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ARS Home » Pacific West Area » Wenatchee, Washington » Physiology and Pathology of Tree Fruits Research » Research » Publications at this Location » Publication #339240

Research Project: Integration of Host-Genotype and Manipulation of Soil Biology for Soil-borne Disease Control in Agro-Ecosystems

Location: Physiology and Pathology of Tree Fruits Research

Title: Exploring the rhizosphere via metabolic profiling

Author
item Leisso, Rachel
item Mazzola, Mark

Submitted to: HortScience
Publication Type: Abstract Only
Publication Acceptance Date: 4/11/2017
Publication Date: 9/1/2017
Citation: Leisso, R.S., Mazzola, M. 2017. Exploring the rhizosphere via metabolic profiling. HortScience. 52:S109.

Interpretive Summary:

Technical Abstract: Microbial dynamics and plant-microbe interactions in the rhizosphere have long been topics of interest in horticulture, due to their influence on plant disease and role in nutrient acquisition. Information regarding plant rhizodeposits that impact rhizobiome and chemistry is limited to date and typically focuses on a few particular pathways. Metabolic profiling is a technique which enables both the characterization of metabolites produced by plant roots as well as indirect assessment of microbial activity. This technique evaluates levels of small molecules from multiple pathways simultaneously using methods such as gas-chromatograph-mass spectrometry, liquid-chromatography-mass spectrometry, or nuclear magnetic resonance spectroscopy. Metabolic profiling has almost limitless potential with regard to improved understanding of horticulturally regulated aspects of the rhizosphere, including precision phenotyping of soil environments, rhizosphere microbial engineering, new chemistries for disease control, and plant breeding efforts. For this workshop, both conceptual as well as methodology considerations for the application of metabolic profiling to the rhizosphere will be discussed. To provide a knowledge basis and a conceptual framework, forms of rhizodeposition and functional attributes of rhizodeposits, as well as metabolic profiling of rhizodeposits, will be discussed. Second, the merits and challenges of both “targeted” vs “untargeted” metabolic profiling, and the metabolic profiling of axenic plant rhizodeposition vs the “holobiont”, along with the implications for interpretation in each with be examined. Options for performing metabolic profiling research where equipment availability is limited will be considered.