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ARS Home » Midwest Area » Ames, Iowa » Corn Insects and Crop Genetics Research » Research » Research Project #443549
Research Project: Regulatory Networks in Cereal Host-Fungal Pathogen Interactions

Location: Corn Insects and Crop Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

NGPINT_V3: a containerized orchestration Python software for discovery of next-generation protein–protein interactions Reprint Icon - (Peer Reviewed Journal)
Smith, S.D., Velasquez-Zapata, V., Wise, R.P. 2025. NGPINT_V3: a containerized orchestration Python software for discovery of next-generation protein–protein interactions. Bioinformatics. 41(6). Article btaf343. https://doi.org/10.1093/bioinformatics/btaf343.

Oregon Wolfe barley genetic stocks – Research and teaching tools for next generation scientists Reprint Icon - (Peer Reviewed Journal)
Krause, M., Arbalaez, J., Asdal, A., Belkodja, R., Brown, P.J., Boury, N., Blake, V.C., Casas, A., Cistue, L., Farre-Martinez, A., Fisk, S., Fuerst, G.S., Gimenez, E., Guijarro-Real, C., Guthrie, K., Halstead, M., Helgerson, L., Hisano, H., Igartua, E., Lillemo, M., Martinez-Garcia, M., Martinez-Subira, M., Mccouch, S., Mcghee, L., Nickols, T., Peters, N., Porter, R., Romagosa, I., Ruud, A., Sato, K., Salvi, S., Sangiorgi, G., Schuller, R., Sen, T.Z., Soriano, J., Stupar, R.M., Ting, T., Vining, K., Von Korff, M., Walla, A., Wang, D.R., Waugh, R., Wise, R.P., Wolfe, R., Yao, E., Hayes, P.M. 2025. Oregon Wolfe barley genetic stocks – Research and teaching tools for next generation scientists. Journal of Plant Registrations. 19(3). Article e70004. https://doi.org/10.1002/plr2.70004.

Diverse epistatic effects in barley-powdery mildew interactions localize to host chromosome hotspots Reprint Icon - (Peer Reviewed Journal)
Velasquez-Zapata, V., Smith, S., Priyanka, S., Chapman, A.V., Jaiswal, N., Helm, M.D., Wise, R.P. 2024. Diverse epistatic effects in barley-powdery mildew interactions localize to host chromosome hotspots. iScience. https://doi.org/10.1016/j.isci.2024.111013.

The great petunia carnage of 2017: A clicker case study using petunias to describe effect of genetic modification on the biochemistry of flower color and phenotype in plants Reprint Icon - (Peer Reviewed Journal)
Boury, N., Van den Bogaard, M., Wlezien, E.B., Peters, N., Wise, R.P. 2024. The great petunia carnage of 2017: A clicker case study using petunias to describe effect of genetic modification on the biochemistry of flower color and phenotype in plants. CourseSource. https://doi.org/10.24918/cs.2024.15.

Protein-protein networks in an integrated barley-powdery mildew interactome - (Abstract Only)
Velasquez-Zapata, V., Elmore, J.M., Patel, S., Smith, S., Fuerst, G.S., Wise, R.P. 2024. Protein-protein networks in an integrated barley-powdery mildew interactome. Fungal Genetics Conference Proceedings. Abstract no. 662A Protein-protein networks in an integrated barley-powdery mildew interactome. 32nd Fungal Genetics Conference March 12–17, 2024 | Asilomar Conference Grounds | Pacific Grove, CA |

iTAG: Interactive laboratory exercises to explore genotype and phenotype using Oregon Wolfe barley Reprint Icon - (Peer Reviewed Journal)
Wise, R.P., Fuerst, G.S., Peters, N., Boury, N., McGhee, L., Greene, M., Michaelson, S., Gonzalez, J., Hayes, N., Schuck, R., Maffin, L., Hall, G., Hubbard, T., Whigham, E. 2024. iTAG: Interactive laboratory exercises to explore genotype and phenotype using Oregon Wolfe barley. The Plant Health Instructor. 24. https://doi.org/10.1094/PHI-E-2023-09-0009.

Host-pathogen networks in an integrated barley-powdery mildew interactome - (Abstract Only)
Velasquez-Zapata, V., Elmore, J.M., Patel, S., Smith, S., Fuerst, G.S., Wise, R.P. 2024. Host-pathogen networks in an integrated barley-powdery mildew interactome. Plant and Animal Genome Conference Proceedings. https://pag.confex.com/pag/31/work/papers/viewonly.cgi?password=860965&username=54280. International Plant & Animal Genome / PAG 31 • January 12-17, 2024 • San Diego, CA, USA

Network hubs in pathogen-host interactions: Targets for next-generation breeding - (Abstract Only)
Velasquez-Zapata, V., Elmore, J.M., Patel, S., Smith, S., Fuerst, G.S., Wise, R.P. 2024. Network hubs in pathogen-host interactions: Targets for next-generation breeding. Barley Improvement Conference Proceedings, January 10-11, 2024, San Diego, California.

Transcriptome-based host epistasis and pathogen co-expression in barley-powdery mildew interactions Reprint Icon - (Pre-print Publication)
Velasquez-Zapata, V., Smith, S., Priyanka, S., Chapman, A.E., Wise, R.P. 2023. Transcriptome-based host epistasis and pathogen co-expression in barley-powdery mildew interactions. Genetics. https://doi.org/10.1101/2023.09.18.558274.