Skip to main content
ARS Home » Pacific West Area » Pullman, Washington » WHGQ » Research » Publications at this Location » Publication #353883

Research Project: Biology, Ecology, and Genomics of Pathogenic and Beneficial Microorganisms of Wheat, Barley, and Biofuel Brassicas

Location: Wheat Health, Genetics, and Quality Research

Title: Location-dependent impacts of liming and crop rotation on bacterial communities in acid soils of the Pacific Northwest

item SCHROEDER, KURTIS - University Of Idaho
item Schlatter, Daniel
item Paulitz, Timothy

Submitted to: Applied Soil Ecology
Publication Type: Peer Reviewed Journal
Publication Acceptance Date: 5/22/2018
Publication Date: 9/5/2018
Citation: Schroeder, K.L., Schlatter, D.C., Paulitz, T.C. 2018. Location-dependent impacts of liming and crop rotation on bacterial communities in acid soils of the Pacific Northwest. Applied Soil Ecology. 130:59-68.

Interpretive Summary: Acid soils (low pH) have become an increasing problem in the rainfed cereal-based cropping systems of northern Idaho and eastern Washington. This has resulted from the long use of ammonium-based nitrogen fertilizers, and has reduced productivity and caused aluminum toxicity. This study looks at liquid lime treatments to raise the pH and crop productivity. We asked the question- how are the bacterial communities changed by the liming treatments in field plots at 3 locations over two years? We used a DNA sequencing technique to at total bacterial communities. Bacteria play a major role in nutrient cycling, especially nitrogen. Even with a minimal increase in pH, bacterial communities were shifted.

Technical Abstract: The cropping systems of northern Idaho and eastern Washington are dominated by a cereal-based (winter wheat) rotation that is exclusively rainfed. Following the green revolution, the productivity of wheat increased dramatically with semi-dwarf varieties and inexpensive synthetic fertilizers. However, long-term and frequent use of ammonium-based nitrogen fertilizers has resulted in the gradual acidification of fields in the region, with reduced productivity and symptoms of aluminum toxicity in some locations. A micronized liquid formulation of lime (calcium carbonate) was evaluated at three locations to mitigate soil acidification. To examine how liming affects bacterial community structure, soil samples were taken in the spring in wheat and pea rotations after lime application in the fall, DNA was extracted and 16S rRNA gene were amplified and sequenced with Illumina MiSeq. pH was only increased ~0.2-0.3 units in most locations, and liming only had a significant effect on bacterial community composition at one location (Pullman). Liming had no consistent or significant effect on community richness or diversity. Location had a stronger effect on communities than liming or crop rotation, but some specific taxa increased in relative abundance in response to liming, including the families Cytophagaceae and Flavobacteriaceae (Phylum Bacteroidetes), A4b (Phylum Chloroflexi), and Opitutaceae (Phylum Verrucomicrobia). A number of OTUs in Chitinophagaceae and Xanthomonadaceae were increased by liming at the Pullman location, which had 3-4 X more OTUs affected by liming than the other locations. Streptomycetaceae and Oxalobacteraceae were more abundant on wheat than pea. In conclusion, there was a strong interaction between liming and location in determining soil bacterial composition, but specific components of the bacterial community responded to even minimal increases in soil pH.