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ARS Home » Northeast Area » Ithaca, New York » Robert W. Holley Center for Agriculture & Health » Plant, Soil and Nutrition Research » Research » Publications at this Location » Publication #368021

Research Project: Improving Crop Efficiency Using Genomic Diversity and Computational Modeling

Location: Plant, Soil and Nutrition Research

Title: Comparative evolutionary genetics of deleterious load in sorghum and maize

Author
item LOZANO, ROBERTO - CORNELL UNIVERSITY - NEW YORK
item GAZAVE, ELODIE - CORNELL UNIVERSITY - NEW YORK
item DOS SANTOS, JHONATHAN P.R. - UNIVERSIDAD DE SAO PAULO
item VALLURU, RAVI - CORNELL UNIVERSITY - NEW YORK
item BANDILLO, NONOY - CORNELL UNIVERSITY - NEW YORK
item FERNANDES, SAMUEL - UNIVERSITY OF ILLINOIS
item BROWN, PATRICK - UNIVERSITY OF CALIFORNIA, DAVIS
item SHAKOOR, NADIA - DANFORTH PLANT SCIENCE CENTER
item MOCKLER, TODD - DANFORTH PLANT SCIENCE CENTER
item ROSS-IBARRA, JEFFREY - UNIVERSITY OF CALIFORNIA, DAVIS
item Buckler, Edward - Ed
item GORE, MICHAEL - CORNELL UNIVERSITY - NEW YORK

Submitted to: Nature Plants
Publication Type: Peer Reviewed Journal
Publication Acceptance Date: 12/9/2020
Publication Date: 1/15/2021
Citation: Lozano, R., Gazave, E., Dos Santos, J., Valluru, R., Bandillo, N., Fernandes, S., Brown, P.J., Shakoor, N., Mockler, T., Ross-Ibarra, J., Buckler IV, E.S., Gore, M.A. 2021. Comparative evolutionary genetics of deleterious load in sorghum and maize. Nature Plants. (7):17-24. https://doi.org/10.1038/s41477-020-00834-5.
DOI: https://doi.org/10.1038/s41477-020-00834-5

Interpretive Summary: Sorghum and maize share a similar evolutionary development and comparing their genomic variation reveals the genetic commonalities and differences between each species. This study specifically compared the deleterious mutations (mutations in the gene sequence that threaten the health of the species) in both corn and maize. One conclusion of this study is that unlike maize, sorghum has not experienced higher deleterious mutations as a result of domesticating formerly wild varieties. This study was also able to estimate with some accuracy the impact of genetic mutations in both species genes. This information will be useful for future breeding efforts in sorghum and maize.

Technical Abstract: Sorghum and maize share a close evolutionary history that can be explored through comparative genomics. To perform a large-scale comparison of the genomic variation between these two species, we analyzed 13M variants called from the whole genome resequencing (WGS) of 468 sorghum lines together with 25M variants previously identified in 1,218 maize lines. Deleterious mutations in both species were prevalent in pericentromeric regions, enriched in non-syntenic genes, and present at low allele frequencies. A comparison of deleterious burden between sorghum and maize revealed that sorghum, in contrast to maize, departed from the “domestication cost” hypothesis, which predicts a higher deleterious burden among improved compared to wild lines. Additionally, sorghum and maize population genetic summary statistics were used to predict a gene deleterious index with accuracies higher than 0.5. Our data refines previous estimates of deleterious mutations in sorghum, opening a venue to further characterize their impact on sorghum’s biology and breeding efforts.