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ARS Home » Pacific West Area » Davis, California » Crops Pathology and Genetics Research » Research » Research Project #437846

Research Project: Resilient, Sustainable Production Strategies for Low-Input Environments

Location: Crops Pathology and Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Investigating grapevine red blotch virus infection in Vitis vinifera L. cv. Cabernet Sauvignon grapes: A multi-omics approach Reprint Icon - (Peer Reviewed Journal)
Rumbaugh, A.C., Durbin-Johnson, B., Padhi, E., Lerno, L., Cauduro Girardello, R., Britton, M., Slupsky, C., Sudarshana, M.R., Oberholster, A. 2022. Investigating grapevine red blotch virus infection in Vitis vinifera L. cv. Cabernet Sauvignon grapes: A multi-omics approach . International Journal of Molecular Sciences. 23(21):13248. https://doi.org/10.3390/ijms232113248.

Esca grapevine disease involves leaf hydraulic failure and represents a unique senescence program - (Peer Reviewed Journal)

Role of the KNOTTED1-LIKE HOMEOBOX protein (KD1) in regulating abscission of tomato flower pedicels at early and late stages of the process Reprint Icon - (Peer Reviewed Journal)
Sundaresan, S., Philosoph-Hadas, S., Ma, C., Jiang, C., Riov, J., Kochanek, B., Salim, S., Reid, M.S., Meir, S. 2022. Role of the KNOTTED1-LIKE HOMEOBOX protein (KD1) in regulating abscission of tomato flower pedicels at early and late stages of the process. Physiologia Plantarum. 173(4):2103-2118. https://doi.org/10.1111/ppl.13560.

Fungal species associated with grapevine trunk diseases in Washington wine-grapes and California table-grapes, with novelties in the genera Cadophora, Cytospora, and Sporocadus Reprint Icon - (Peer Reviewed Journal)
Travadon, R., Lawrence, D.P., Moyer, M.M., Fujiyoshi, P.T., Baumgartner, K. 2022. Fungal species associated with grapevine trunk diseases in Washington wine-grapes and California table-grapes, with novelties in the genera Cadophora, Cytospora, and Sporocadus. Frontiers in Fungal Biology. https://doi.org/10.3389/ffunb.2022.1018140.

Mapping phosphorus dynamics in California vineyard soils using a machine learning ensemble - (Peer Reviewed Journal)

Preventing trunk diseases with fungicide applications to pruning wounds in Washington wine grapes - (Peer Reviewed Journal)

Tracheid buckling buys time, foliar water uptake pays it back - coordination of leaf structure and function protects deep redwood crowns - (Peer Reviewed Journal)

Structural and functional leaf diversity lead to variability in photosynthetic capacity across a range of Juglans regia genotypes - (Peer Reviewed Journal)

The chrysanthemum DEAD-box RNA helicase, CmRH56, regulates rhizome outgrowth in response to drought stress Reprint Icon - (Peer Reviewed Journal)

First report of root and crown rot caused by Armillaria gallica on Cannabis sativa in California, U.S.A. Reprint Icon - (Peer Reviewed Journal)

The HD-Zip transcription factor S1HB15A regulates abscission by modulating jasmonoyl-isoleucine biosynthesis Reprint Icon - (Peer Reviewed Journal)
Liu, X., Cheng, L., Li, R., Cai, Y., Wang, X., Fu, X., Dong, X., Qi, M., Jiang, C., Xu, T., Li, T. 2022. The HD-Zip transcription factor S1HB15A regulates abscission by modulating jasmonoyl-isoleucine biosynthesis. Plant Physiology. 189(4):2396-2412. https://doi.org/10.1093/plphys/kiac212.

Vine water status mapping with multispectral UAV imagery and machine learning Reprint Icon - (Peer Reviewed Journal)
Tang, Z., Jin, Y., Alsina, M.M., McElrone, A.J., Bambach, N.E., Kustas, W.P. 2022. Vine water status mapping with multispectral UAV imagery and machine learning. Irrigation Science. https://doi.org/10.1007/s00271-022-00788-w.

Inter-annual variability of land surface fluxes across vineyards: The role of climate, phenology, and irrigation management Reprint Icon - (Peer Reviewed Journal)
Bambach, N.E., Kustas, W.P., Alfieri, J.G., Gao, F.N., Prueger, J.H., Hipps, L., McKee, L.G., Castro-Bustamante, S., Alsina, M.M., McElrone, A.J. 2022. Inter-annual variability of land surface fluxes across vineyards: The role of climate, phenology, and irrigation management. Irrigation Science. https://doi.org/10.1007/s00271-022-00784-0.

Evapotranspiration uncertainty at micrometeorological scales: The impact of the eddy covariance energy imbalance and correction methods Reprint Icon - (Peer Reviewed Journal)
Bambach, N.E., Kustas, W.P., Alfieri, J.G., Prueger, J.H., Hipps, L., McKee, L.G., Castro-Bustamante, S., Volk, J., Alsina, M.M., McElrone, A.J. 2022. Evapotranspiration uncertainty at micrometeorological scales: The impact of the eddy covariance energy imbalance and correction methods. Irrigation Science. https://doi.org/10.1007/s00271-022-00783-1.

Dessication of the leaf mesophyll and its implications for C02 diffusion and light processing Reprint Icon - (Peer Reviewed Journal)
Momayyezi, M., Borsuk, A., Brodersen, C., Gilbert, M., Theroux-Rancourt, G., Kluepfel, D.A., McElrone, A.J. 2022. Dessication of the leaf mesophyll and its implications for C02 diffusion and light processing. Plant, Cell & Environment. 45(5):1362-1381. https://doi.org/10.1111/pce.14287.

Detecting short-term stress and recovery events in a vineyard using tower-based remote sensing of photochemical reflectance index (PRI) Reprint Icon - (Peer Reviewed Journal)
Wong, C.Y., Bambach, N.E., Alsina, M.M., McElrone, A.J., Jones, T., Buckley, T.N., Kustas, W.P., Magney, T.S. 2022. Detecting short-term stress and recovery events in a vineyard using tower-based remote sensing of photochemical reflectance index (PRI). Irrigation Science. https://doi.org/10.1007/s00271-022-00777-z.

S1-bZIP transcription factors play important roles in the regulation of fruit quality and stress responses Reprint Icon - (Peer Reviewed Journal)
Wang, H., Zhang, Y., Norris, A.M., Jiang, C. 2022. S1-bZIP transcription factors play important roles in the regulation of fruit quality and stress responses. Frontiers in Plant Science. 12. Article 802802. https://doi.org/10.3389/fpls.2021.802802.

A regional soil classification framework to improve soil health diagnosis and management Reprint Icon - (Peer Reviewed Journal)
Devine, S.M., Steenwerth, K.L., O'Geen, A.T. 2021. A regional soil classification framework to improve soil health diagnosis and management. Soil Science Society of America Journal. 85(2):361-378. https://doi.org/10.1002/saj2.20200.

Improvement of drought resistance through manipulation of the gibberellic acid pathway Reprint Icon - (Peer Reviewed Journal)
Zhang, Y., Norris, A.M., Reid, M., Jiang, C. 2021. Improvement of drought resistance through manipulation of the gibberellic acid pathway. Ornamental Plant Research. 1. Article 11. https://doi.org/10.48130/OPR-2021-0011.

Root pressure-volume curve traits capture rootstock drought tolerance Reprint Icon - (Peer Reviewed Journal)
Bartlett, M.K., Sinclair, G., Fontanesi, G., Knipfer, T.M., Walker, M.A., McElrone, A.J. 2021. Root pressure-volume curve traits capture rootstock drought tolerance. Annals Of Botany. 129(4):389-402. https://doi.org/10.1093/aob/mcab132.

Esca and Young Vine Decline - (Book / Chapter)
Baumgartner, K., Mahaffee, W.F. 2022. Esca and Young Vine Decline. In: Moyer, M.M., O'Neal, S.D., editors. Field Guide for Integrated Pest Management in Pacific Northwest Vineyards. 2nd edition. Pacific Northwest Extension Publication #PNW644. Pullman, WA: Washington State University Press. p.89-91.

Detection of spores of causal fungi of dieback-type trunk diseases in young, asymptomatic vineyards and mature, symptomatic vineyards Reprint Icon - (Peer Reviewed Journal)
Fujiyoshi, P.T., Lawrence, D.P., Travadon, R., Cooper, M., Verdegaal, P., Schwebs, S., Baumgartner, K. 2021. Detection of spores of causal fungi of dieback-type trunk diseases in young, asymptomatic vineyards and mature, symptomatic vineyards. Crop Protection. 150. Article 105798. https://doi.org/10.1016/j.cropro.2021.105798.

DNA-based detection of grapevine trunk-disease from environmental spore samples Reprint Icon - (Peer Reviewed Journal)
Fujiyoshi, P.T., Lawrence, D.P., Travadon, R., Baumgartner, K. 2021. DNA-based detection of grapevine trunk-disease from environmental spore samples. MethodsX. 8. Article 101494. https://doi.org/10.1016/j.mex.2021.101494.

Revisiting the source of wilt symptoms: X-ray microcomputed tomography provides direct evidence that Ralstonia biomass clogs xylem vessels Reprint Icon - (Peer Reviewed Journal)
Ingel, B., Caldwell, D., Duong, F., Parkinson, D.Y., McCulloh, K.A., Iyer-Pascuzzi, A.S., McElrone, A.J., Lowe-Power, T.M. 2022. Revisiting the source of wilt symptoms: X-ray microcomputed tomography provides direct evidence that Ralstonia biomass clogs xylem vessels. Phytofrontiers. 2(1):41-51. https://doi.org/10.1094/PHYTOFR-06-21-0041-R.

Soil health practices have different outcomes depending on local soil conditions Reprint Icon - (Peer Reviewed Journal)
Devine, S.M., Steenwerth, K.L., O'Geen, A.T. 2022. Soil health practices have different outcomes depending on local soil conditions. California Agriculture. 76(1):46-55. https://doi.org/10.3733/ca.2022a0005.

Ecologically driven selection of nonstructural carbohydrate storage in oak trees Reprint Icon - (Peer Reviewed Journal)
Furze, M.E., Wainwright, D.K., Huggett, B.A., Knipfer, T., McElrone, A.J., Brodersen, C.R. 2021. Ecologically driven selection of nonstructural carbohydrate storage in oak trees. New Phytologist. 232:567-578. https://doi.org/10.1111/nph.17605.

A cytokinin analog Thidiazuron suppresses shoot growth in potted rose plants via the gibberellic acid pathway Reprint Icon - (Peer Reviewed Journal)
Celikel, F., Zhang, Q., Zhang, Y., Reid, M., Jiang, C. 2021. A cytokinin analog Thidiazuron suppresses shoot growth in potted rose plants via the gibberellic acid pathway. Frontiers in Plant Science. 12. Article 639717. https://doi.org/10.3389/fpls.2021.639717.

Auxin response and transport during induction of pedicel abscission in tomato Reprint Icon - (Peer Reviewed Journal)
Dong, X., Ma, C., Xu, T., Reid, M., Jiang, C., Li, T. 2021. Auxin response and transport during induction of pedicel abscission in tomato. Horticulture Research. 8. Article 192. https://doi.org/10.1038/s41438-021-00626-8.

Inherent and stress-induced responses of fine root morphology and anatomy in commercial grapevine rootstocks with contrasting drought resistance Reprint Icon - (Peer Reviewed Journal)
Reingwirtz, I., Uretsky, J., Cuneo, I.F., Knipfer, T.M., Reyes, C., Walker, A.M., McElrone, A.J. 2021. Inherent and stress-induced responses of fine root morphology and anatomy in commercial grapevine rootstocks with contrasting drought resistance. Plants. 10(6). Article 1121. https://doi.org/10.3390/plants10061121.

Impacts of large-scale teleconnection indices on chill accumulations for specialty crops in California Reprint Icon - (Peer Reviewed Journal)
Zhang, N., Pathak, T., Parker, L., Ostoja, S.M. 2021. Impacts of large-scale teleconnection indices on chill accumulations for specialty crops in California. Science of the Total Environment. 791. Article 148025. https://doi.org/10.1016/j.scitotenv.2021.148025.

The circadian-controlled PIF8-BBX28 module regulates petal senescence in rose flowers by governing mitochondrial ROS homeostasis at night Reprint Icon - (Peer Reviewed Journal)
Zhang, Y., Wu, Z., Feng, M., Chen, J., Qin, M., Wang, W., Bao, Y., Xu, Q., Ye, Y., Ma, C., Jiang, C., Gan, S., Zhou, H., Cai, Y., Hong, B., Gao, J., Ma, N. 2021. The circadian-controlled PIF8-BBX28 module regulates petal senescence in rose flowers by governing mitochondrial ROS homeostasis at night. The Plant Cell. 33(8):2716-2735. https://doi.org/10.1093/plcell/koab152.

Sources and assembly of microbial communities in vineyards as a functional component of winegrowing Reprint Icon - (Review Article)
Griggs, R.G., Steenwerth, K.L., Mills, D.A., Cantu, D., Bokulich, N.A. 2021. Sources and assembly of microbial communities in vineyards as a functional component of winegrowing. Frontiers in Microbiology. 6(12). Article e05708. https://doi.org/10.3389/fmicb.2021.673810.

Transcriptomics provides a genetic signature of vineyard site and offers insight into vintage-independent inoculated fermentation outcomes Reprint Icon - (Peer Reviewed Journal)
Reiter, T., Montpetit, R., Byer, S., Frias, I., Leon, E., Viano, R., Mcloughlin, M., Halligan, T., Hernandez, D., Figueroa-Balderas, R., Cantu, D., Steenwerth, K.L., Runnebaum, R., Montpetit, B. 2021. Transcriptomics provides a genetic signature of vineyard site and offers insight into vintage-independent inoculated fermentation outcomes. mSystems. 6(2). Article e00033-21. https://doi.org/10.1128/mSystems.00033-21.

AUXIN RESPONSE FACTOR 18–HISTONE DEACETYLASE 6 module regulates floral organ identity in rose (Rosa hybrida) Reprint Icon - (Peer Reviewed Journal)
Chen, J., Li, Y., Li, Y., Ji, Y., Wang, Y., Jiang, C., Choisy, P., Xu, T., Cai, Y., Pei, D., Jiang, C., Gan, S., Gao, J., Ma, N. 2021. AUXIN RESPONSE FACTOR 18–HISTONE DEACETYLASE 6 module regulates floral organ identity in rose (Rosa hybrida). Plant Physiology. 186(2):1074-1087. https://doi.org/10.1093/plphys/kiab130.

Inflorescence abscission protein S1IDL6 promotes low light intensity-induced tomato flower abscission Reprint Icon - (Peer Reviewed Journal)
Li, R., Shi, C., Wang, X., Meng, Y., Cheng, L., Jiang, C., Qi, M., Xu, T., Li, T. 2021. Inflorescence abscission protein S1IDL6 promotes low light intensity-induced tomato flower abscission. Plant Physiology. 186:1288-1301. https://doi.org/10.1093/plphys/kiab121.

Phylogenomics of plant-associated Botryosphaeriaceae species Reprint Icon - (Peer Reviewed Journal)
Garcia, J., Lawrence, D.P., Morales-Cruz, A., Travadon, R., Minio, A., Hernandez-Martinez, R., Rolshausen, P.E., Baumgartner, K., Cantu, D. 2021. Phylogenomics of plant-associated Botryosphaeriaceae species. Frontiers in Microbiology. 12. Article 652802. https://doi.org/10.3389/fmicb.2021.652802.

Dehydration-induced WRKY transcriptional factor MfWRKY70 of Myrothamnus flabellifolia enhanced drought and salinity tolerance in Arabidopsis Reprint Icon - (Peer Reviewed Journal)
Xiang, X., Chen, J., Xu, W., Qiu, J., Song, L., Wang, J., Tang, R., Chen, D., Jiang, C., Huang, Z. 2021. Dehydration-induced WRKY transcriptional factor MfWRKY70 of Myrothamnus flabellifolia enhanced drought and salinity tolerance in Arabidopsis. Biomolecules. 11(2). Article 327. https://doi.org/10.3390/biom11020327.

Reforestation tool for tree mortality in postfire reforestation framework for national forests in California - (Government Publication)
Steele, Z., Meyer, M., North, M., Wuenschel, A., Ostoja, S.M. 2021. Reforestation tool for tree mortality in postfire reforestation framework for national forests in California. Forest Service General Technical Reports. Appendix 7:pp 191-192.

Ethylene-regulated asymmetric growth of the petal base promotes flower opening in rose (Rosa hybrida) Reprint Icon - (Peer Reviewed Journal)
Cheng, C., Yu, Q., Wang, Y., Wang, H., Dong, Y., Ji, Y., Zhou, X., Li, Y., Jiang, C., Gan, S., Zhao, L., Fei, Z., Gao, J., Ma, C. 2021. Ethylene-regulated asymmetric growth of the petal base promotes flower opening in rose (Rosa hybrida). The Plant Cell. 33(4):1229-1251. https://doi.org/10.1093/plcell/koab031.

SlERF52 regulates SlTIP1;1 expression to accelerate tomato pedicel abscission Reprint Icon - (Peer Reviewed Journal)
Wang, R., Li, R., Cheng, L., Wang, X., Fu, X., Dong, X., Qi, M., Jiang, C., Xu, T., Li, T. 2021. SlERF52 regulates SlTIP1;1 expression to accelerate tomato pedicel abscission. Plant Physiology. 185:1829-1846. https://doi.org/10.1093/plphys/kiab026.

Functional hydraulic sectoring in grapevines as evidenced by sap flow, dye infusion, leaf removal, and micro-computed tomography Reprint Icon - (Peer Reviewed Journal)
McElrone, A.J., Manuck, C., Patakas, A., Pearsall, K.R., Brodersen, C.R., Williams, L.E. 2021. Functional hydraulic sectoring in grapevines as evidenced by sap flow, dye infusion, leaf removal, and micro-computed tomography. AoB Plants. 13(2). Article plab003. https://doi.org/10.1093/aobpla/plab003.

Fungal and bacterial communities of ‘Pinot noir’ must: effects of vintage, growing region, climate, and basic must chemistry Reprint Icon - (Peer Reviewed Journal)
Steenwerth, K.L., Morelan, I.A., Stahel, R.J., Figueroa-Balderas, R., Cantu, D., Lee, J., Runnebaum, R.C., Poret-Peterson, A.T. 2021. Fungal and bacterial communities of ‘Pinot noir’ must: effects of vintage, growing region, climate, and basic must chemistry. PeerJ. 9. Article e10836. https://doi.org/10.7717/peerj.10836.

Pruning-wound protectants for trunk-disease management in California table grapes Reprint Icon - (Peer Reviewed Journal)
Brown, A.A., Travadon, R., Lawrence, D.P., Torres, G., Zhuang, G., Baumgartner, K. 2022. Pruning-wound protectants for trunk-disease management in California table grapes. Crop Protection Journal. 141:105490. https://doi.org/10.1016/j.cropro.2020.105490.

Climate change reduces frost exposure for high-value California orchard crops Reprint Icon - (Peer Reviewed Journal)
Parker, L., Pathak, T., Ostoja, S.M. 2020. Climate change reduces frost exposure for high-value California orchard crops. Science of the Total Environment. 762. Article 143971. https://doi.org/10.1016/j.scitotenv.2020.143971.

Adaptation strategies and approaches for California forest ecosystems - (Government Publication)
Swanston, C.W., Brandt, L.A., Butler-Leopold, P.R., Hall, K.R., Handler, S.D., Janowiak, M.K., Merriam, K., Meyer, M., Molinari, N., Schmitt, K.M., Shannon, P.D., Smith, J.B., Wuenschel, A., Ostoja, S.M. 2020. Adaptation strategies and approaches for California forest ecosystems. Government Publication/Report.

Xylella fastidiosa causes transcriptional shifts that precede tylose formation and starch depletion in xylem Reprint Icon - (Peer Reviewed Journal)
Ingel, B., Reyes, C.R., Massonnet, M., Boudreau, B., Sun, Y., Sun, Q., McElrone, A.J., Cantu, D., Roper, M. 2020. Xylella fastidiosa causes transcriptional shifts that precede tylose formation and starch depletion in xylem. Molecular Plant Pathology. 22(2):175-188. https://doi.org/10.1111/mpp.13016.

Modification of a gas exchange system to measure active and passive chlorophyll fluorescence simultaneously under field conditions Reprint Icon - (Peer Reviewed Journal)
Meeker, E.W., Magney, T.S., Bambach, N., Momayyezi, M., McElrone, A.J. 2020. Modification of a gas exchange system to measure active and passive chlorophyll fluorescence simultaneously under field conditions. AoB Plants. 13(1). Article plaa006. https://doi.org/10.1093/aobpla/plaa066.

A novel aspartic protease inhibitor inhibits the enzymatic browning of potatoes Reprint Icon - (Peer Reviewed Journal)
Dong, T., Yu, C., Li, G., Zhu, Z., Zhang, S., Jiang, C., Wang, Q. 2021. A novel aspartic protease inhibitor inhibits the enzymatic browning of potatoes. Postharvest Biology and Technology. 172. Article 111353. https://doi.org/10.1016/j.postharvbio.2020.111353.

Coordinated decline of leaf hydraulic and stomatal conductances under drought is not linked to leaf xylem embolism for different grapevine cultivars Reprint Icon - (Peer Reviewed Journal)
Albuquerque, C., Scoffoni, C., Brodersen, C., Buckley, T., Sack, L., McElrone, A.J. 2020. Coordinated decline of leaf hydraulic and stomatal conductances under drought is not linked to leaf xylem embolism for different grapevine cultivars. Journal of Experimental Botany. 71(22):7286-7300. https://doi.org/10.1093/jxb/eraa392.