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ARS Home » Plains Area » Kerrville, Texas » Knipling-Bushland U.S. Livestock Insects Research Laboratory » Veterinary Pest Genetics Research Unit » Research » Publications at this Location » Publication #426249
Research Project: Genetics of Veterinary Pests

Location: Veterinary Pest Genetics Research Unit

Title: Whole genome assembly of the horn fly, Haematobia irritans, in the National Center for Biotechnology Information

Author
item Luecke, David
item Bendele, Kylie
item Bodine, Deanna
item Lohmeyer, Kimberly
item Olafson, Pia
item Saelao, Perot

Submitted to: National Center for Biotechnology Information (NCBI)
Publication Type: Database / Dataset
Publication Acceptance Date: 4/22/2025
Publication Date: 4/29/2025
Citation: Luecke, D.M., Bendele, K.G., Bodine, D.M., Lohmeyer, K.H., Olafson, P.U., Saelao, P. 2025. Whole genome assembly of the horn fly, Haematobia irritans in the National Center for Biotechnology Information. National Center for Biotechnology Information (NCBI). PRJNA1239389.

Interpretive Summary: Develop a de novo chromosome level genome assembly for the horn fly. The goal of the study was to reduce fragmentation of the previous genome and develop a fully scaffolded assembly. BioProject PRJNA1239389 BioSamples HiC_Embryo_Early SAMN47512679 HiC_Embryo_Mid SAMN47512680 HiC_Embryo_Late SAMN47512681 Adult_Male SAMN47512682 Adult_Female SAMN47512683 Sequence Read Archive (SRA) Study SRP572968 HiC_Embryo_Early SRR32849920 HiC_Embryo_Mid SRR32849919 HiC_Embryo_Late SRR32849918 Adult_Male_HiFi_Revio_ULI SRR32849917 Adult_Male_HiFi_Revio_Standard SRR32849916 Adult_Male_HiFiSequel_IIe_ULI SRR32849915 Adult_Female_HiFi SRR32849914 Genome JBNFPT000000000 This Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession JBNFPT000000000. The version described in this paper is version JBNFPT010000000. DOI/URL: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1239389

Technical Abstract: Develop a de novo chromosome level genome assembly for the horn fly. The goal of the study was to reduce fragmentation of the previous genome and develop a fully scaffolded assembly. BioProject PRJNA1239389 BioSamples HiC_Embryo_Early SAMN47512679 HiC_Embryo_Mid SAMN47512680 HiC_Embryo_Late SAMN47512681 Adult_Male SAMN47512682 Adult_Female SAMN47512683 Sequence Read Archive (SRA) Study SRP572968 HiC_Embryo_Early SRR32849920 HiC_Embryo_Mid SRR32849919 HiC_Embryo_Late SRR32849918 Adult_Male_HiFi_Revio_ULI SRR32849917 Adult_Male_HiFi_Revio_Standard SRR32849916 Adult_Male_HiFiSequel_IIe_ULI SRR32849915 Adult_Female_HiFi SRR32849914 Genome JBNFPT000000000 This Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession JBNFPT000000000. The version described in this paper is version JBNFPT010000000. DOI/URL: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1239389