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ARS Home » Midwest Area » Ames, Iowa » Corn Insects and Crop Genetics Research » Research » Research Project #444068
Research Project: SoyBase and the Legume Information System - Information Infrastructure and Research for Legume Crop Improvement

Location: Corn Insects and Crop Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Complex reticulation in backbone subfamily relationships in Leguminosae Reprint Icon - (Peer Reviewed Journal)
Stai, J.S., Cardinal-Mcteague, W., Bruneau, A., Cannon, S.B. 2025. Complex reticulation in backbone subfamily relationships in Leguminosae. Molecular Phylogenetics and Evolution. 214. Article 108438. https://doi.org/10.1016/j.ympev.2025.108438.

Data for: Chromosome-level haplotype-resolved genome assemblies and annotations of Apios americana and Apios priceana Reprint Icon - (Database / Dataset)
Lee, H., Wright, H.C., Jordan, B.D., Belamkar, V., Singh, J., Kalberer, S.R., Clevenger, J., Cannon, S.B. 2025. Data from: Chromosome-level haplotype-resolved genome assemblies and annotations of Apios americana and Apios priceana. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/29274848.v1.

Legume genome structures and histories inferred from Cercis canadensis and Chamaecrista fasciculata genomes Reprint Icon - (Pre-print Publication)
Lee, H., Stai, J.S., Xu, Q., Hewavithana, T., Batra, R., Liu, A., Jordan, B.D., Walstead, R., Jenkins, J., Williams, M., Webber, J., Grimwood, J., Lovell, J.T., Bruna, T., Shu, S., Keymanesh, K., Eichenberger, J., Schmutz, J., Goodstein, D.M., Barry, K., Sankoff, D., Jin, L., Leebens-Mack, J.H., Cannon, S.B. 2024. Legume genome structures and histories inferred from Cercis canadensis and Chamaecrista fasciculata genomes. bioRxiv. https://doi.org/10.1101/2024.09.03.611065.

Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean Reprint Icon - (Peer Reviewed Journal)
Espina, M.C., Lovell, J., Sreedaysyam, A., Jenkins, J., Grimwood, J., Jordan, B.D., Cannon, S.B., Lorenz, A.J., Schmutz, J., Stupar, R.M. 2024. Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean. The Plant Journal. https://doi.org/10.1111/tpj.17026.

Pandagma: a tool for identifying pan-gene sets and gene families at desired evolutionary depths and accommodating whole genome duplications Reprint Icon - (Peer Reviewed Journal)
Cannon, S.B., Lee, H., Weeks, N.T., Berendzen, J. 2024. Pandagma: a tool for identifying pan-gene sets and gene families at desired evolutionary depths and accommodating whole genome duplications. Bioinformatics. https://doi.org/10.1093/bioinformatics/btae526.

Complex reticulation in backbone subfamily relationships in Leguminosae Reprint Icon - (Pre-print Publication)
Stai, J.S., Cardinal-Mcteague, W., Bruneau, A., Cannon, S.B. 2024. Complex reticulation in backbone subfamily relationships in Leguminosae. bioRxiv. https://doi.org/10.1101/2024.07.12.603319.