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Title: Total of 46 sampled plants from wild tomato species genome sequencing. Study SRP034922, BioProject PRJNA230524 and BioSamples SAMN02436034 - SAMN02436079.

Author
item Labate, Joanne
item Robertson, Larry
item STRICKLER, SUSAN - Boyce Thompson Institute
item MUELLER, LUCAS - Boyce Thompson Institute

Submitted to: National Center for Biotechnology Information (NCBI)
Publication Type: Other
Publication Acceptance Date: 1/6/2014
Publication Date: 12/3/2014
Citation: Labate, J.A., Robertson, L.D., Strickler, S., Mueller, L. 2014. Total of 46 sampled plants from wild tomato species genome sequencing. Study SRP034922,BioProject PRJNA230524 and BioSamples SAMN02436034 - SAMN02436079. National Center for Biotechnology Information (NCBI). 1.

Interpretive Summary:

Technical Abstract: This BioProject consists of raw genotyping-by-sequencing data collected in 96-plex format on an Illumina HiSeq 2000 sequencing system. There were four to six experimental replicates for each of the 46 plants. The development of tens of thousands of mapped SNP markers in wild tomato species was highly successful. Relative levels of heterozygosity of sampled plants were consistent with what would be expected for mating systems of the different species. Proportions of heterozygous SNP sites ranged from 0.2% in the highly autogamous S. neorickii to 11.2% in the typically self-incompatible, allogamous S. peruvianum. These markers are now available for other applications such as mapping morphological differences between species, marker assisted breeding, germplasm characterization, taxonomy, and DNA fingerprinting.