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ARS Home » Pacific West Area » Albany, California » Plant Gene Expression Center » Research » Research Project #434465
Research Project: Mining Collections of Wild Germplasm and Novel Defense Regulators for Enhanced Plant Defenses

Location: Plant Gene Expression Center

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Utilising natural diversity of kinases to rationally engineer interactions with the angiosperm immune receptor ZAR1 Reprint Icon - (Peer Reviewed Journal)
Diplock, N., Baudin, M., Harden, L.A., Silva, C.J., Erickson-Beltran, M.L., Hassan, J.A., Lewis, J.D. 2023. Utilising natural diversity of kinases to rationally engineer interactions with the angiosperm immune receptor ZAR1. Plant, Cell & Environment. 46(7):2238-2254. https://doi.org/10.1111/pce.14603.

Genome-wide identification of fitness determinants in the Xanthomonas campestris bacterial pathogen during early stages of plant infection Reprint Icon - (Peer Reviewed Journal)
Luneau, J.S., Baudin, M., Monnens, T., Carrere, S., Bouchez, O., Jardinaud, M., Gris, C., Francois, J., Ray, J., Torralba, B., Arlat, M., Lewis, J.D., Lauber, E., Deutschbauer, A.M., Noel, L.D., Boulanger, A. 2022. Genome-wide identification of fitness determinants in the Xanthomonas campestris bacterial pathogen during early stages of plant infection. New Phytologist. https://doi.org/10.1111/nph.18313.

The phloem as an arena for plant pathogens Reprint Icon - (Peer Reviewed Journal)
Lewis, J.D., Knoblauch, M., Turgeon, R. 2022. The phloem as an arena for plant pathogens. Annual Review of Phytopathology. 60:77–96. https://doi.org/10.1146/annurev-phyto-020620-100946.

What the wild things do: Mechanisms of plant host manipulation by bacterial type III-secreted effector proteins Reprint Icon - (Peer Reviewed Journal)
Schreiber, K.J., Chau-Ly, I., Lewis, J.D. 2021. What the wild things do: Mechanisms of plant host manipulation by bacterial type III-secreted effector proteins. Microorganisms. 9(5). Article 1029. https://doi.org/10.3390/microorganisms9051029.

Gene duplication at the Fascicled ear1 locus controls fate of inflorescence meristem cells in maize Reprint Icon - (Peer Reviewed Journal)
Hake, S.C., Du, Y., Lunde, C., Li, Y., Jackson, D., Zhang, Z. 2021. Gene duplication at the Fascicled ear1 locus controls fate of inflorescence meristem cells in maize. Proceedings of the National Academy of Sciences(PNAS). 118(7). Article e2019218118. https://doi.org/10.1073/pnas.2019218118.

Identification of a putative DNA-binding protein in Arabidopsis that acts as a susceptibility hub and interacts with multiple Pseudomonas syringae effectors Reprint Icon - (Peer Reviewed Journal)
Schreiber, K.J., Lewis, J.D. 2020. Identification of a putative DNA-binding protein in Arabidopsis that acts as a susceptibility hub and interacts with multiple Pseudomonas syringae effectors. Molecular Plant-Microbe Interactions. 34(4). https://doi.org/10.1094/MPMI-10-20-0291-R.

Arabidopsis Abscisic Acid Repressor 1 (ABR1) is a susceptibility hub that interacts with multiple Pseudomonas syringae effectors Reprint Icon - (Peer Reviewed Journal)
Schreiber, K.J., Hassan, J.A., Lewis, J.D. 2020. Arabidopsis Abscisic Acid Repressor 1 (ABR1) is a susceptibility hub that interacts with multiple Pseudomonas syringae effectors. Plant Journal. 105(5):1274-1292. https://doi.org/10.1111/tpj.15110.

Arabidopsis Abscisic Acid Repressor 1 (ABR1) is a susceptibility hub that interacts with multiple Pseudomonas syringae effectors Reprint Icon - (Peer Reviewed Journal)
Schreiber, K.J., Hassan, J.A., Lewis, J.D. 2020. Arabidopsis Abscisic Acid Repressor 1 (ABR1) is a susceptibility hub that interacts with multiple Pseudomonas syringae effectors. Plant Journal. 105(5):1274-1292. https://doi.org/10.1111/tpj.15110.

A natural diversity screen in Arabidopsis thaliana reveals determinants for HopZ1a recognition in the ZAR1-ZED1 immune complex Reprint Icon - (Peer Reviewed Journal)
Baudin, M., Martin, E., Sass, C., Hassan, J.A., Bendix, C.L., Sauceda, R., Diplock, N., Specht, C.D., Petrescu, A., Lewis, J.D. 2020. A natural diversity screen in Arabidopsis thaliana reveals determinants for HopZ1a recognition in the ZAR1-ZED1 immune complex. Plant Cell and Environment. 44(2):629-644. https://doi.org/10.1111/pce.13927.

A compact Cascade-Cas3 system for targeted genome engineering Reprint Icon - (Peer Reviewed Journal)
Csorgo, B., Leon, L., Chau-Ly, I., Vasquez-Rifo, A., Berry, J., Mahendra, C., Crawford, E., Lewis, J.D., Bondy-Denomy, J. 2020. A compact Cascade-Cas3 system for targeted genome engineering. Nature Methods. 17:1183-1190. https://doi.org/10.1038/s41592-020-00980-w.

Comparative genomics screen identifies microbe-associated molecular patterns from Candidatus Liberibacter spp. that elicit immune responses in plants Reprint Icon - (Peer Reviewed Journal)
Chen, Y., Bendix, C., Lewis, J.D. 2020. Comparative genomics screen identifies microbe-associated molecular patterns from Candidatus Liberibacter spp. that elicit immune responses in plants. Molecular Plant-Microbe Interactions. 33(3:539-552. https://doi.org/10.1094/MPMI-11-19-0309-R.

High-throughput identification of resistance to Pseudomonas syringae pv. tomato in tomato using seedling flood assay Reprint Icon - (Peer Reviewed Journal)
Hassan, J.A., Chau-Ly, I.J., Lewis, J.D. 2020. High-throughput identification of resistance to Pseudomonas syringae pv. tomato in tomato using seedling flood assay. Journal of Visualized Experiments. 157.Article e60805. https://doi.org/10.3791/60805.

Structure-function analysis of the immune receptor ZAR1 reveals key molecular interactions for activity Reprint Icon - (Peer Reviewed Journal)
Baudin, M., Martin, E.C., Petrescu, A.J., Lewis, J.D. 2019. Structure-function analysis of the immune receptor ZAR1 reveals key molecular interactions for activity. The Plant Cell. 101(2):352-370. https://doi.org/10.1111/tpj.14547.

Structure-function analysis of ZAR1 immune receptor reveals key molecular interactions for activity Reprint Icon - (Peer Reviewed Journal)
Baudin, M., Schrieber, K., Martin, E.C., Petrescu, A.J., Lewis, J.D. 2019. Structure-function analysis of ZAR1 immune receptor reveals key molecular interactions for activity. Plant Journal. 101(2):352-370. https://doi.org/10.1111/tpj.14547.

Protein acetylation in pathogen virulence and host defense: In vitro detection of protein acetylation by radiolabeled acetyl coenzyme A Reprint Icon - (Peer Reviewed Journal)
Schreiber, K.J., Lewis, J.D. 2019. Protein acetylation in pathogen virulence and host defense: In vitro detection of protein acetylation by radiolabeled acetyl coenzyme A. Methods in Molecular Biology. 1991:23-32. https://doi.org/10.1007/978-1-4939-9458-8_3.