center for Biotechnology Information (NCBI)
Publication Type: Database / Dataset
Publication Acceptance Date: 4/30/2026
Publication Date: N/A
Citation: N/A

Interpretive Summary: Generation of a genome assembly from a single individual adult using long-read sequencing and Hi-C scaffolding. The goal of this project was to generate a high-quality reference genome for Lipoptena mazamae to enable comparison with related Hippoboscidae, including the European deer ked (Lipoptena cervi). BioProject Accession Number PRJNA1438677 BioSample Accession Number DeerKed_Pupa SAMN56545328 BioSample Accession Number DeerKed_Female SAMN56545329 Genomic SRA Study Accession SRP684593 Genomic SRA Accession Adult_Female_HiFi SRR37668644 Genomic SRA Accession Pupa_Hi-C SRR37668643 WGS Accession Number JBXVQB000000000 This Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession JBXVQB000000000. The version described in this paper is version JBXVQB010000000. DOI/URL https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1438677/

Technical Abstract: Generation of a genome assembly from a single individual adult using long-read sequencing and Hi-C scaffolding. The goal of this project was to generate a high-quality reference genome for Lipoptena mazamae to enable comparison with related Hippoboscidae, including the European deer ked (Lipoptena cervi). BioProject Accession Number PRJNA1438677 BioSample Accession Number DeerKed_Pupa SAMN56545328 BioSample Accession Number DeerKed_Female SAMN56545329 Genomic SRA Study Accession SRP684593 Genomic SRA Accession Adult_Female_HiFi SRR37668644 Genomic SRA Accession Pupa_Hi-C SRR37668643 WGS Accession Number JBXVQB000000000 This Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession JBXVQB000000000. The version described in this paper is version JBXVQB010000000. DOI/URL https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1438677/